data_GKE # _chem_comp.id GKE _chem_comp.name ;GUANOSINE 5'-DIPHOSPHATE-BETA-L-GULOSE ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H25 N5 O16 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-10-25 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 605.341 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GKE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2C54 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GKE N2 N2 N 0 1 N N N 11.512 42.341 9.272 -9.849 0.802 -1.853 N2 GKE 1 GKE C2 C2 C 0 1 Y N N 11.218 43.576 8.853 -8.995 -0.088 -1.252 C2 GKE 2 GKE N1 N1 N 0 1 Y N N 9.930 43.964 8.931 -9.446 -1.339 -0.954 N1 GKE 3 GKE N3 N3 N 0 1 Y N N 12.211 44.338 8.420 -7.768 0.293 -0.975 N3 GKE 4 GKE C4 C4 C 0 1 Y N N 11.889 45.591 8.055 -6.901 -0.542 -0.389 C4 GKE 5 GKE C5 C5 C 0 1 Y N N 10.547 46.097 8.082 -7.302 -1.842 -0.064 C5 GKE 6 GKE C6 C6 C 0 1 Y N N 9.512 45.220 8.581 -8.625 -2.239 -0.368 C6 GKE 7 GKE O6 O6 O 0 1 N N N 8.268 45.520 8.689 -9.018 -3.362 -0.102 O6 GKE 8 GKE N7 N7 N 0 1 Y N N 10.601 47.413 7.681 -6.240 -2.459 0.510 N7 GKE 9 GKE C8 C8 C 0 1 Y N N 11.864 47.649 7.386 -5.235 -1.634 0.555 C8 GKE 10 GKE N9 N9 N 0 1 Y N N 12.641 46.552 7.601 -5.596 -0.435 0.010 N9 GKE 11 GKE "C1'" C1* C 0 1 N N R 14.099 46.560 7.434 -4.743 0.748 -0.122 "C1'" GKE 12 GKE "C2'" C2* C 0 1 N N R 14.837 46.138 8.721 -4.931 1.686 1.091 "C2'" GKE 13 GKE "O2'" O2* O 0 1 N N N 14.816 47.191 9.670 -5.833 2.749 0.775 "O2'" GKE 14 GKE "C3'" C3* C 0 1 N N S 16.237 45.905 8.132 -3.512 2.240 1.358 "C3'" GKE 15 GKE "O3'" O3* O 0 1 N N N 16.958 47.082 7.913 -3.494 3.662 1.214 "O3'" GKE 16 GKE "C4'" C4* C 0 1 N N R 15.917 45.323 6.769 -2.638 1.574 0.273 "C4'" GKE 17 GKE "O4'" O4* O 0 1 N N N 14.543 45.641 6.459 -3.350 0.370 -0.087 "O4'" GKE 18 GKE "C5'" C5* C 0 1 N N N 16.005 43.809 6.696 -1.258 1.229 0.836 "C5'" GKE 19 GKE "O5'" O5* O 0 1 N N N 15.400 43.221 7.828 -0.453 0.655 -0.196 "O5'" GKE 20 GKE PA PA P 0 1 N N R 15.212 41.642 8.028 0.977 0.318 0.463 PA GKE 21 GKE O1A O1A O 0 1 N N N 14.901 40.995 6.696 0.795 -0.819 1.588 O1A GKE 22 GKE O2A O2A O 0 1 N N N 14.283 41.418 9.170 1.536 1.540 1.082 O2A GKE 23 GKE O3A O3A O 0 1 N N N 16.638 41.139 8.542 1.982 -0.213 -0.678 O3A GKE 24 GKE PB PB P 0 1 N N S 18.185 41.488 8.264 3.466 -0.149 -0.058 PB GKE 25 GKE O2B O2B O 0 1 N N N 18.582 41.216 6.854 3.614 1.088 0.740 O2B GKE 26 GKE O3B O3B O 0 1 N N N 18.548 42.854 8.778 3.708 -1.430 0.888 O3B GKE 27 GKE O1B O1B O 0 1 N N N 18.921 40.552 9.267 4.547 -0.152 -1.251 O1B GKE 28 GKE C1G C1G C 0 1 N N R 18.659 39.238 9.189 5.830 0.025 -0.646 C1G GKE 29 GKE O5G O5G O 0 1 N N N 19.779 38.604 8.521 6.382 -1.250 -0.324 O5G GKE 30 GKE C5G C5G C 0 1 N N S 19.619 37.199 8.384 7.569 -1.028 0.435 C5G GKE 31 GKE C6G C6G C 