data_GKH # _chem_comp.id GKH _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[[2-[(~{E})-2-(6-oxidanyl-1,3-benzothiazol-2-yl)ethenyl]-1,3-thiazol-4-yl]carbonyl]sulfamate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H20 N8 O8 S3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-09-21 _chem_comp.pdbx_modified_date 2019-10-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 632.649 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GKH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6HPS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GKH C2 C1 C 0 1 Y N N 46.945 -16.719 44.123 -7.602 3.921 0.021 C2 GKH 1 GKH C4 C2 C 0 1 Y N N 46.693 -14.451 44.665 -5.736 2.580 -0.028 C4 GKH 2 GKH C5 C3 C 0 1 Y N N 47.987 -14.372 45.011 -4.986 3.621 0.545 C5 GKH 3 GKH C6 C4 C 0 1 Y N N 48.762 -15.462 44.906 -5.644 4.828 0.839 C6 GKH 4 GKH N9 N1 N 0 1 Y N N 46.144 -13.254 44.851 -4.862 1.538 -0.206 N9 GKH 5 GKH NBO N2 N 0 1 Y N N 54.228 -8.671 48.067 6.293 0.177 -0.578 NBO GKH 6 GKH CAE C5 C 0 1 Y N N 55.383 -9.404 48.030 7.450 0.554 -1.132 CAE GKH 7 GKH CAD C6 C 0 1 Y N N 56.578 -9.166 48.642 8.003 0.165 -2.373 CAD GKH 8 GKH CAC C7 C 0 1 Y N N 57.684 -10.037 48.504 9.206 0.655 -2.780 CAC GKH 9 GKH CAB C8 C 0 1 Y N N 57.545 -11.189 47.710 9.916 1.549 -1.983 CAB GKH 10 GKH OAA O1 O 0 1 N N N 58.552 -12.100 47.508 11.116 2.030 -2.404 OAA GKH 11 GKH CBP C9 C 0 1 Y N N 56.310 -11.399 47.102 9.400 1.947 -0.765 CBP GKH 12 GKH CAF C10 C 0 1 Y N N 55.296 -10.537 47.262 8.170 1.454 -0.335 CAF GKH 13 GKH SAG S1 S 0 1 Y N N 53.946 -10.639 46.692 7.249 1.754 1.137 SAG GKH 14 GKH CAH C11 C 0 1 Y N N 53.319 -9.283 47.316 5.985 0.665 0.580 CAH GKH 15 GKH CAI C12 C 0 1 N N N 52.065 -8.939 47.051 4.759 0.357 1.321 CAI GKH 16 GKH CAJ C13 C 0 1 N N N 51.196 -8.403 48.152 3.852 -0.496 0.800 CAJ GKH 17 GKH CAK C14 C 0 1 Y N N 49.938 -8.092 47.827 2.626 -0.805 1.541 CAK GKH 18 GKH NAL N3 N 0 1 Y N N 48.992 -8.783 47.113 1.689 -1.614 1.138 NAL GKH 19 GKH SBN S2 S 0 1 Y N N 49.388 -6.788 48.270 2.198 -0.146 3.115 SBN GKH 20 GKH CBM C15 C 0 1 Y N N 47.852 -6.944 47.595 0.736 -1.033 3.110 CBM GKH 21 GKH CAM C16 C 0 1 Y N N 47.800 -8.131 46.978 0.659 -1.757 1.957 CAM GKH 22 GKH CAN C17 C 0 1 N N N 46.688 -8.572 46.321 -0.484 -2.635 1.647 CAN GKH 23 GKH OBL O2 O 0 1 N N N 46.715 -9.056 45.216 -1.406 -2.733 2.433 OBL GKH 24 GKH NAO N4 N 0 1 N N N 45.531 -8.497 46.927 -0.506 -3.331 0.493 NAO GKH 25 GKH SAP S3 S 0 1 N N N 44.158 -7.964 46.183 -1.789 -4.317 0.145 SAP GKH 26 GKH OBJ O3 O 0 1 N N N 43.282 -7.173 47.195 -1.532 -4.873 -1.138 OBJ GKH 27 GKH OBK O4 O 0 1 N N N 44.412 -6.982 45.081 -2.013 -5.108 1.304 OBK GKH 28 GKH "O5'" O5 O 0 1 N N N 43.427 -9.200 45.620 -3.013 -3.426 -0.011 "O5'" GKH 29 GKH "C5'" C18 C 0 1 N N N 43.021 -10.309 46.462 -3.048 -2.695 -1.238 "C5'" GKH 30 GKH "C4'" C19 C 0 1 N N R 43.100 -11.618 45.710 -4.315 -1.838 -1.285 "C4'" GKH 31 GKH "O4'" O6 O 0 1 N N N 44.297 -11.614 44.897 -4.231 -0.763 -0.325 "O4'" GKH 32 GKH "C3'" C20 C 0 1 N N S 43.388 -12.796 46.631 -4.437 -1.135 -2.655 "C3'" GKH 33 GKH "O3'" O7 O 0 1 N N N 42.287 -13.198 47.464 -5.328 -1.854 -3.510 "O3'" GKH 34 GKH "C2'" C21 C 0 1 N N R 43.751 -13.826 45.525 -5.020 0.255 -2.313 "C2'" GKH 35 GKH "O2'" O8 O 0 1 N N N 42.618 -14.381 44.795 -6.287 0.437 -2.948 "O2'" GKH 36 GKH "C1'" C22 C 0 1 N N R 44.657 -12.997 44.577 -5.181 0.227 -0.777 "C1'" GKH 37 GKH C8 C23 C 0 1 Y N N 47.105 -12.431 45.321 -3.642 1.946 0.244 C8 GKH 38 GKH N7 N5 N 0 1 Y N N 48.240 -13.111 45.414 -3.717 3.169 0.684 N7 GKH 39 GKH N3 N6 N 0 1 Y N N 46.150 -15.597 44.226 -7.029 2.772 -0.270 N3 GKH 40 GKH N1 N7 N 0 1 Y N N 48.278 -16.631 44.475 -6.939 4.927 0.561 N1 GKH 41 GKH N6 N8 N 0 1 N N N 50.041 -15.328 45.254 -4.957 5.888 1.404 N6 GKH 42 GKH H1 H1 H 0 1 N N N 46.532 -17.653 43.772 -8.653 4.045 -0.192 H1 GKH 43 GKH H2 H2 H 0 1 N N N 56.684 -8.282 49.253 7.467 -0.527 -3.004 H2 GKH 44 GKH H3 H3 H 0 1 N N N 58.619 -9.821 49.000 9.614 0.347 -3.731 H3 GKH 45 GKH H4 H4 H 0 1 N N N 59.328 -11.825 47.982 11.054 2.846 -2.920 H4 GKH 46 GKH H5 H5 H 0 1 N N N 56.166 -12.276 46.488 9.950 2.641 -0.146 H5 GKH 47 GKH H6 H6 H 0 1 N N N 51.672 -9.044 46.050 4.582 0.811 2.285 H6 GKH 48 GKH H7 H7 H 0 1 N N N 51.570 -8.275 49.157 4.030 -0.951 -0.163 H7 GKH 49 GKH H8 H8 H 0 1 N N N 47.054 -6.218 47.650 -0.006 -1.024 3.895 H8 GKH 50 GKH H9 H9 H 0 1 N N N 45.476 -8.776 47.886 0.231 -3.253 -0.134 H9 GKH 51 GKH H10 H10 H 0 1 N N N 43.684 -10.357 47.338 -2.171 -2.051 -1.302 H10 GKH 52 GKH H11 H11 H 0 1 N N N 41.985 -10.147 46.795 -3.049 -3.392 -2.076 H11 GKH 53 GKH H12 H12 H 0 1 N N N 42.192 -11.793 45.115 -5.195 -2.452 -1.094 H12 GKH 54 GKH H13 H13 H 0 1 N N N 44.281 -12.583 47.237 -3.457 -1.036 -3.123 H13 GKH 55 GKH H14 H14 H 0 1 N N N 42.120 -12.526 48.115 -5.442 -1.457 -4.384 H14 GKH 56 GKH H15 H15 H 0 1 N N N 44.348 -14.634 45.973 -4.328 1.043 -2.610 H15 GKH 57 GKH H16 H16 H 0 1 N N N 42.074 -14.885 45.389 -6.251 0.403 -3.914 H16 GKH 58 GKH H17 H17 H 0 1 N N N 44.419 -13.236 43.530 -6.194 -0.068 -0.505 H17 GKH 59 GKH H18 H18 H 0 1 N N N 46.972 -11.391 45.579 -2.745 1.345 0.236 H18 GKH 60 GKH H19 H19 H 0 1 N N N 50.513 -16.202 45.135 -4.012 5.803 1.603 H19 GKH 61 GKH H20 H20 H 0 1 N N N 50.473 -14.635 44.676 -5.422 6.716 1.602 H20 GKH 62 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GKH C2 N3 DOUB Y N 1 GKH C2 N1 SING Y N 2 GKH N3 C4 SING Y N 3 GKH N1 C6 DOUB Y N 4 GKH "C1'" N9 SING N N 5 GKH "C1'" "O4'" SING N N 6 GKH "C1'" "C2'" SING