data_GKQ # _chem_comp.id GKQ _chem_comp.name "~{N}-[(3-chlorophenyl)methyl]-1-(2-pyrrolidin-1-ylethyl)benzimidazole-5-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H23 Cl N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-09-23 _chem_comp.pdbx_modified_date 2018-11-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 382.887 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GKQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6HPX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GKQ C C1 C 0 1 Y N N 3.143 16.802 12.925 -1.901 2.480 -0.220 C GKQ 1 GKQ N N1 N 0 1 Y N N 4.173 17.697 13.219 -3.030 3.227 -0.335 N GKQ 2 GKQ O O1 O 0 1 N N N -1.299 15.450 12.718 2.106 3.221 0.685 O GKQ 3 GKQ C1 C2 C 0 1 Y N N 3.528 15.957 11.889 -2.265 1.145 -0.480 C1 GKQ 4 GKQ C2 C3 C 0 1 Y N N 5.128 17.378 12.383 -4.031 2.458 -0.646 C2 GKQ 5 GKQ C3 C4 C 0 1 N N N 5.707 15.689 10.596 -4.454 0.009 -1.071 C3 GKQ 6 GKQ C12 C5 C 0 1 N N N -0.371 15.550 13.518 1.776 2.075 0.452 C12 GKQ 7 GKQ N3 N2 N 0 1 N N N -0.567 15.601 14.841 2.693 1.088 0.491 N3 GKQ 8 GKQ C13 C6 C 0 1 N N N -1.873 15.887 15.422 4.089 1.398 0.813 C13 GKQ 9 GKQ C14 C7 C 0 1 Y N N -1.802 16.748 16.658 4.902 0.129 0.791 C14 GKQ 10 GKQ C17 C8 C 0 1 Y N N -2.662 16.532 17.734 5.040 -0.624 1.942 C17 GKQ 11 GKQ C18 C9 C 0 1 Y N N -2.605 17.336 18.861 5.786 -1.788 1.921 C18 GKQ 12 GKQ C19 C10 C 0 1 Y N N -1.689 18.373 18.936 6.395 -2.198 0.751 C19 GKQ 13 GKQ C16 C11 C 0 1 Y N N -0.845 18.590 17.861 6.258 -1.444 -0.401 C16 GKQ 14 GKQ CL CL1 CL 0 0 N N N 0.288 19.922 17.914 7.023 -1.959 -1.872 CL GKQ 15 GKQ C15 C12 C 0 1 Y N N -0.886 17.793 16.733 5.506 -0.283 -0.382 C15 GKQ 16 GKQ C11 C13 C 0 1 Y N N 1.043 15.637 13.040 0.369 1.763 0.128 C11 GKQ 17 GKQ C10 C14 C 0 1 Y N N 1.889 16.646 13.513 -0.576 2.783 0.088 C10 GKQ 18 GKQ C20 C15 C 0 1 Y N N 1.473 14.778 12.018 -0.009 0.440 -0.138 C20 GKQ 19 GKQ C9 C16 C 0 1 Y N N 2.713 14.940 11.422 -1.307 0.139 -0.435 C9 GKQ 20 GKQ N1 N3 N 0 1 Y N N 4.820 16.344 11.560 -3.617 1.165 -0.743 N1 GKQ 21 GKQ C4 C17 C 0 1 N N N 5.759 16.443 9.291 -4.919 -0.668 0.220 C4 GKQ 22 GKQ N2 N4 N 0 1 N N N 6.714 15.855 8.352 -5.758 -1.828 -0.109 N2 GKQ 23 GKQ C7 C18 C 0 1 N N N 6.159 14.745 7.569 -6.029 -2.642 1.090 C7 GKQ 24 GKQ C8 C19 C 0 1 N N N 7.194 14.514 6.483 -7.562 -2.739 1.240 C8 GKQ 25 GKQ C6 C20 C 0 1 N N N 7.869 15.894 6.301 -8.073 -2.453 -0.197 C6 GKQ 26 GKQ C5 C21 C 0 1 N N N 7.208 16.793 7.341 -7.049 -1.400 -0.689 C5 GKQ 27 GKQ H1 H1 H 0 1 N N N 6.077 17.892 12.351 -5.046 2.795 -0.799 H1 GKQ 28 GKQ H2 H2 H 0 1 N N N 5.338 14.670 10.406 -5.323 0.339 -1.641 H2 GKQ 29 GKQ H3 H3 H 0 1 N N N 6.721 15.638 11.020 -3.878 -0.700 -1.665 H3 GKQ 30 GKQ H4 H4 H 0 1 N N N 0.208 15.437 15.451 2.430 0.173 0.306 H4 GKQ 31 GKQ H5 H5 H 0 1 N N N -2.483 16.407 14.669 4.485 2.097 0.078 H5 GKQ 32 GKQ H6 H6 H 0 1 N N N -2.353 14.934 15.688 4.141 1.845 1.806 H6 GKQ 33 GKQ H7 H7 H 0 1 N N N -3.382 15.728 17.688 4.564 -0.304 2.857 H7 GKQ 34 GKQ H8 H8 H 0 1 N N N -3.278 17.153 19.686 5.893 -2.376 2.821 H8 GKQ 35 GKQ H9 H9 H 0 1 N N N -1.635 18.999 19.815 6.979 -3.107 0.735 H9 GKQ 36 GKQ H10 H10 H 0 1 N N N -0.209 17.980 