data_GN7 # _chem_comp.id GN7 _chem_comp.name "N7-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 347.221 _chem_comp.one_letter_code G _chem_comp.three_letter_code GN7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1GN7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GN7 P P P 0 1 N N N 9.121 -5.982 4.294 0.855 -0.241 -4.909 P GN7 1 GN7 OP1 O1P O 0 1 N N N 10.058 -5.162 3.491 1.719 0.926 -4.625 OP1 GN7 2 GN7 OP2 O2P O 0 1 N N N 9.394 -7.423 4.486 1.732 -1.401 -5.600 OP2 GN7 3 GN7 OP3 O3P O 0 1 N Y N 8.968 -5.296 5.779 -0.330 0.199 -5.905 OP3 GN7 4 GN7 "O5'" O5* O 0 1 N N N 7.643 -5.838 3.636 0.225 -0.791 -3.534 "O5'" GN7 5 GN7 "C5'" C5* C 0 1 N N N 7.206 -6.510 2.437 -0.536 0.279 -2.972 "C5'" GN7 6 GN7 "C4'" C4* C 0 1 N N R 5.823 -7.158 2.645 -1.166 -0.179 -1.655 "C4'" GN7 7 GN7 "O4'" O4* O 0 1 N N N 4.823 -6.186 3.001 -0.146 -0.445 -0.664 "O4'" GN7 8 GN7 "C3'" C3* C 0 1 N N S 5.227 -7.879 1.434 -2.000 0.962 -1.021 "C3'" GN7 9 GN7 "O3'" O3* O 0 1 N N N 4.245 -8.800 1.957 -3.330 0.972 -1.543 "O3'" GN7 10 GN7 "C2'" C2* C 0 1 N N N 4.571 -6.691 0.743 -1.997 0.573 0.476 "C2'" GN7 11 GN7 "C1'" C1* C 0 1 N N R 3.900 -5.982 1.909 -0.783 -0.364 0.621 "C1'" GN7 12 GN7 N9 N9 N 0 1 Y N N 4.182 -2.319 1.769 1.800 1.306 2.471 N9 GN7 13 GN7 C8 C8 C 0 1 Y N N 4.626 -3.534 1.865 1.174 1.026 1.360 C8 GN7 14 GN7 N7 N7 N 0 1 Y N N 3.696 -4.526 1.777 0.152 0.181 1.607 N7 GN7 15 GN7 C5 C5 C 0 1 Y N N 2.509 -3.848 1.598 0.154 -0.072 2.965 C5 GN7 16 GN7 C6 C6 C 0 1 N N N 1.161 -4.298 1.435 -0.635 -0.852 3.826 C6 GN7 17 GN7 O6 O6 O 0 1 N N N 0.738 -5.451 1.407 -1.572 -1.503 3.396 O6 GN7 18 GN7 N1 N1 N 0 1 N N N 0.290 -3.221 1.289 -0.328 -0.866 5.143 N1 GN7 19 GN7 C2 C2 C 0 1 N N N 0.692 -1.904 1.302 0.718 -0.130 5.613 C2 GN7 20 GN7 N2 N2 N 0 1 N N N -0.268 -1.022 1.139 1.003 -0.160 6.956 N2 GN7 21 GN7 N3 N3 N 0 1 N N N 1.947 -1.483 1.453 1.464 0.601 4.820 N3 GN7 22 GN7 C4 C4 C 0 1 Y N N 2.811 -2.506 1.596 1.220 0.660 3.497 C4 GN7 23 GN7 HOP2 2HOP H 0 0 N N N 8.793 -7.948 5.000 2.090 -1.032 -6.418 HOP2 GN7 24 GN7 HOP3 3HOP H 0 0 N N N 8.367 -5.821 6.293 -0.868 -0.588 -6.064 HOP3 GN7 25 GN7 "H5'" 1H5* H 0 1 N N N 7.923 -7.277 2.144 -1.323 0.569 -3.668 "H5'" GN7 26 GN7 "H5''" 2H5* H 0 0 N N N 7.136 -5.781 1.630 0.116 1.131 -2.785 "H5''" GN7 27 GN7 "H4'" H4* H 0 1 N N N 5.920 -7.870 3.465 -1.783 -1.063 -1.813 "H4'" GN7 28 GN7 "H3'" H3* H 0 1 N N N 5.995 -8.383 0.847 -1.517 1.927 -1.174 "H3'" GN7 29 GN7 "HO3'" *HO3 H 0 0 N Y N 3.875 -9.247 1.205 -3.821 1.641 -1.045 "HO3'" GN7 30 GN7 "H2'" 1H2* H 0 1 N N N 5.355 -6.058 0.326 -2.917 0.049 0.736 "H2'" GN7 31 GN7 "H2''" 2H2* H 0 0 N N N 3.864 -6.962 -0.041 -1.872 1.458 1.100 "H2''" GN7 32 GN7 "H1'" H1* H 0 1 N N N 2.952 -6.476 2.123 -1.115 -1.354 0.933 "H1'" GN7 33 GN7 H8 H8 H 0 1 N N N 5.684 -3.752 2.009 1.436 1.414 0.387 H8 GN7 34 GN7 HN1 HN1 H 0 1 N N N -0.703 -3.401 1.158 -0.860 -1.397 5.757 HN1 GN7 35 GN7 HN21 1HN2 H 0 0 N N N -1.205 -1.380 1.034 1.747 0.355 7.305 HN21 GN7 36 GN7 HN22 2HN2 H 0 0 N N N -0.081 -0.031 1.113 0.458 -0.693 7.556 HN22 GN7 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GN7 P OP1 DOUB N N 1 GN7 P OP2 SING N N 2 GN7 P OP3 SING N N 3 GN7 P "O5'" SING N N 4 GN7 OP2 HOP2 SING N N 5 GN7 OP3 HOP3 SING N N 6 GN7 "O5'" "C5'" SING N N 7 GN7 "C5'" "C4'" SING N N 8 GN7 "C5'" "H5'" SING N N 9 GN7 "C5'" "H5''" SING N N 10 GN7 "C4'" "O4'" SING N N 11 GN7 "C4'" "C3'" SING N N 12 GN7 "C4'" "H4'" SING N N 13 GN7 "O4'" "C1'" SING N N 14 GN7 "C3'" "O3'" SING N N 15 GN7 "C3'" "C2'" SING N N 16 GN7 "C3'" "H3'" SING N N 17 GN7 "O3'" "HO3'" SING N N 18 GN7 "C2'" "C1'" SING N N 19 GN7 "C2'" "H2'" SING N N 20 GN7 "C2'" "H2''" SING N N 21 GN7 "C1'" N7 SING N N 22 GN7 "C1'" "H1'" SING N N 23 GN7 N9 C8 DOUB Y N 24 GN7 N9 C4 SING Y N 25 GN7 C8 N7 SING Y N 26 GN7 C8 H8 SING N N 27 GN7 N7 C5 SING Y N 28 GN7 C5 C6 SING N N 29 GN7 C5 C4 DOUB Y N 30 GN7 C6 O6 DOUB N N 31 GN7 C6 N1 SING N N 32 GN7 N1 C2 SING N N 33 GN7 N1 HN1 SING N N 34 GN7 C2 N2 SING N N 35 GN7 C2 N3 DOUB N N 36 GN7 N2 HN21 SING N N 37 GN7 N2 HN22 SING N N 38 GN7 N3 C4 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GN7 SMILES ACDLabs 10.04 "O=C3c1c(ncn1C2OC(C(O)C2)COP(=O)(O)O)N=C(N)N3" GN7 SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2ncn([C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c2C(=O)N1" GN7 SMILES CACTVS 3.341 "NC1=Nc2ncn([CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c2C(=O)N1" GN7 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)C(=O)NC(=N2)N" GN7 SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)O)O)C(=O)NC(=N2)N" GN7 InChI InChI 1.03 "InChI=1S/C10H14N5O7P/c11-10-13-8-7(9(17)14-10)15(3-12-8)6-1-4(16)5(22-6)2-21-23(18,19)20/h3-6,16H,1-2H2,(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,6+/m0/s1" GN7 InChIKey InChI 1.03 QJBOPENFRRNEQL-KVQBGUIXSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GN7 "SYSTEMATIC NAME" ACDLabs 10.04 "2-amino-7-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1,7-dihydro-6H-purin-6-one" GN7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(2-amino-6-oxo-1H-purin-7-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GN7 "Create component" 1999-07-08 RCSB GN7 "Modify descriptor" 2011-06-04 RCSB #