data_GKT # _chem_comp.id GKT _chem_comp.name "3-iodanyl-4-methyl-~{N}-[2-(piperidin-1-ylmethyl)-3~{H}-benzimidazol-5-yl]benzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H23 I N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-09-24 _chem_comp.pdbx_modified_date 2018-11-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 474.338 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GKT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6HPW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GKT C1 C1 C 0 1 Y N N 3.914 14.926 12.282 -5.195 -1.693 -0.412 C1 GKT 1 GKT C2 C2 C 0 1 Y N N 2.904 14.008 11.987 -4.374 -2.806 -0.399 C2 GKT 2 GKT C3 C3 C 0 1 Y N N 1.692 14.010 12.655 -3.018 -2.664 -0.188 C3 GKT 3 GKT C4 C4 C 0 1 Y N N 1.444 14.932 13.660 -2.474 -1.395 0.012 C4 GKT 4 GKT C5 C5 C 0 1 Y N N 2.441 15.853 13.984 -3.308 -0.275 -0.003 C5 GKT 5 GKT C6 C6 C 0 1 Y N N 3.643 15.868 13.280 -4.663 -0.431 -0.215 C6 GKT 6 GKT C7 C7 C 0 1 N N N 0.087 14.976 14.283 -1.023 -1.236 0.239 C7 GKT 7 GKT O O1 O 0 1 N N N -0.922 14.786 13.614 -0.299 -2.212 0.252 O GKT 8 GKT I I1 I 0 1 N N N 4.957 17.529 13.566 -5.917 1.248 -0.237 I GKT 9 GKT C C8 C 0 1 N N N 5.231 14.842 11.559 -6.674 -1.855 -0.650 C GKT 10 GKT N N1 N 0 1 N N N 0.057 15.235 15.602 -0.501 -0.008 0.432 N GKT 11 GKT C8 C9 C 0 1 Y N N -1.066 15.274 16.438 0.856 0.135 0.743 C8 GKT 12 GKT C20 C10 C 0 1 Y N N -2.297 14.754 16.029 1.786 -0.725 0.183 C20 GKT 13 GKT C19 C11 C 0 1 Y N N -3.335 14.694 16.949 3.130 -0.579 0.495 C19 GKT 14 GKT C11 C12 C 0 1 Y N N -3.144 15.172 18.240 3.539 0.437 1.375 C11 GKT 15 GKT C10 C13 C 0 1 Y N N -1.935 15.707 18.652 2.585 1.295 1.930 C10 GKT 16 GKT C9 C14 C 0 1 Y N N -0.896 15.758 17.737 1.266 1.145 1.612 C9 GKT 17 GKT N3 N2 N 0 1 Y N N -4.627 14.206 16.822 4.280 -1.246 0.122 N3 GKT 18 GKT C12 C15 C 0 1 Y N N -5.187 14.407 18.001 5.322 -0.644 0.758 C12 GKT 19 GKT N1 N3 N 0 1 Y N N -4.344 14.974 18.890 4.889 0.340 1.491 N1 GKT 20 GKT C13 C16 C 0 1 N N N -6.626 14.152 18.317 6.766 -1.056 0.632 C13 GKT 21 GKT N2 N4 N 0 1 N N N -6.829 12.910 19.074 7.420 -0.240 -0.399 N2 GKT 22 GKT C18 C17 C 0 1 N N N -8.276 12.620 19.205 8.754 -0.766 -0.718 C18 GKT 23 GKT C17 C18 C 0 1 N N N -8.540 11.266 19.833 9.344 0.018 -1.893 C17 GKT 24 GKT C16 C19 C 0 1 N N N -7.661 11.046 21.050 9.435 1.499 -1.518 C16 GKT 25 GKT C15 C20 C 0 1 N N N -7.057 12.355 21.513 8.041 2.010 -1.143 C15 GKT 26 GKT C14 C21 C 0 1 N N N -6.223 13.003 20.413 7.488 1.169 0.010 C14 GKT 27 GKT H1 H1 H 0 1 N N N 3.074 13.274 11.214 -4.795 -3.789 -0.554 H1 GKT 28 GKT H2 H2 H 0 1 N N N 0.934 13.288 12.391 -2.378 -3.534 -0.177 H2 GKT 29 GKT H3 H3 H 0 1 N N N 2.280 16.559 14.786 -2.894 0.710 0.152 H3 GKT 30 GKT H4 H4 H 0 1 N N N 5.194 15.468 10.655 -6.879 -1.800 -1.719 H4 GKT 31 GKT H5 H5 H 0 1 N N N 6.035 15.198 12.220 -7.000 -2.823 -0.267 H5 GKT 32 GKT H6 H6 H 0 1 N N N 5.427 13.798 11.274 -7.214 -1.061 -0.134 H6 GKT 33 GKT H7 H7 H 0 1 N N N 0.938 15.421 16.036 -1.066 0.777 0.356 H7 GKT 34 GKT H8 H8 H 0 1 N N N -2.438 14.405 15.017 1.467 -1.504 -0.493 H8 GKT 35 GKT H9 H9 H 0 1 N N N -1.806 16.075 19.659 2.892 2.078 2.607 H9 GKT 36 GKT H10 H10 H 0 1 N N N 0.055 16.176 18.031 0.533 1.813 2.040 H10 GKT 37 GKT H11 H11 H 0 1 N N N -5.044 13.792 16.013 4.335 -2.003 -0.482 H11 GKT 38 GKT H13 H13 H 0 1 N N N -7.010 14.994 18.912 7.270 -0.909 1.587 H13 GKT 39 GKT H14 H14 H 0 1 N N N -7.187 14.084 17.373 6.820 -2.108 0.352 H14 GKT 40 GKT H16 H16 H 0 1 N N N -8.736 13.397 19.834 9.403 -0.661 0.151 H16 GKT 41 GKT H17 H17 H 0 1 N N N -8.732 12.640 18.204 8.674 -1.819 -0.987 H17 GKT 42 GKT H18 H18 H 0 1 N N N -9.595 11.211 20.138 10.340 -0.362 -2.119 H18 GKT 43 GKT H19 H19 H 0 1 N N N -8.331 10.480 19.092 8.703 -0.098 -2.766 H19 GKT 44 GKT H20 H20 H 0 1 N N N -8.268 10.620 21.863 10.108 1.619 -0.668 H20 GKT 45 GKT H21 H21 H 0 1 N N N -6.853 10.346 20.791 9.815 2.067 -2.367 H21 GKT 46 GKT H22 H22 H 0 1 N N N -6.413 12.164 22.384 8.106 3.053 -0.834 H22 GKT 47 GKT H23 H23 H 0 1 N N N -7.867 13.042 21.799 7.379 1.926 -2.005 H23 GKT 48 GKT H24 H24 H 0 1 N N N -5.241 12.507 20.385 6.490 1.520 0.270 H24 GKT 49 GKT H25 H25 H 0 1 N N N -6.090 14.067 20.660 8.144 1.264 0.876 H25 GKT 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GKT C C1 SING N N 1 GKT C2 C1 DOUB Y N 2 GKT C2 C3 SING Y N 3 GKT C1 C6 SING Y N 4 GKT C3 C4 DOUB Y N 5 GKT C6 I SING N N 6 GKT C6 C5 DOUB Y N 7 GKT O C7 DOUB N N 8 GKT C4 C5 SING Y N 9 GKT C4 C7 SING N N 10 GKT C7 N SING N N 11 GKT N C8 SING N N 12 GKT C20 C8 DOUB Y N 13 GKT C20 C19 SING Y N 14 GKT C8 C9 SING Y N 15 GKT N3 C19 SING Y N 16 GKT N3 C12 SING Y N 17 GKT C19 C11 DOUB Y N 18 GKT C9 C10 DOUB Y N 19 GKT C12 C13 SING N N 20 GKT C12 N1 DOUB Y N 21 GKT C11 C10 SING Y N 22 GKT C11 N1 SING Y N 23 GKT C13 N2 SING N N 24 GKT N2 C18 SING N N 25 GKT N2 C14 SING N N 26 GKT C18 C17 SING N N 27 GKT C17 C16 SING N N 28 GKT C14 C15 SING N N 29 GKT C16 C15 SING N N 30 GKT C2 H1 SING N N 31 GKT C3 H2 SING N N 32 GKT C5 H3 SING N N 33 GKT C H4 SING N N 34 GKT C H5 SING N N 35 GKT C H6 SING N N 36 GKT N H7 SING N N 37 GKT C20 H8 SING N N 38 GKT C10 H9 SING N N 39 GKT C9 H10 SING N N 40 GKT N3 H11 SING N N 41 GKT C13 H13 SING N N 42 GKT C13 H14 SING N N 43 GKT C18 H16 SING N N 44 GKT C18 H17 SING N N 45 GKT C17 H18 SING N N 46 GKT C17 H19 SING N N 47 GKT C16 H20 SING N N 48 GKT C16 H21 SING N N 49 GKT C15 H22 SING N N 50 GKT C15 H23 SING N N 51 GKT C14 H24 SING N N 52 GKT C14 H25 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GKT InChI InChI 1.03 "InChI=1S/C21H23IN4O/c1-14-5-6-15(11-17(14)22)21(27)23-16-7-8-18-19(12-16)25-20(24-18)13-26-9-3-2-4-10-26/h5-8,11-12H,2-4,9-10,13H2,1H3,(H,23,27)(H,24,25)" GKT InChIKey InChI 1.03 VMKBJIIRNPWSSI-UHFFFAOYSA-N GKT SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(cc1I)C(=O)Nc2ccc3nc(CN4CCCCC4)[nH]c3c2" GKT SMILES CACTVS 3.385 "Cc1ccc(cc1I)C(=O)Nc2ccc3nc(CN4CCCCC4)[nH]c3c2" GKT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1ccc(cc1I)C(=O)Nc2ccc3c(c2)[nH]c(n3)CN4CCCCC4" GKT SMILES "OpenEye OEToolkits" 2.0.6 "Cc1ccc(cc1I)C(=O)Nc2ccc3c(c2)[nH]c(n3)CN4CCCCC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GKT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "3-iodanyl-4-methyl-~{N}-[2-(piperidin-1-ylmethyl)-3~{H}-benzimidazol-5-yl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GKT "Create component" 2018-09-24 EBI GKT "Initial release" 2018-11-28 RCSB #