data_GLA # _chem_comp.id GLA _chem_comp.name alpha-D-galactopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "alpha-D-galactose; D-galactose; galactose; ALPHA D-GALACTOSE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 180.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GLA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ABP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 GLA alpha-D-galactose PDB ? 2 GLA D-galactose PDB ? 3 GLA galactose PDB ? 4 GLA "ALPHA D-GALACTOSE" PDB ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GLA C1 C1 C 0 1 N N S N N N 14.312 56.846 55.116 1.424 -0.489 -0.382 C1 GLA 1 GLA C2 C2 C 0 1 N N R N N N 12.873 57.140 54.749 0.392 -0.498 -1.512 C2 GLA 2 GLA C3 C3 C 0 1 N N S N N N 12.373 56.256 53.626 -0.650 0.592 -1.244 C3 GLA 3 GLA C4 C4 C 0 1 N N R N N N 13.334 56.364 52.401 -1.222 0.387 0.163 C4 GLA 4 GLA C5 C5 C 0 1 N N R N N N 14.735 56.054 52.846 -0.068 0.330 1.166 C5 GLA 5 GLA C6 C6 C 0 1 N N N N N N 15.685 56.357 51.684 -0.630 0.161 2.579 C6 GLA 6 GLA O1 O1 O 0 1 N Y N N N N 14.401 55.565 55.685 2.043 0.797 -0.316 O1 GLA 7 GLA O2 O2 O 0 1 N N N N N N 12.023 56.989 55.927 1.044 -0.242 -2.757 O2 GLA 8 GLA O3 O3 O 0 1 N N N N N N 11.068 56.630 53.244 -1.700 0.498 -2.209 O3 GLA 9 GLA O4 O4 O 0 1 N N N N N N 13.184 57.694 51.793 -1.958 -0.836 0.206 O4 GLA 10 GLA O5 O5 O 0 1 N N N N N N 15.135 56.882 53.922 0.783 -0.771 0.859 O5 GLA 11 GLA O6 O6 O 0 1 N N N N N N 16.890 55.781 52.074 0.446 0.112 3.517 O6 GLA 12 GLA H1 H1 H 0 1 N N N N N N 14.665 57.611 55.845 2.183 -1.246 -0.578 H1 GLA 13 GLA H2 H2 H 0 1 N N N N N N 12.827 58.192 54.382 -0.097 -1.470 -1.550 H2 GLA 14 GLA H3 H3 H 0 1 N N N N N N 12.349 55.201 53.986 -0.180 1.573 -1.309 H3 GLA 15 GLA H4 H4 H 0 1 N N N N N N 13.079 55.619 51.611 -1.881 1.218 0.414 H4 GLA 16 GLA H5 H5 H 0 1 N N N N N N 14.766 54.985 53.164 0.504 1.256 1.112 H5 GLA 17 GLA H61 H61 H 0 1 N N N N N N 15.315 56.016 50.688 -1.202 -0.764 2.634 H61 GLA 18 GLA H62 H62 H 0 1 N N N N N N 15.757 57.438 51.421 -1.279 1.004 2.815 H62 GLA 19 GLA HO1 HO1 H 0 1 N Y N N N N 15.304 55.380 55.915 2.688 0.760 0.403 HO1 GLA 20 GLA HO2 HO2 H 0 1 N Y N N N N 11.120 57.173 55.696 1.695 -0.947 -2.882 HO2 GLA 21 GLA HO3 HO3 H 0 1 N Y N N N N 10.754 56.075 52.539 -1.293 0.620 -3.078 HO3 GLA 22 GLA HO4 HO4 H 0 1 N Y N N N N 13.769 57.759 51.047 -2.669 -0.758 -0.443 HO4 GLA 23 GLA HO6 HO6 H 0 1 N Y N N N N 17.479 55.969 51.353 0.050 0.005 4.393 HO6 GLA 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLA C1 C2 SING N N 1 GLA C1 O1 SING N N 2 GLA C1 O5 SING N N 3 GLA C1 H1 SING N N 4 GLA C2 C3 SING N N 5 GLA C2 O2 SING N N 6 GLA C2 H2 SING N N 7 GLA C3 C4 SING N N 8 GLA C3 O3 SING N N 9 GLA C3 H3 SING N N 10 GLA C4 C5 SING N N 11 GLA C4 O4 SING N N 12 GLA C4 H4 SING N N 13 GLA C5 C6 SING N N 14 GLA C5 O5 SING N N 15 GLA C5 H5 SING N N 16 GLA C6 O6 SING N N 17 GLA C6 H61 SING N N 18 GLA C6 H62 SING N N 19 GLA O1 HO1 SING N N 20 GLA O2 HO2 SING N N 21 GLA O3 HO3 SING N N 22 GLA O4 HO4 SING N N 23 GLA O6 HO6 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLA SMILES ACDLabs 10.04 "OC1C(O)C(OC(O)C1O)CO" GLA SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@H]1O" GLA SMILES CACTVS 3.341 "OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O" GLA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)O" GLA SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(O1)O)O)O)O)O" GLA InChI InChI 1.03 "InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3+,4+,5-,6+/m1/s1" GLA InChIKey InChI 1.03 WQZGKKKJIJFFOK-PHYPRBDBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLA "SYSTEMATIC NAME" ACDLabs 10.04 alpha-D-galactopyranose GLA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,4S,5R,6R)-6-(hydroxymethyl)oxane-2,3,4,5-tetrol" GLA "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DGalpa GLA "COMMON NAME" GMML 1.0 a-D-galactopyranose GLA "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-Galp GLA "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Gal # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support GLA "CARBOHYDRATE ISOMER" D PDB ? GLA "CARBOHYDRATE RING" pyranose PDB ? GLA "CARBOHYDRATE ANOMER" alpha PDB ? GLA "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GLA "Create component" 1999-07-08 EBI GLA "Modify descriptor" 2011-06-04 RCSB GLA "Other modification" 2019-08-12 RCSB GLA "Other modification" 2019-12-19 RCSB GLA "Other modification" 2020-07-03 RCSB GLA "Modify name" 2020-07-17 RCSB GLA "Modify synonyms" 2020-07-17 RCSB GLA "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id GLA _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type O-Glycosylation _pdbx_chem_comp_pcm.category Carbohydrate _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #