data_GMH # _chem_comp.id GMH _chem_comp.name L-glycero-alpha-D-manno-heptopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H14 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "L-glycero-alpha-D-manno-heptose; L-glycero-D-manno-heptose; L-glycero-manno-heptose; L-GLYCERO-D-MANNO-HEPTOPYRANOSE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 210.182 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GMH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1FCP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 GMH L-glycero-alpha-D-manno-heptose PDB ? 2 GMH L-glycero-D-manno-heptose PDB ? 3 GMH L-glycero-manno-heptose PDB ? 4 GMH L-GLYCERO-D-MANNO-HEPTOPYRANOSE PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GMH C1 C1 C 0 1 N N S 58.655 63.418 56.490 1.729 0.015 -0.981 C1 GMH 1 GMH C2 C2 C 0 1 N N S 58.563 61.916 56.144 0.783 -0.269 -2.149 C2 GMH 2 GMH C3 C3 C 0 1 N N S 57.506 61.262 57.057 -0.529 0.488 -1.925 C3 GMH 3 GMH C4 C4 C 0 1 N N S 57.865 61.475 58.536 -1.075 0.123 -0.540 C4 GMH 4 GMH C5 C5 C 0 1 N N R 57.963 62.990 58.762 0.010 0.379 0.506 C5 GMH 5 GMH C6 C6 C 0 1 N N S 58.260 63.363 60.213 -0.535 0.051 1.897 C6 GMH 6 GMH C7 C7 C 0 1 N N N 57.972 64.840 60.433 0.548 0.311 2.945 C7 GMH 7 GMH O1 O1 O 0 1 N Y N 57.460 64.078 56.108 1.965 1.422 -0.895 O1 GMH 8 GMH O2 O2 O 0 1 N N N 59.830 61.323 56.367 0.521 -1.672 -2.221 O2 GMH 9 GMH O3 O3 O 0 1 N N N 57.238 59.854 56.792 -1.475 0.116 -2.930 O3 GMH 10 GMH O4 O4 O 0 1 N N N 56.828 60.923 59.379 -2.219 0.928 -0.249 O4 GMH 11 GMH O5 O5 O 0 1 N N N 58.957 63.559 57.880 1.144 -0.442 0.236 O5 GMH 12 GMH O6 O6 O 0 1 N N N 59.614 63.083 60.526 -0.924 -1.322 1.944 O6 GMH 13 GMH O7 O7 O 0 1 N N N 58.389 65.218 61.734 0.037 0.004 4.244 O7 GMH 14 GMH H1 H1 H 0 1 N N N 59.479 63.905 55.918 2.675 -0.501 -1.145 H1 GMH 15 GMH H2 H2 H 0 1 N N N 58.268 61.773 55.078 1.243 0.063 -3.080 H2 GMH 16 GMH H3 H3 H 0 1 N N N 56.552 61.785 56.812 -0.345 1.561 -1.976 H3 GMH 17 GMH H4 H4 H 0 1 N N N 58.826 60.969 58.787 -1.356 -0.929 -0.525 H4 GMH 18 GMH H5 H5 H 0 1 N N N 56.960 63.417 58.526 0.307 1.428 0.471 H5 GMH 19 GMH H6 H6 H 0 1 N N N 57.605 62.756 60.882 -1.400 0.681 2.105 H6 GMH 20 GMH H71 H71 H 0 1 N N N 58.429 65.479 59.642 0.844 1.359 2.909 H71 GMH 21 GMH H72 H72 H 0 1 N N N 56.902 65.092 60.244 1.413 -0.318 2.737 H72 GMH 22 GMH HO1 HO1 H 0 1 N Y N 57.516 65.002 56.320 2.568 1.559 -0.151 HO1 GMH 23 GMH HO2 HO2 H 0 1 N Y N 59.773 60.398 56.154 1.373 -2.109 -2.355 HO2 GMH 24 GMH HO3 HO3 H 0 1 N Y N 56.586 59.451 57.354 -1.085 0.352 -3.782 HO3 GMH 25 GMH HO4 HO4 H 0 1 N Y N 57.049 61.054 60.293 -2.874 0.741 -0.936 HO4 GMH 26 GMH HO6 HO6 H 0 1 N Y N 59.798 63.315 61.428 -0.132 -1.843 1.755 HO6 GMH 27 GMH HO7 HO7 H 0 1 N Y N 58.209 66.140 61.871 0.750 0.181 4.874 HO7 GMH 28 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GMH C1 C2 SING N N 1 GMH C1 O1 SING N N 2 GMH C1 O5 SING N N 3 GMH C1 H1 SING N N 4 GMH C2 C3 SING N N 5 GMH C2 O2 SING N N 6 GMH C2 H2 SING N N 7 GMH C3 C4 SING N N 8 GMH C3 O3 SING N N 9 GMH C3 H3 SING N N 10 GMH C4 C5 SING N N 11 GMH C4 O4 SING N N 12 GMH C4 H4 SING N N 13 GMH C5 C6 SING N N 14 GMH C5 O5 SING N N 15 GMH C5 H5 SING N N 16 GMH C6 C7 SING N N 17 GMH C6 O6 SING N N 18 GMH C6 H6 SING N N 19 GMH C7 O7 SING N N 20 GMH C7 H71 SING N N 21 GMH C7 H72 SING N N 22 GMH O1 HO1 SING N N 23 GMH O2 HO2 SING N N 24 GMH O3 HO3 SING N N 25 GMH O4 HO4 SING N N 26 GMH O6 HO6 SING N N 27 GMH O7 HO7 SING N N 28 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GMH SMILES ACDLabs 10.04 "OC1C(O)C(OC(O)C1O)C(O)CO" GMH SMILES_CANONICAL CACTVS 3.341 "OC[C@H](O)[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O" GMH SMILES CACTVS 3.341 "OC[CH](O)[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O" GMH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O)O)O" GMH SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C1C(C(C(C(O1)O)O)O)O)O)O" GMH InChI InChI 1.03 "InChI=1S/C7H14O7/c8-1-2(9)6-4(11)3(10)5(12)7(13)14-6/h2-13H,1H2/t2-,3-,4-,5-,6+,7-/m0/s1" GMH InChIKey InChI 1.03 BGWQRWREUZVRGI-QQABCQGCSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GMH "SYSTEMATIC NAME" ACDLabs 10.04 L-glycero-alpha-D-manno-heptopyranose GMH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3S,4S,5S,6R)-6-[(1S)-1,2-dihydroxyethyl]oxane-2,3,4,5-tetrol" GMH "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 LDmanHep GMH "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 L-gro-a-D-manHepp # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support GMH "CARBOHYDRATE ISOMER" D PDB ? GMH "CARBOHYDRATE RING" pyranose PDB ? GMH "CARBOHYDRATE ANOMER" alpha PDB ? GMH "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GMH "Create component" 1999-07-08 EBI GMH "Modify descriptor" 2011-06-04 RCSB GMH "Other modification" 2019-08-12 RCSB GMH "Other modification" 2019-12-19 RCSB GMH "Other modification" 2020-07-03 RCSB GMH "Modify name" 2020-07-17 RCSB GMH "Modify synonyms" 2020-07-17 RCSB GMH "Modify linking type" 2020-07-17 RCSB ##