data_GL1 # _chem_comp.id GL1 _chem_comp.name 1-O-phosphono-alpha-D-galactopyranose _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H13 O9 P" _chem_comp.mon_nstd_parent_comp_id GLA _chem_comp.pdbx_synonyms "ALPHA-D-GALACTOSE-1-PHOSPHATE; 1-O-phosphono-alpha-D-galactose; 1-O-phosphono-D-galactose; 1-O-phosphono-galactose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-04-14 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 260.136 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GL1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1Z4O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 GL1 ALPHA-D-GALACTOSE-1-PHOSPHATE PDB ? 2 GL1 1-O-phosphono-alpha-D-galactose PDB ? 3 GL1 1-O-phosphono-D-galactose PDB ? 4 GL1 1-O-phosphono-galactose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GL1 C1 C1 C 0 1 N N R 4.863 -3.834 13.102 0.101 -0.506 0.672 C1 GL1 1 GL1 C2 C2 C 0 1 N N R 3.710 -2.825 13.043 -1.034 -1.522 0.526 C2 GL1 2 GL1 C3 C3 C 0 1 N N S 3.959 -1.779 11.965 -1.905 -1.130 -0.672 C3 GL1 3 GL1 C4 C4 C 0 1 N N R 5.355 -1.056 12.200 -2.352 0.326 -0.496 C4 GL1 4 GL1 C5 C5 C 0 1 N N R 6.445 -2.161 12.292 -1.118 1.203 -0.274 C5 GL1 5 GL1 C6 C6 C 0 1 N N N 7.826 -1.537 12.667 -1.551 2.664 -0.132 C6 GL1 6 GL1 O1 O1 O 0 1 N N N 5.027 -4.499 11.861 0.874 -0.483 -0.530 O1 GL1 7 GL1 O2 O2 O 0 1 N N N 2.450 -3.519 12.800 -0.484 -2.824 0.314 O2 GL1 8 GL1 O3 O3 O 0 1 N N N 2.897 -0.831 11.948 -3.051 -1.982 -0.732 O3 GL1 9 GL1 O4 O4 O 0 1 N N N 5.270 -0.213 13.376 -3.223 0.425 0.633 O4 GL1 10 GL1 O5 O5 O 0 1 N N N 6.103 -3.109 13.326 -0.441 0.792 0.912 O5 GL1 11 GL1 O6 O6 O 0 1 N N N 8.112 -0.617 11.680 -0.393 3.497 -0.045 O6 GL1 12 GL1 P P P 0 1 N N N 4.367 -5.967 11.546 2.380 -0.102 -0.107 P GL1 13 GL1 O1P O1P O 0 1 N N N 4.814 -6.488 10.139 2.992 -1.274 0.810 O1P GL1 14 GL1 O2P O2P O 0 1 N N N 4.919 -6.873 12.679 3.281 0.071 -1.430 O2P GL1 15 GL1 O3P O3P O 0 1 N N N 2.802 -5.912 11.651 2.373 1.167 0.654 O3P GL1 16 GL1 H1 H1 H 0 1 N N N 4.632 -4.565 13.910 0.739 -0.792 1.508 H1 GL1 17 GL1 H2 H2 H 0 1 N N N 3.649 -2.300 14.024 -1.639 -1.525 1.432 H2 GL1 18 GL1 H3 H3 H 0 1 N N N 3.995 -2.288 10.973 -1.329 -1.228 -1.592 H3 GL1 19 GL1 H4 H4 H 0 1 N N N 5.629 -0.376 11.359 -2.878 0.657 -1.392 H4 GL1 20 GL1 H5 H5 H 0 1 N N N 6.504 -2.663 11.298 -0.446 1.105 -1.127 H5 GL1 21 GL1 H61 H61 H 0 1 N N N 7.854 -1.107 13.695 -2.150 2.779 0.771 H61 GL1 22 GL1 H62 H62 H 0 1 N N N 8.630 -2.295 12.813 -2.143 2.953 -1.001 H62 GL1 23 GL1 HO2 HO2 H 0 1 N Y N 1.735 -2.893 12.763 0.060 -3.027 1.086 HO2 GL1 24 GL1 HO3 HO3 H 0 1 N Y N 3.052 -0.178 11.275 -2.721 -2.886 -0.830 HO3 GL1 25 GL1 HO4 HO4 H 0 1 N Y N 6.104 0.219 13.516 -3.982 -0.147 0.452 HO4 GL1 26 GL1 HO6 HO6 H 0 1 N Y N 8.952 -0.237 11.908 -0.710 4.407 0.043 HO6 GL1 27 GL1 H1P H1P H 0 1 N N N 4.431 -7.338 9.956 2.979 -2.082 0.278 H1P GL1 28 GL1 H2P H2P H 0 1 N N N 4.536 -7.723 12.496 4.173 0.298 -1.133 H2P GL1 29 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GL1 C1 C2 SING N N 1 GL1 C1 O1 SING N N 2 