data_GLD # _chem_comp.id GLD _chem_comp.name "4,6-dideoxy-alpha-D-xylo-hexopyranose" _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4,6-DIDEOXYGLUCOSE; 4,6-dideoxy-alpha-D-xylo-hexose; 4,6-dideoxy-D-xylo-hexose; 4,6-dideoxy-xylo-hexose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 148.157 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GLD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 GLD "4,6-DIDEOXYGLUCOSE" PDB ? 2 GLD "4,6-dideoxy-alpha-D-xylo-hexose" PDB ? 3 GLD "4,6-dideoxy-D-xylo-hexose" PDB ? 4 GLD "4,6-dideoxy-xylo-hexose" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GLD C1 C1 C 0 1 N N S 49.643 89.654 46.002 1.333 -0.344 -0.056 C1 GLD 1 GLD C2 C2 C 0 1 N N R 49.960 88.195 45.742 0.253 -0.533 -1.123 C2 GLD 2 GLD C3 C3 C 0 1 N N S 49.046 87.541 44.733 -0.944 0.360 -0.785 C3 GLD 3 GLD C4 C4 C 0 1 N N N 47.599 87.896 45.015 -1.388 0.063 0.651 C4 GLD 4 GLD C5 C5 C 0 1 N N R 47.436 89.403 45.004 -0.183 0.207 1.584 C5 GLD 5 GLD C6 C6 C 0 1 N N N 46.022 89.802 45.302 -0.623 -0.054 3.026 C6 GLD 6 GLD O1 O1 O 0 1 N Y N 50.390 90.488 45.142 1.724 1.029 -0.013 O1 GLD 7 GLD O2 O2 O 0 1 N N N 51.317 88.075 45.340 0.775 -0.170 -2.403 O2 GLD 8 GLD O3 O3 O 0 1 N N N 49.146 86.117 44.804 -2.020 0.087 -1.685 O3 GLD 9 GLD O5 O5 O 0 1 N N N 48.258 89.985 46.019 0.824 -0.732 1.218 O5 GLD 10 GLD H1 H1 H 0 1 N N N 49.963 89.844 47.052 2.199 -0.959 -0.303 H1 GLD 11 GLD H2 H2 H 0 1 N N N 49.786 87.648 46.698 -0.063 -1.576 -1.141 H2 GLD 12 GLD H3 H3 H 0 1 N N N 49.356 87.907 43.726 -0.654 1.408 -0.869 H3 GLD 13 GLD H4 H41 H 0 1 N N N 46.896 87.391 44.311 -1.776 -0.953 0.710 H4 GLD 14 GLD H42 H42 H 0 1 N N N 47.230 87.439 45.963 -2.164 0.769 0.946 H42 GLD 15 GLD H5 H5 H 0 1 N N N 47.725 89.759 43.987 0.217 1.217 1.506 H5 GLD 16 GLD H61 H61 H 0 1 N N N 45.902 90.910 45.293 0.233 0.050 3.692 H61 GLD 17 GLD H62 H62 H 0 1 N N N 45.303 89.308 44.607 -1.392 0.665 3.308 H62 GLD 18 GLD H63 H63 H 0 1 N N N 45.666 89.359 46.261 -1.024 -1.064 3.106 H63 GLD 19 GLD HO1 HO1 H 0 1 N Y N 50.191 91.402 45.305 2.404 1.105 0.670 HO1 GLD 20 GLD HO2 HO2 H 0 1 N Y N 51.515 87.160 45.177 1.525 -0.755 -2.576 HO2 GLD 21 GLD HO3 HO3 H 0 1 N Y N 48.571 85.705 44.169 -1.698 0.287 -2.575 HO3 GLD 22 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLD C1 C2 SING N N 1 GLD C1 O1 SING N N 2 GLD C1 O5 SING N N 3 GLD C1 H1 SING N N 4 GLD C2 C3 SING N N 5 GLD C2 O2 SING N N 6 GLD C2 H2 SING N N 7 GLD C3 C4 SING N N 8 GLD C3 O3 SING N N 9 GLD C3 H3 SING N N 10 GLD C4 C5 SING N N 11 GLD C4 H4 SING N N 12 GLD C4 H42 SING N N 13 GLD C5 C6 SING N N 14 GLD C5 O5 SING N N 15 GLD C5 H5 SING N N 16 GLD C6 H61 SING N N 17 GLD C6 H62 SING N N 18 GLD C6 H63 SING N N 19 GLD O1 HO1 SING N N 20 GLD O2 HO2 SING N N 21 GLD O3 HO3 SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLD SMILES ACDLabs 10.04 "OC1CC(OC(O)C1O)C" GLD SMILES_CANONICAL CACTVS 3.341 "C[C@@H]1C[C@H](O)[C@@H](O)[C@@H](O)O1" GLD SMILES CACTVS 3.341 "C[CH]1C[CH](O)[CH](O)[CH](O)O1" GLD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H]1C[C@@H]([C@H]([C@H](O1)O)O)O" GLD SMILES "OpenEye OEToolkits" 1.5.0 "CC1CC(C(C(O1)O)O)O" GLD InChI InChI 1.03 "InChI=1S/C6H12O4/c1-3-2-4(7)5(8)6(9)10-3/h3-9H,2H2,1H3/t3-,4+,5-,6+/m1/s1" GLD InChIKey InChI 1.03 BJBURJZEESAQPG-MOJAZDJTSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLD "SYSTEMATIC NAME" ACDLabs 10.04 "4,6-dideoxy-alpha-D-xylo-hexopyranose" GLD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,4S,6R)-6-methyloxane-2,3,4-triol" GLD "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 "a-D-4,6-deoxy-Glcp" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support GLD "CARBOHYDRATE ISOMER" D PDB ? GLD "CARBOHYDRATE RING" pyranose PDB ? GLD "CARBOHYDRATE ANOMER" alpha PDB ? GLD "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GLD "Create component" 1999-07-08 EBI GLD "Modify descriptor" 2011-06-04 RCSB GLD "Other modification" 2020-07-03 RCSB GLD "Modify name" 2020-07-17 RCSB GLD "Modify synonyms" 2020-07-17 RCSB GLD "Modify linking type" 2020-07-17 RCSB GLD "Modify atom id" 2020-07-17 RCSB GLD "Modify component atom id" 2020-07-17 RCSB GLD "Modify leaving atom flag" 2020-07-17 RCSB ##