data_GLP # _chem_comp.id GLP _chem_comp.name 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H14 N O8 P" _chem_comp.mon_nstd_parent_comp_id PA1 _chem_comp.pdbx_synonyms ;GLUCOSAMINE 6-PHOSPHATE; 6-O-phosphono-alpha-D-glucosamine; 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucose; 2-amino-2-deoxy-6-O-phosphono-D-glucose; 2-amino-2-deoxy-6-O-phosphono-glucose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 259.151 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GLP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1MOQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 GLP "GLUCOSAMINE 6-PHOSPHATE" PDB ? 2 GLP 6-O-phosphono-alpha-D-glucosamine PDB ? 3 GLP 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucose PDB ? 4 GLP 2-amino-2-deoxy-6-O-phosphono-D-glucose PDB ? 5 GLP 2-amino-2-deoxy-6-O-phosphono-glucose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GLP C1 C1 C 0 1 N N S 28.601 16.111 -4.414 1.596 0.171 2.086 C1 GLP 1 GLP C2 C2 C 0 1 N N R 28.891 15.432 -3.091 0.588 0.557 3.171 C2 GLP 2 GLP C3 C3 C 0 1 N N R 28.469 16.331 -1.941 -0.743 -0.147 2.892 C3 GLP 3 GLP C4 C4 C 0 1 N N S 29.146 17.683 -2.019 -1.174 0.169 1.455 C4 GLP 4 GLP C5 C5 C 0 1 N N R 28.852 18.308 -3.399 -0.033 -0.187 0.500 C5 GLP 5 GLP C6 C6 C 0 1 N N N 29.779 19.521 -3.592 -0.468 0.097 -0.938 C6 GLP 6 GLP O1 O1 O 0 1 N Y N 27.210 16.267 -4.555 1.768 -1.247 2.081 O1 GLP 7 GLP N2 N2 N 0 1 N N N 28.212 14.167 -3.035 1.097 0.143 4.485 N2 GLP 8 GLP O3 O3 O 0 1 N N N 28.873 15.709 -0.704 -1.740 0.317 3.805 O3 GLP 9 GLP O4 O4 O 0 1 N N N 28.690 18.599 -1.045 -2.334 -0.595 1.121 O4 GLP 10 GLP O5 O5 O 0 1 N N N 29.146 17.392 -4.435 1.118 0.594 0.810 O5 GLP 11 GLP O6 O6 O 0 1 N N N 31.138 19.041 -3.744 0.593 -0.242 -1.833 O6 GLP 12 GLP P P P 0 1 N N N 32.401 19.889 -3.182 0.069 0.080 -3.320 P GLP 13 GLP O1P O1P O 0 1 N N N 32.431 21.182 -3.906 -0.265 1.518 -3.424 O1P GLP 14 GLP O2P O2P O 0 1 N N N 33.552 19.003 -3.386 1.221 -0.280 -4.385 O2P GLP 15 GLP O3P O3P O 0 1 N N N 32.152 20.228 -1.726 -1.242 -0.800 -3.630 O3P GLP 16 GLP H1 H1 H 0 1 N N N 29.036 15.485 -5.227 2.552 0.651 2.293 H1 GLP 17 GLP H2 H2 H 0 1 N N N 29.986 15.246 -3.000 0.438 1.637 3.162 H2 GLP 18 GLP H3 H3 H 0 1 N N N 27.364 16.473 -1.995 -0.616 -1.224 3.006 H3 GLP 19 GLP H4 H4 H 0 1 N N N 30.232 17.501 -1.845 -1.402 1.232 1.370 H4 GLP 20 GLP H5 H5 H 0 1 N N N 27.774 18.592 -3.437 0.207 -1.245 0.603 H5 GLP 21 GLP H61 H61 H 0 1 N N N 29.458 20.174 -4.436 -1.348 -0.499 -1.176 H61 GLP 22 GLP H62 H62 H 0 1 N N N 29.679 20.270 -2.772 -0.707 1.155 -1.043 H62 GLP 23 GLP HO1 HO1 H 0 1 N Y N 27.028 16.692 -5.384 2.409 -1.448 1.386 HO1 GLP 24 GLP HN21 HN21 H 0 0 N N N 28.407 13.709 -2.144 1.972 0.627 4.623 HN21 GLP 25 GLP HN22 HN22 H 0 0 N Y N 28.443 13.571 -3.830 0.454 0.505 5.173 HN22 GLP 26 GLP HO3 HO3 H 0 1 N Y N 28.609 16.271 0.015 -1.428 0.097 4.694 HO3 GLP 27 GLP HO4 HO4 H 0 1 N Y N 29.114 19.447 -1.093 -3.027 -0.340 1.746 HO4 GLP 28 GLP HOP2 HOP2 H 0 0 N N N 34.291 19.499 -3.056 0.868 -0.072 -5.261 HOP2 GLP 29 GLP HOP3 HOP3 H 0 0 N N N 32.891 20.724 -1.396 -0.981 -1.727 -3.552 HOP3 GLP 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLP C1 C2 SING N N 1 GLP