N N 7 GKH C4 N9 SING Y N 8 GKH C4 C5 DOUB Y N 9 GKH "O2'" "C2'" SING N N 10 GKH N9 C8 SING Y N 11 GKH "O4'" "C4'" SING N N 12 GKH C6 C5 SING Y N 13 GKH C6 N6 SING N N 14 GKH C5 N7 SING Y N 15 GKH OBK SAP DOUB N N 16 GKH OBL CAN DOUB N N 17 GKH C8 N7 DOUB Y N 18 GKH "C2'" "C3'" SING N N 19 GKH "O5'" SAP SING N N 20 GKH "O5'" "C5'" SING N N 21 GKH "C4'" "C5'" SING N N 22 GKH "C4'" "C3'" SING N N 23 GKH SAP NAO SING N N 24 GKH SAP OBJ DOUB N N 25 GKH CAN NAO SING N N 26 GKH CAN CAM SING N N 27 GKH "C3'" "O3'" SING N N 28 GKH SAG CAF SING Y N 29 GKH SAG CAH SING Y N 30 GKH CAM NAL SING Y N 31 GKH CAM CBM DOUB Y N 32 GKH CAI CAH SING N N 33 GKH CAI CAJ DOUB N E 34 GKH CBP CAF DOUB Y N 35 GKH CBP CAB SING Y N 36 GKH NAL CAK DOUB Y N 37 GKH CAF CAE SING Y N 38 GKH CAH NBO DOUB Y N 39 GKH OAA CAB SING N N 40 GKH CBM SBN SING Y N 41 GKH CAB CAC DOUB Y N 42 GKH CAK CAJ SING N N 43 GKH CAK SBN SING Y N 44 GKH CAE NBO SING Y N 45 GKH CAE CAD DOUB Y N 46 GKH CAC CAD SING Y N 47 GKH C2 H1 SING N N 48 GKH CAD H2 SING N N 49 GKH CAC H3 SING N N 50 GKH OAA H4 SING N N 51 GKH CBP H5 SING N N 52 GKH CAI H6 SING N N 53 GKH CAJ H7 SING N N 54 GKH CBM H8 SING N N 55 GKH NAO H9 SING N N 56 GKH "C5'" H10 SING N N 57 GKH "C5'" H11 SING N N 58 GKH "C4'" H12 SING N N 59 GKH "C3'" H13 SING N N 60 GKH "O3'" H14 SING N N 61 GKH "C2'" H15 SING N N 62 GKH "O2'" H16 SING N N 63 GKH "C1'" H17 SING N N 64 GKH C8 H18 SING N N 65 GKH N6 H19 SING N N 66 GKH N6 H20 SING N N 67 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GKH InChI InChI 1.03 "InChI=1S/C23H20N8O8S3/c24-20-17-21(26-8-25-20)31(9-27-17)23-19(34)18(33)13(39-23)6-38-42(36,37)30-22(35)12-7-40-15(29-12)3-4-16-28-11-2-1-10(32)5-14(11)41-16/h1-5,7-9,13,18-19,23,32-34H,6H2,(H,30,35)(H2,24,25,26)/b4-3+/t13-,18-,19-,23-/m1/s1" GKH InChIKey InChI 1.03 JXXQGJFRVFVJAK-AWGXURSZSA-N GKH SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[S](=O)(=O)NC(=O)c4csc(/C=C/c5sc6cc(O)ccc6n5)n4)[C@@H](O)[C@H]3O" GKH SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[S](=O)(=O)NC(=O)c4csc(C=Cc5sc6cc(O)ccc6n5)n4)[CH](O)[CH]3O" GKH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc2c(cc1O)sc(n2)/C=C/c3nc(cs3)C(=O)NS(=O)(=O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O" GKH SMILES "OpenEye OEToolkits" 2.0.6 "c1cc2c(cc1O)sc(n2)C=Cc3nc(cs3)C(=O)NS(=O)(=O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O" # _pdbx_chem_comp_identifier.comp_id GKH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[[2-[(~{E})-2-(6-oxidanyl-1,3-benzothiazol-2-yl)ethenyl]-1,3-thiazol-4-yl]carbonyl]sulfamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GKH "Create component" 2018-09-21 EBI GKH "Other modification" 2018-09-21 EBI GKH "Initial release" 2019-10-23 RCSB ##