GL1 C1 O5 SING N N 3 GL1 C1 H1 SING N N 4 GL1 C2 C3 SING N N 5 GL1 C2 O2 SING N N 6 GL1 C2 H2 SING N N 7 GL1 C3 C4 SING N N 8 GL1 C3 O3 SING N N 9 GL1 C3 H3 SING N N 10 GL1 C4 C5 SING N N 11 GL1 C4 O4 SING N N 12 GL1 C4 H4 SING N N 13 GL1 C5 C6 SING N N 14 GL1 C5 O5 SING N N 15 GL1 C5 H5 SING N N 16 GL1 C6 O6 SING N N 17 GL1 C6 H61 SING N N 18 GL1 C6 H62 SING N N 19 GL1 O1 P SING N N 20 GL1 O2 HO2 SING N N 21 GL1 O3 HO3 SING N N 22 GL1 O4 HO4 SING N N 23 GL1 O6 HO6 SING N N 24 GL1 P O1P SING N N 25 GL1 P O2P SING N N 26 GL1 P O3P DOUB N N 27 GL1 O1P H1P SING N N 28 GL1 O2P H2P SING N N 29 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GL1 SMILES ACDLabs 10.04 "O=P(OC1OC(C(O)C(O)C1O)CO)(O)O" GL1 SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H](O[P](O)(O)=O)[C@H](O)[C@@H](O)[C@H]1O" GL1 SMILES CACTVS 3.341 "OC[CH]1O[CH](O[P](O)(O)=O)[CH](O)[CH](O)[CH]1O" GL1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)O)O)O)O)O" GL1 SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(O1)OP(=O)(O)O)O)O)O)O" GL1 InChI InChI 1.03 "InChI=1S/C6H13O9P/c7-1-2-3(8)4(9)5(10)6(14-2)15-16(11,12)13/h2-10H,1H2,(H2,11,12,13)/t2-,3+,4+,5-,6-/m1/s1" GL1 InChIKey InChI 1.03 HXXFSFRBOHSIMQ-FPRJBGLDSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GL1 "SYSTEMATIC NAME" ACDLabs 10.04 1-O-phosphono-alpha-D-galactopyranose GL1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] dihydrogen phosphate" GL1 "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-Galp1PO3 # _pdbx_chem_comp_related.comp_id GL1 _pdbx_chem_comp_related.related_comp_id GLA _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 GL1 C1 GLA C1 "Carbohydrate core" 2 GL1 C2 GLA C2 "Carbohydrate core" 3 GL1 C3 GLA C3 "Carbohydrate core" 4 GL1 C4 GLA C4 "Carbohydrate core" 5 GL1 C5 GLA C5 "Carbohydrate core" 6 GL1 C6 GLA C6 "Carbohydrate core" 7 GL1 O1 GLA O1 "Carbohydrate core" 8 GL1 O2 GLA O2 "Carbohydrate core" 9 GL1 O3 GLA O3 "Carbohydrate core" 10 GL1 O4 GLA O4 "Carbohydrate core" 11 GL1 O5 GLA O5 "Carbohydrate core" 12 GL1 O6 GLA O6 "Carbohydrate core" 13 GL1 H1 GLA H1 "Carbohydrate core" 14 GL1 H2 GLA H2 "Carbohydrate core" 15 GL1 H3 GLA H3 "Carbohydrate core" 16 GL1 H4 GLA H4 "Carbohydrate core" 17 GL1 H5 GLA H5 "Carbohydrate core" 18 GL1 H61 GLA H61 "Carbohydrate core" 19 GL1 H62 GLA H62 "Carbohydrate core" 20 GL1 HO2 GLA HO2 "Carbohydrate core" 21 GL1 HO3 GLA HO3 "Carbohydrate core" 22 GL1 HO4 GLA HO4 "Carbohydrate core" 23 GL1 HO6 GLA HO6 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support GL1 "CARBOHYDRATE ISOMER" D PDB ? GL1 "CARBOHYDRATE RING" pyranose PDB ? GL1 "CARBOHYDRATE ANOMER" alpha PDB ? GL1 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GL1 "Create component" 2005-04-14 RCSB GL1 "Modify descriptor" 2011-06-04 RCSB GL1 "Other modification" 2020-07-03 RCSB GL1 "Modify parent residue" 2020-07-17 RCSB GL1 "Modify synonyms" 2020-07-17 RCSB GL1 "Modify internal type" 2020-07-17 RCSB GL1 "Modify linking type" 2020-07-17 RCSB GL1 "Modify leaving atom flag" 2020-07-17 RCSB ##