C1 O1 SING N N 2 GLP C1 O5 SING N N 3 GLP C1 H1 SING N N 4 GLP C2 C3 SING N N 5 GLP C2 N2 SING N N 6 GLP C2 H2 SING N N 7 GLP C3 C4 SING N N 8 GLP C3 O3 SING N N 9 GLP C3 H3 SING N N 10 GLP C4 C5 SING N N 11 GLP C4 O4 SING N N 12 GLP C4 H4 SING N N 13 GLP C5 C6 SING N N 14 GLP C5 O5 SING N N 15 GLP C5 H5 SING N N 16 GLP C6 O6 SING N N 17 GLP C6 H61 SING N N 18 GLP C6 H62 SING N N 19 GLP O1 HO1 SING N N 20 GLP N2 HN21 SING N N 21 GLP N2 HN22 SING N N 22 GLP O3 HO3 SING N N 23 GLP O4 HO4 SING N N 24 GLP O6 P SING N N 25 GLP P O1P DOUB N N 26 GLP P O2P SING N N 27 GLP P O3P SING N N 28 GLP O2P HOP2 SING N N 29 GLP O3P HOP3 SING N N 30 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GLP SMILES ACDLabs 10.04 "O=P(O)(O)OCC1OC(O)C(N)C(O)C1O" GLP SMILES_CANONICAL CACTVS 3.341 "N[C@H]1[C@@H](O)O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]1O" GLP SMILES CACTVS 3.341 "N[CH]1[CH](O)O[CH](CO[P](O)(O)=O)[CH](O)[CH]1O" GLP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)N)O)O)OP(=O)(O)O" GLP SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(O1)O)N)O)O)OP(=O)(O)O" GLP InChI InChI 1.03 "InChI=1S/C6H14NO8P/c7-3-5(9)4(8)2(15-6(3)10)1-14-16(11,12)13/h2-6,8-10H,1,7H2,(H2,11,12,13)/t2-,3-,4-,5-,6+/m1/s1" GLP InChIKey InChI 1.03 XHMJOUIAFHJHBW-UKFBFLRUSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLP "SYSTEMATIC NAME" ACDLabs 10.04 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose GLP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R,6S)-5-amino-3,4,6-trihydroxy-oxan-2-yl]methyl dihydrogen phosphate" GLP "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-GlcpN6PO3 # _pdbx_chem_comp_related.comp_id GLP _pdbx_chem_comp_related.related_comp_id PA1 _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 GLP C1 PA1 C1 "Carbohydrate core" 2 GLP C2 PA1 C2 "Carbohydrate core" 3 GLP C3 PA1 C3 "Carbohydrate core" 4 GLP C4 PA1 C4 "Carbohydrate core" 5 GLP C5 PA1 C5 "Carbohydrate core" 6 GLP C6 PA1 C6 "Carbohydrate core" 7 GLP N2 PA1 N2 "Carbohydrate core" 8 GLP O1 PA1 O1 "Carbohydrate core" 9 GLP O3 PA1 O3 "Carbohydrate core" 10 GLP O4 PA1 O4 "Carbohydrate core" 11 GLP O5 PA1 O5 "Carbohydrate core" 12 GLP O6 PA1 O6 "Carbohydrate core" 13 GLP H1 PA1 H1 "Carbohydrate core" 14 GLP H2 PA1 H2 "Carbohydrate core" 15 GLP H3 PA1 H3 "Carbohydrate core" 16 GLP H4 PA1 H4 "Carbohydrate core" 17 GLP H5 PA1 H5 "Carbohydrate core" 18 GLP H61 PA1 H61 "Carbohydrate core" 19 GLP H62 PA1 H62 "Carbohydrate core" 20 GLP HN21 PA1 HN21 "Carbohydrate core" 21 GLP HN22 PA1 HN22 "Carbohydrate core" 22 GLP HO1 PA1 HO1 "Carbohydrate core" 23 GLP HO3 PA1 HO3 "Carbohydrate core" 24 GLP HO4 PA1 HO4 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support GLP "CARBOHYDRATE ISOMER" D PDB ? GLP "CARBOHYDRATE RING" pyranose PDB ? GLP "CARBOHYDRATE ANOMER" alpha PDB ? GLP "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GLP "Create component" 1999-07-08 EBI GLP "Modify descriptor" 2011-06-04 RCSB GLP "Other modification" 2020-07-03 RCSB GLP "Modify parent residue" 2020-07-17 RCSB GLP "Modify name" 2020-07-17 RCSB GLP "Modify synonyms" 2020-07-17 RCSB GLP "Modify linking type" 2020-07-17 RCSB GLP "Modify leaving atom flag" 2020-07-17 RCSB ##