0 1 N N N 20.826 36.817 7.562 8.092 -2.365 0.964 C6G GKE 32 GKE O6A O6A O 0 1 N N N 20.652 37.126 6.188 7.150 -2.913 1.887 O6A GKE 33 GKE C2G C2G C 0 1 N N S 18.617 38.734 10.642 6.755 0.758 -1.620 C2G GKE 34 GKE O2G O2G O 0 1 N N N 17.488 39.283 11.283 6.184 2.023 -1.961 O2G GKE 35 GKE C3G C3G C 0 1 N N S 18.424 37.229 10.593 8.116 0.974 -0.949 C3G GKE 36 GKE O3G O3G O 0 1 N N N 17.171 37.034 9.940 7.975 1.870 0.155 O3G GKE 37 GKE C4G C4G C 0 1 N N S 19.571 36.579 9.777 8.636 -0.379 -0.450 C4G GKE 38 GKE O4G O4G O 0 1 N N N 20.819 36.575 10.370 8.912 -1.228 -1.566 O4G GKE 39 GKE H2N1 1H2N H 0 0 N N N 12.487 42.047 9.213 -9.544 1.698 -2.067 H2N1 GKE 40 GKE HA2 2HA H 0 1 N N N 10.747 41.754 9.606 -10.757 0.535 -2.067 HA2 GKE 41 GKE HA HA H 0 1 N N N 9.237 43.294 9.265 -10.358 -1.588 -1.172 HA GKE 42 GKE HB HB H 0 1 N N N 12.244 48.615 7.012 -4.262 -1.862 0.962 HB GKE 43 GKE HC HC H 0 1 N N N 14.427 47.586 7.145 -4.970 1.276 -1.049 HC GKE 44 GKE HD HD H 0 1 N N N 14.412 45.199 9.145 -5.291 1.125 1.953 HD GKE 45 GKE "H2'" H2* H 0 1 N N N 15.271 46.931 10.463 -5.861 3.330 1.547 "H2'" GKE 46 GKE HE HE H 0 1 N N N 16.820 45.184 8.751 -3.171 1.954 2.353 HE GKE 47 GKE "H3'" H3* H 0 1 N N N 17.823 46.938 7.549 -4.054 4.021 1.915 "H3'" GKE 48 GKE HF HF H 0 1 N N N 16.588 45.775 6.002 -2.541 2.230 -0.592 HF GKE 49 GKE HA1 1HA H 0 1 N N N 17.056 43.461 6.561 -0.780 2.135 1.208 HA1 GKE 50 GKE HB2 2HB H 0 1 N N N 15.575 43.415 5.746 -1.366 0.514 1.652 HB2 GKE 51 GKE H1A H1A H 0 1 N N N 14.790 40.059 6.815 0.430 -1.596 1.144 H1A GKE 52 GKE H3B H3B H 0 1 N N N 19.461 43.060 8.614 3.602 -2.213 0.331 H3B GKE 53 GKE HG HG H 0 1 N N N 17.699 39.041 8.658 5.723 0.614 0.265 HG GKE 54 GKE HI HI H 0 1 N N N 18.682 36.969 7.826 7.345 -0.369 1.273 HI GKE 55 GKE HB1 1HB H 0 1 N N N 21.090 35.743 7.705 8.231 -3.055 0.132 HB1 GKE 56 GKE HC2 2HC H 0 1 N N N 21.755 37.282 7.967 9.046 -2.207 1.468 HC2 GKE 57 GKE H6A H6A H 0 1 N N N 21.412 36.886 5.671 7.518 -3.753 2.196 H6A GKE 58 GKE HH HH H 0 1 N N N 19.554 39.000 11.185 6.884 0.160 -2.522 HH GKE 59 GKE H2G H2G H 0 1 N N N 17.462 38.972 12.180 5.332 1.841 -2.379 H2G GKE 60 GKE H3G H3G H 0 1 N N N 18.394 36.807 11.625 8.818 1.391 -1.671 H3G GKE 61 GKE HJ HJ H 0 1 N N N 17.050 36.092 9.909 7.647 2.706 -0.203 HJ GKE 62 GKE H4G H4G H 0 1 N N N 19.288 35.510 9.635 9.548 -0.229 0.128 H4G GKE 63 GKE HK HK H 0 1 N N N 20.789 36.189 11.238 9.587 -0.783 -2.096 HK GKE 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GKE N2 C2 SING N N 1 GKE N2 H2N1 SING N N 2 GKE N2 HA2 SING N N 3 GKE C2 N1 SING Y N 4 GKE C2 N3 DOUB Y N 5 GKE N1 C6 SING Y N 6 GKE N1 HA SING N N 7 GKE N3 C4 SING Y N 8 GKE C4 C5 DOUB Y N 9 GKE C4 N9 SING Y N 10 GKE C5 C6 SING Y N 11 GKE C5 N7 SING Y N 12 GKE C6 O6 DOUB N N 