data_GKC # _chem_comp.id GKC _chem_comp.name "(2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{S},4~{R},5~{R},6~{R})-6-(cyclohexylmethoxy)-2-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H34 O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-03 _chem_comp.pdbx_modified_date 2021-02-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 438.467 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GKC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7CTQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GKC O1 O1 O 0 1 N N N -24.566 -7.353 -57.614 3.289 -0.266 1.426 O1 GKC 1 GKC C1 C1 C 0 1 N N R -25.002 -8.553 -58.299 3.136 0.931 0.660 C1 GKC 2 GKC C10 C2 C 0 1 N N N -21.363 -9.573 -59.227 0.534 -1.608 -0.974 C10 GKC 3 GKC C11 C3 C 0 1 N N R -24.005 -12.613 -60.486 -1.230 1.934 0.646 C11 GKC 4 GKC C12 C4 C 0 1 N N R -22.551 -12.547 -60.999 -1.988 1.071 -0.366 C12 GKC 5 GKC C13 C5 C 0 1 N N N -22.040 -14.450 -62.405 -4.172 0.224 -0.876 C13 GKC 6 GKC C14 C6 C 0 1 N N N -22.490 -15.904 -62.275 -5.594 0.123 -0.321 C14 GKC 7 GKC C15 C7 C 0 1 N N N -23.070 -16.119 -60.893 -6.507 -0.512 -1.372 C15 GKC 8 GKC C16 C8 C 0 1 N N N -23.573 -16.113 -63.278 -5.589 -0.744 0.940 C16 GKC 9 GKC C17 C9 C 0 1 N N N -23.749 -17.473 -60.783 -7.930 -0.613 -0.817 C17 GKC 10 GKC C18 C10 C 0 1 N N N -24.860 -17.552 -61.766 -7.924 -1.480 0.444 C18 GKC 11 GKC C19 C11 C 0 1 N N N -24.192 -17.492 -63.096 -7.011 -0.846 1.495 C19 GKC 12 GKC C2 C12 C 0 1 N N R -26.384 -8.313 -58.995 4.481 1.308 0.033 C2 GKC 13 GKC C3 C13 C 0 1 N N R -25.477 -6.944 -56.512 3.705 -1.399 0.661 C3 GKC 14 GKC C4 C14 C 0 1 N N S -27.249 -7.339 -58.180 4.977 0.145 -0.831 C4 GKC 15 GKC C5 C15 C 0 1 N N S -26.903 -7.504 -56.707 5.073 -1.115 0.035 C5 GKC 16 GKC C6 C16 C 0 1 N N N -24.988 -7.283 -55.092 3.807 -2.622 1.576 C6 GKC 17 GKC C7 C17 C 0 1 N N S -23.654 -10.400 -59.378 0.826 0.632 0.097 C7 GKC 18 GKC C8 C18 C 0 1 N N R -24.579 -11.193 -60.300 0.236 2.041 0.216 C8 GKC 19 GKC C9 C19 C 0 1 N N R -22.288 -10.432 -60.039 -0.012 -0.181 -0.894 C9 GKC 20 GKC O10 O2 O 0 1 N N N -21.611 -8.203 -59.547 -0.187 -2.339 -1.968 O10 GKC 21 GKC O11 O3 O 0 1 N N N -21.961 -13.870 -61.091 -3.345 0.921 0.058 O11 GKC 22 GKC O2 O4 O 0 1 N N N -26.270 -7.824 -60.357 4.319 2.472 -0.781 O2 GKC 23 GKC O3 O5 O 0 1 N N N -28.643 -7.597 -58.467 6.267 0.459 -1.361 O3 GKC 24 GKC O4 O6 O 0 1 N N N -27.806 -6.782 -55.852 5.466 -2.224 -0.777 O4 GKC 25 GKC O5 O7 O 0 1 N N N -24.027 -8.994 -59.279 2.172 0.716 -0.373 O5 GKC 26 GKC O6 O8 O 0 1 N N N -24.748 -8.685 -54.980 2.508 -2.956 2.070 O6 GKC 27 GKC O7 O9 O 0 1 N N N -21.753 -11.761 -60.110 -1.371 -0.214 -0.451 O7 GKC 28 GKC O8 O10 O 0 1 N N N -25.947 -11.243 -59.817 0.968 2.783 1.194 O8 GKC 29 GKC O9 O11 O 0 1 N N N -24.821 -13.344 -61.431 -1.810 3.239 0.692 O9 GKC 30 GKC H1 H1 H 0 1 N N N -25.144 -9.352 -57.557 2.799 1.738 1.309 H1 GKC 31 GKC H2 H2 H 0 1 N N N -21.546 -9.742 -58.156 1.591 -1.578 -1.240 H2 GKC 32 GKC H3 H3 H 0 1 N N N -20.319 -9.826 -59.465 0.416 -2.096 -0.007 H3 GKC 33 GKC H4 H4 H 0 1 N N N -24.011 -13.124 -59.512 -1.288 1.475 1.633 H4 GKC 34 GKC H5 H5 H 0 1 N N N -22.560 -12.082 -61.996 -1.964 1.552 -1.344 H5 GKC 35 GKC H6 H6 H 0 1 N N N -21.052 -14.410 -62.887 -3.773 -0.777 -1.038 H6 GKC 36 GKC H7 H7 H 0 1 N N N -22.767 -13.891 -63.013 -4.189 0.766 -1.821 H7 GKC 37 GKC H8 H8 H 0 1 N N N -21.647 -16.587 -62.455 -5.960 1.119 -0.075 H8 GKC 38 GKC H9 H9 H 0 1 N N N -22.259 -16.064 -60.152 -6.511 0.105 -2.270 H9 GKC 39 GKC H10 H10 H 0 1 N N N -23.809 -15.330 -60.688 -6.141 -1.509 -1.618 H10 GKC 40 GKC H11 H11 H 0 1 N N N -23.152 -16.034 -64.291 -5.222 -1.741 0.694 H11 GKC 41 GKC H12 H12 H 0 1 N N N -24.348 -15.345 -63.142 -4.938 -0.292 1.689 H12 GKC 42 GKC H13 H13 H 0 1 N N N -24.149 -17.601 -59.766 -8.296 0.383 -0.572 H13 GKC 43 GKC H14 H14 H 0 1 N N N -23.018 -18.268 -60.992 -8.580 -1.065 -1.566 H14 GKC 44 GKC H15 H15 H 0 1 N N N -25.551 -16.705 -61.640 -8.938 -1.552 0.839 H15 GKC 45 GKC H16 H16 H 0 1 N N N -25.413 -18.496 -61.652 -7.558 -2.477 0.198 H16 GKC 46 GKC H17 H17 H 0 1 N N N -24.933 -17.671 -63.889 -7.007 -1.463 2.393 H17 GKC 47 GKC H18 H18 H 0 1 N N N -23.405 -18.259 -63.149 -7.377 0.151 1.740 H18 GKC 48 GKC H19 H19 H 0 1 N N N -26.908 -9.280 -59.015 5.206 1.512 0.821 H19 GKC 49 GKC H20 H20 H 0 1 N N N -25.565 -5.848 -56.557 2.978 -1.594 -0.126 H20 GKC 50 GKC H21 H21 H 0 1 N N N -26.995 -6.313 -58.485 4.278 -0.027 -1.649 H21 GKC 51 GKC H22 H22 H 0 1 N N N -26.905 -8.574 -56.451 5.810 -0.961 0.823 H22 GKC 52 GKC H23 H23 H 0 1 N N N -24.056 -6.736 -54.888 4.209 -3.464 1.013 H23 GKC 53 GKC H24 H24 H 0 1 N N N -25.755 -6.985 -54.362 4.467 -2.395 2.413 H24 GKC 54 GKC H25 H25 H 0 1 N N N -23.610 -10.872 -58.385 0.810 0.146 1.072 H25 GKC 55 GKC H26 H26 H 0 1 N N N -24.571 -10.702 -61.284 0.299 2.546 -0.747 H26 GKC 56 GKC H27 H27 H 0 1 N N N -22.374 -10.008 -61.051 0.038 0.284 -1.879 H27 GKC 57 GKC H28 H28 H 0 1 N N N -21.031 -7.649 -59.039 0.107 -3.254 -2.073 H28 GKC 58 GKC H29 H29 H 0 1 N N N -27.138 -7.699 -60.723 4.002 3.248 -0.299 H29 GKC 59 GKC H30 H30 H 0 1 N N N -29.186 -6.999 -57.967 6.282 1.252 -1.915 H30 GKC 60 GKC H31 H31 H 0 1 N N N -27.555 -6.911 -54.945 6.323 -2.110 -1.210 H31 GKC 61 GKC H32 H32 H 0 1 N N N -24.447 -8.886 -54.102 2.497 -3.724 2.658 H32 GKC 62 GKC H33 H33 H 0 1 N N N -26.278 -10.359 -59.710 0.644 3.685 1.327 H33 GKC 63 GKC H34 H34 H 0 1 N N N -25.716 -13.384 -61.114 -2.740 3.247 0.957 H34 GKC 64 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GKC C16 C19 SING N N 1 GKC C16 C14 SING N N 2 GKC C19 C18 SING N N 3 GKC C13 C14 SING N N 4 GKC C13 O11 SING N N 5 GKC C14 C15 SING N N 6 GKC C18 C17 SING N N 7 GKC O9 C11 SING N N 8 GKC O11 C12 SING N N 9 GKC C12 C11 SING N N 10 GKC C12 O7 SING N N 11 GKC C15 C17 SING N N 12 GKC C11 C8 SING N N 13 GKC O2 C2 SING N N 14 GKC C8 O8 SING N N 15 GKC C8 C7 SING N N 16 GKC O7 C9 SING N N 17 GKC C9 C7 SING N N 18 GKC C9 C10 SING N N 19 GKC O10 C10 SING N N 20 GKC C7 O5 SING N N 21 GKC O5 C1 SING N N 22 GKC C2 C1 SING N N 23 GKC C2 C4 SING N N 24 GKC O3 C4 SING N N 25 GKC C1 O1 SING N N 26 GKC C4 C5 SING N N 27 GKC O1 C3 SING N N 28 GKC C5 C3 SING N N 29 GKC C5 O4 SING N N 30 GKC C3 C6 SING N N 31 GKC C6 O6 SING N N 32 GKC C1 H1 SING N N 33 GKC C10 H2 SING N N 34 GKC C10 H3 SING N N 35 GKC C11 H4 SING N N 36 GKC C12 H5 SING N N 37 GKC C13 H6 SING N N 38 GKC C13 H7 SING N N 39 GKC C14 H8 SING N N 40 GKC C15 H9 SING N N 41 GKC C15 H10 SING N N 42 GKC C16 H11 SING N N 43 GKC C16 H12 SING N N 44 GKC C17 H13 SING N N 45 GKC C17 H14 SING N N 46 GKC C18 H15 SING N N 47 GKC C18 H16 SING N N 48 GKC C19 H17 SING N N 49 GKC C19 H18 SING N N 50 GKC C2 H19 SING N N 51 GKC C3 H20 SING N N 52 GKC C4 H21 SING N N 53 GKC C5 H22 SING N N 54 GKC C6 H23 SING N N 55 GKC C6 H24 SING N N 56 GKC C7 H25 SING N N 57 GKC C8 H26 SING N N 58 GKC C9 H27 SING N N 59 GKC O10 H28 SING N N 60 GKC O2 H29 SING N N 61 GKC O3 H30 SING N N 62 GKC O4 H31 SING N N 63 GKC O6 H32 SING N N 64 GKC O8 H33 SING N N 65 GKC O9 H34 SING N N 66 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GKC InChI InChI 1.03 "InChI=1S/C19H34O11/c20-6-10-12(22)13(23)15(25)19(28-10)30-17-11(7-21)29-18(16(26)14(17)24)27-8-9-4-2-1-3-5-9/h9-26H,1-8H2/t10-,11-,12-,13+,14-,15-,16-,17-,18-,19-/m1/s1" GKC InChIKey InChI 1.03 BBUKPWNPDDHXDR-CRINDFDSSA-N GKC SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H](O[C@H]2[C@H](O)[C@@H](O)[C@H](OCC3CCCCC3)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O" GKC SMILES CACTVS 3.385 "OC[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](OCC3CCCCC3)O[CH]2CO)[CH](O)[CH](O)[CH]1O" GKC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)CO[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O" GKC SMILES "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)COC2C(C(C(C(O2)CO)OC3C(C(C(C(O3)CO)O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id GKC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{S},4~{R},5~{R},6~{R})-6-(cyclohexylmethoxy)-2-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GKC "Create component" 2020-09-03 PDBJ GKC "Initial release" 2021-02-17 RCSB ##