data_GN3 # _chem_comp.id GN3 _chem_comp.name "[[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-oxidanyl-2-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H18 N6 O16 P4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-06-24 _chem_comp.pdbx_modified_date 2020-07-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 602.176 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GN3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6S2U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GN3 O15 O1 O 0 1 N N N 79.349 -61.410 101.022 -7.328 -2.824 1.652 O15 GN3 1 GN3 C9 C1 C 0 1 N N N 80.107 -61.435 101.990 -6.741 -2.138 0.832 C9 GN3 2 GN3 N5 N1 N 0 1 N N N 81.325 -62.086 101.913 -7.407 -1.557 -0.190 N5 GN3 3 GN3 C C2 C 0 1 N N N 82.236 -62.171 102.935 -6.740 -0.793 -1.100 C GN3 4 GN3 N N2 N 0 1 N N N 83.363 -62.841 102.684 -7.442 -0.215 -2.127 N GN3 5 GN3 C2 C3 C 0 1 Y N N 79.890 -60.839 103.287 -5.345 -1.928 0.931 C2 GN3 6 GN3 N2 N3 N 0 1 Y N N 78.826 -60.108 103.788 -4.388 -2.337 1.798 N2 GN3 7 GN3 C3 C4 C 0 1 Y N N 79.177 -59.827 105.023 -3.238 -1.853 1.430 C3 GN3 8 GN3 N3 N4 N 0 1 Y N N 80.407 -60.329 105.364 -3.392 -1.102 0.301 N3 GN3 9 GN3 C1 C5 C 0 1 Y N N 80.871 -60.983 104.247 -4.718 -1.133 -0.035 C1 GN3 10 GN3 N1 N5 N 0 1 N N N 82.050 -61.627 104.138 -5.443 -0.594 -1.023 N1 GN3 11 GN3 C4 C6 C 0 1 N N R 81.093 -60.200 106.658 -2.332 -0.391 -0.418 C4 GN3 12 GN3 C8 C7 C 0 1 N N R 82.564 -59.799 106.529 -2.209 1.059 0.101 C8 GN3 13 GN3 O14 O2 O 0 1 N N N 83.297 -60.208 107.678 -2.902 1.961 -0.764 O14 GN3 14 GN3 C7 C8 C 0 1 N N S 82.430 -58.281 106.483 -0.690 1.341 0.072 C7 GN3 15 GN3 O8 O3 O 0 1 N N N 83.576 -57.582 107.016 -0.399 2.425 -0.812 O8 GN3 16 GN3 P2 P1 P 0 1 N N N 84.774 -56.778 106.405 0.345 3.771 -0.333 P2 GN3 17 GN3 O10 O4 O 0 1 N N N 84.686 -56.520 104.976 -0.245 4.233 0.943 O10 GN3 18 GN3 N4 N6 N 0 1 N N N 84.842 -55.397 107.268 1.984 3.458 -0.113 N4 GN3 19 GN3 P3 P2 P 0 1 N N N 84.536 -53.818 107.005 2.800 4.842 0.388 P3 GN3 20 GN3 O13 O5 O 0 1 N N N 83.459 -53.443 106.102 2.651 5.901 -0.636 O13 GN3 21 GN3 O12 O6 O 0 1 N N N 85.888 -53.191 106.451 2.180 5.355 1.783 O12 GN3 22 GN3 O11 O7 O 0 1 N N N 84.335 -53.039 108.363 4.361 4.503 0.586 O11 GN3 23 GN3 O9 O8 O 0 1 N N N 86.075 -57.637 106.666 0.161 4.913 -1.453 O9 GN3 24 GN3 C5 C9 C 0 1 N N R 81.306 -58.012 107.481 -0.075 0.028 -0.461 C5 GN3 25 GN3 O O9 O 0 1 N N N 80.455 -59.178 107.403 -1.048 -0.991 -0.143 O GN3 26 GN3 C6 C10 C 0 1 N N N 80.492 -56.774 107.204 1.253 -0.262 0.242 C6 GN3 27 GN3 O1 O10 O 0 1 N N N 79.367 -56.740 108.108 1.861 -1.414 -0.346 O1 GN3 28 GN3 P P3 P 0 1 N N N 79.346 -56.753 109.689 3.274 -2.007 0.148 P GN3 29 GN3 O3 O11 O 0 1 N N N 78.100 -57.359 110.204 4.439 -0.937 -0.149 O3 GN3 30 GN3 O2 O12 O 0 1 N N N 80.630 -57.443 110.140 3.214 -2.281 1.601 O2 GN3 31 GN3 O4 O13 O 0 1 N N N 79.466 -55.224 110.115 3.587 -3.375 -0.643 O4 GN3 32 GN3 P1 P4 P 0 1 N N N 80.382 -54.462 111.174 4.558 -4.629 -0.366 P1 GN3 33 GN3 O7 O14 O 0 1 N N N 80.544 -53.030 110.791 4.438 -5.043 1.049 O7 GN3 34 GN3 O6 O15 O 0 1 N N N 81.709 -55.226 111.209 4.136 -5.855 -1.321 O6 GN3 35 GN3 O5 O16 O 0 1 N N N 79.698 -54.643 112.532 6.081 -4.208 -0.675 O5 GN3 36 GN3 H1 H1 H 0 1 N N N 81.559 -62.528 101.047 -8.365 -1.684 -0.276 H1 GN3 37 GN3 H2 H2 H 0 1 N N N 84.060 -62.932 103.396 -8.400 -0.352 -2.198 H2 GN3 38 GN3 H3 H3 H 0 1 N N N 83.510 -63.252 101.784 -6.982 0.332 -2.783 H3 GN3 39 GN3 H4 H4 H 0 1 N N N 78.559 -59.258 105.701 -2.301 -2.020 1.942 H4 GN3 40 GN3 H5 H5 H 0 1 N N N 81.036 -61.156 107.199 -2.532 -0.396 -1.489 H5 GN3 41 GN3 H6 H6 H 0 1 N N N 82.995 -60.185 105.594 -2.594 1.135 1.118 H6 GN3 42 GN3 H7 H7 H 0 1 N N N 83.369 -61.155 107.688 -3.852 1.791 -0.830 H7 GN3 43 GN3 H8 H8 H 0 1 N N N 82.158 -57.935 105.475 -0.323 1.558 1.075 H8 GN3 44 GN3 H9 H9 H 0 1 N N N 84.248 -55.602 108.046 2.123 2.701 0.538 H9 GN3 45 GN3 H10 H10 H 0 1 N N N 85.710 -52.707 105.653 2.243 4.710 2.501 H10 GN3 46 GN3 H11 H11 H 0 1 N N N 83.559 -52.494 108.304 4.894 5.256 0.876 H11 GN3 47 GN3 H12 H12 H 0 1 N N N 86.518 -57.800 105.842 0.525 4.677 -2.318 H12 GN3 48 GN3 H13 H13 H 0 1 N N N 81.741 -57.935 108.489 0.072 0.088 -1.539 H13 GN3 49 GN3 H14 H14 H 0 1 N N N 81.115 -55.881 107.357 1.917 0.595 0.131 H14 GN3 50 GN3 H15 H15 H 0 1 N N N 80.130 -56.795 106.165 1.071 -0.447 1.300 H15 GN3 51 GN3 H16 H16 H 0 1 N N N 78.313 -58.106 110.751 4.535 -0.710 -1.085 H16 GN3 52 GN3 H17 H17 H 0 1 N N N 82.419 -54.640 110.975 4.680 -6.646 -1.209 H17 GN3 53 GN3 H18 H18 H 0 1 N N N 79.493 -53.791 112.900 6.233 -3.924 -1.587 H18 GN3 54 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GN3 O15 C9 DOUB N N 1 GN3 N5 C9 SING N N 2 GN3 N5 C SING N N 3 GN3 C9 C2 SING N N 4 GN3 N C SING N N 5 GN3 C N1 DOUB N N 6 GN3 C2 N2 SING Y N 7 GN3 C2 C1 DOUB Y N 8 GN3 N2 C3 DOUB Y N 9 GN3 N1 C1 SING N N 10 GN3 C1 N3 SING Y N 11 GN3 O10 P2 DOUB N N 12 GN3 C3 N3 SING Y N 13 GN3 N3 C4 SING N N 14 GN3 O13 P3 DOUB N N 15 GN3 P2 O9 SING N N 16 GN3 P2 O8 SING N N 17 GN3 P2 N4 SING N N 18 GN3 O12 P3 SING N N 19 GN3 C7 C8 SING N N 20 GN3 C7 O8 SING N N 21 GN3 C7 C5 SING N N 22 GN3 C8 C4 SING N N 23 GN3 C8 O14 SING N N 24 GN3 C4 O SING N N 25 GN3 P3 N4 SING N N 26 GN3 P3 O11 SING N N 27 GN3 C6 C5 SING N N 28 GN3 C6 O1 SING N N 29 GN3 O C5 SING N N 30 GN3 O1 P SING N N 31 GN3 P O4 SING N N 32 GN3 P O2 DOUB N N 33 GN3 P O3 SING N N 34 GN3 O4 P1 SING N N 35 GN3 O7 P1 DOUB N N 36 GN3 P1 O6 SING N N 37 GN3 P1 O5 SING N N 38 GN3 N5 H1 SING N N 39 GN3 N H2 SING N N 40 GN3 N H3 SING N N 41 GN3 C3 H4 SING N N 42 GN3 C4 H5 SING N N 43 GN3 C8 H6 SING N N 44 GN3 O14 H7 SING N N 45 GN3 C7 H8 SING N N 46 GN3 N4 H9 SING N N 47 GN3 O12 H10 SING N N 48 GN3 O11 H11 SING N N 49 GN3 O9 H12 SING N N 50 GN3 C5 H13 SING N N 51 GN3 C6 H14 SING N N 52 GN3 C6 H15 SING N N 53 GN3 O3 H16 SING N N 54 GN3 O6 H17 SING N N 55 GN3 O5 H18 SING N N 56 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GN3 InChI InChI 1.03 "InChI=1S/C10H18N6O16P4/c11-10-13-7-4(8(18)14-10)12-2-16(7)9-5(17)6(31-34(22,23)15-33(19,20)21)3(30-9)1-29-36(27,28)32-35(24,25)26/h2-3,5-6,9,17H,1H2,(H,27,28)(H2,24,25,26)(H3,11,13,14,18)(H4,15,19,20,21,22,23)/t3-,5-,6-,9-/m1/s1" GN3 InChIKey InChI 1.03 XBDJLYDZMOIGRH-UUOKFMHZSA-N GN3 SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(O)=O)[C@@H](O[P](O)(=O)N[P](O)(O)=O)[C@H]3O" GN3 SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O[P](O)(=O)N[P](O)(O)=O)[CH]3O" GN3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)O)OP(=O)(NP(=O)(O)O)O)O)N=C(NC2=O)N" GN3 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)OP(=O)(NP(=O)(O)O)O)O)N=C(NC2=O)N" # _pdbx_chem_comp_identifier.comp_id GN3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-oxidanyl-2-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GN3 "Create component" 2019-06-24 EBI GN3 "Initial release" 2020-07-08 RCSB ##