15.912 5.396 0.304 -1.282 H10 GKQ 37 GKQ H11 H11 H 0 1 N N N 1.576 17.293 14.319 -0.285 3.803 0.294 H11 GKQ 38 GKQ H12 H12 H 0 1 N N N 0.827 13.977 11.690 0.730 -0.346 -0.105 H12 GKQ 39 GKQ H13 H13 H 0 1 N N N 3.034 14.293 10.619 -1.590 -0.884 -0.635 H13 GKQ 40 GKQ H14 H14 H 0 1 N N N 6.056 17.483 9.494 -4.051 -0.998 0.790 H14 GKQ 41 GKQ H15 H15 H 0 1 N N N 4.759 16.430 8.834 -5.496 0.041 0.814 H15 GKQ 42 GKQ H17 H17 H 0 1 N N N 5.188 15.021 7.132 -5.605 -3.638 0.965 H17 GKQ 43 GKQ H18 H18 H 0 1 N N N 6.039 13.847 8.193 -5.597 -2.162 1.969 H18 GKQ 44 GKQ H19 H19 H 0 1 N N N 6.713 14.189 5.549 -7.855 -3.738 1.562 H19 GKQ 45 GKQ H20 H20 H 0 1 N N N 7.929 13.759 6.799 -7.929 -1.987 1.939 H20 GKQ 46 GKQ H21 H21 H 0 1 N N N 8.952 15.823 6.483 -8.033 -3.353 -0.811 H21 GKQ 47 GKQ H22 H22 H 0 1 N N N 7.692 16.281 5.286 -9.081 -2.039 -0.178 H22 GKQ 48 GKQ H23 H23 H 0 1 N N N 7.939 17.490 7.777 -7.319 -0.409 -0.324 H23 GKQ 49 GKQ H24 H24 H 0 1 N N N 6.378 17.362 6.896 -6.996 -1.403 -1.778 H24 GKQ 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GKQ C6 C8 SING N N 1 GKQ C6 C5 SING N N 2 GKQ C8 C7 SING N N 3 GKQ C5 N2 SING N N 4 GKQ C7 N2 SING N N 5 GKQ N2 C4 SING N N 6 GKQ C4 C3 SING N N 7 GKQ C3 N1 SING N N 8 GKQ C9 C1 DOUB Y N 9 GKQ C9 C20 SING Y N 10 GKQ N1 C1 SING Y N 11 GKQ N1 C2 SING Y N 12 GKQ C1 C SING Y N 13 GKQ C20 C11 DOUB Y N 14 GKQ C2 N DOUB Y N 15 GKQ O C12 DOUB N N 16 GKQ C N SING Y N 17 GKQ C C10 DOUB Y N 18 GKQ C11 C10 SING Y N 19 GKQ C11 C12 SING N N 20 GKQ C12 N3 SING N N 21 GKQ N3 C13 SING N N 22 GKQ C13 C14 SING N N 23 GKQ C14 C15 DOUB Y N 24 GKQ C14 C17 SING Y N 25 GKQ C15 C16 SING Y N 26 GKQ C17 C18 DOUB Y N 27 GKQ C16 CL SING N N 28 GKQ C16 C19 DOUB Y N 29 GKQ C18 C19 SING Y N 30 GKQ C2 H1 SING N N 31 GKQ C3 H2 SING N N 32 GKQ C3 H3 SING N N 33 GKQ N3 H4 SING N N 34 GKQ C13 H5 SING N N 35 GKQ C13 H6 SING N N 36 GKQ C17 H7 SING N N 37 GKQ C18 H8 SING N N 38 GKQ C19 H9 SING N N 39 GKQ C15 H10 SING N N 40 GKQ C10 H11 SING N N 41 GKQ C20 H12 SING N N 42 GKQ C9 H13 SING N N 43 GKQ C4 H14 SING N N 44 GKQ C4 H15 SING N N 45 GKQ C7 H17 SING N N 46 GKQ C7 H18 SING N N 47 GKQ C8 H19 SING N N 48 GKQ C8 H20 SING N N 49 GKQ C6 H21 SING N N 50 GKQ C6 H22 SING N N 51 GKQ C5 H23 SING N N 52 GKQ C5 H24 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GKQ InChI InChI 1.03 "InChI=1S/C21H23ClN4O/c22-18-5-3-4-16(12-18)14-23-21(27)17-6-7-20-19(13-17)24-15-26(20)11-10-25-8-1-2-9-25/h3-7,12-13,15H,1-2,8-11,14H2,(H,23,27)" GKQ InChIKey InChI 1.03 KDORBCZWJTXUAC-UHFFFAOYSA-N GKQ SMILES_CANONICAL CACTVS 3.385 "Clc1cccc(CNC(=O)c2ccc3n(CCN4CCCC4)cnc3c2)c1" GKQ SMILES CACTVS 3.385 "Clc1cccc(CNC(=O)c2ccc3n(CCN4CCCC4)cnc3c2)c1" GKQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(cc(c1)Cl)CNC(=O)c2ccc3c(c2)ncn3CCN4CCCC4" GKQ SMILES "OpenEye OEToolkits" 2.0.6 "c1cc(cc(c1)Cl)CNC(=O)c2ccc3c(c2)ncn3CCN4CCCC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GKQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[(3-chlorophenyl)methyl]-1-(2-pyrrolidin-1-ylethyl)benzimidazole-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GKQ "Create component" 2018-09-23 EBI GKQ "Initial release" 2018-11-28 RCSB #