13 GKE N7 C8 DOUB Y N 14 GKE C8 N9 SING Y N 15 GKE C8 HB SING N N 16 GKE N9 "C1'" SING N N 17 GKE "C1'" "C2'" SING N N 18 GKE "C1'" "O4'" SING N N 19 GKE "C1'" HC SING N N 20 GKE "C2'" "O2'" SING N N 21 GKE "C2'" "C3'" SING N N 22 GKE "C2'" HD SING N N 23 GKE "O2'" "H2'" SING N N 24 GKE "C3'" "O3'" SING N N 25 GKE "C3'" "C4'" SING N N 26 GKE "C3'" HE SING N N 27 GKE "O3'" "H3'" SING N N 28 GKE "C4'" "O4'" SING N N 29 GKE "C4'" "C5'" SING N N 30 GKE "C4'" HF SING N N 31 GKE "C5'" "O5'" SING N N 32 GKE "C5'" HA1 SING N N 33 GKE "C5'" HB2 SING N N 34 GKE "O5'" PA SING N N 35 GKE PA O1A SING N N 36 GKE PA O2A DOUB N N 37 GKE PA O3A SING N N 38 GKE O1A H1A SING N N 39 GKE O3A PB SING N N 40 GKE PB O2B DOUB N N 41 GKE PB O3B SING N N 42 GKE PB O1B SING N N 43 GKE O3B H3B SING N N 44 GKE O1B C1G SING N N 45 GKE C1G O5G SING N N 46 GKE C1G C2G SING N N 47 GKE C1G HG SING N N 48 GKE O5G C5G SING N N 49 GKE C5G C6G SING N N 50 GKE C5G C4G SING N N 51 GKE C5G HI SING N N 52 GKE C6G O6A SING N N 53 GKE C6G HB1 SING N N 54 GKE C6G HC2 SING N N 55 GKE O6A H6A SING N N 56 GKE C2G O2G SING N N 57 GKE C2G C3G SING N N 58 GKE C2G HH SING N N 59 GKE O2G H2G SING N N 60 GKE C3G O3G SING N N 61 GKE C3G C4G SING N N 62 GKE C3G H3G SING N N 63 GKE O3G HJ SING N N 64 GKE C4G O4G SING N N 65 GKE C4G H4G SING N N 66 GKE O4G HK SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GKE SMILES ACDLabs 10.04 "O=P(OC1OC(C(O)C(O)C1O)CO)(O)OP(=O)(O)OCC4OC(n2c3N=C(N)NC(=O)c3nc2)C(O)C4O" GKE SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@](O)(=O)O[C@H]4O[C@@H](CO)[C@@H](O)[C@H](O)[C@@H]4O)[C@@H](O)[C@H]3O" GKE SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[CH]4O[CH](CO)[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O" GKE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@@](=O)(O)O[C@@H]4[C@H]([C@H]([C@@H]([C@@H](O4)CO)O)O)O)O)O)N=C(NC2=O)N" GKE SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OC4C(C(C(C(O4)CO)O)O)O)O)O)N=C(NC2=O)N" GKE InChI InChI 1.03 "InChI=1S/C16H25N5O16P2/c17-16-19-12-6(13(28)20-16)18-3-21(12)14-10(26)8(24)5(34-14)2-33-38(29,30)37-39(31,32)36-15-11(27)9(25)7(23)4(1-22)35-15/h3-5,7-11,14-15,22-27H,1-2H2,(H,29,30)(H,31,32)(H3,17,19,20,28)/t4-,5+,7+,8+,9-,10+,11-,14+,15+/m0/s1" GKE InChIKey InChI 1.03 MVMSCBBUIHUTGJ-HVMPVDAASA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GKE "SYSTEMATIC NAME" ACDLabs 10.04 "[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S,5S,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)" GKE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[(2R,3S,4S,5S,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-phosphoryl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GKE "Create component" 2005-10-25 EBI GKE "Modify descriptor" 2011-06-04 RCSB #