data_GN9 # _chem_comp.id GN9 _chem_comp.name "gallinamide A, bound form" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H54 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S)-1-{[(2S)-1-({(2S)-5-[(2S)-3-methoxy-2-methyl-5-oxo-2,5-dihydro-1H-pyrrol-1-yl]-5-oxopentan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]amino}-4-methyl-1-oxopentan-2-yl N,N-dimethyl-L-isoleucinate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-08-30 _chem_comp.pdbx_modified_date 2021-08-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 594.783 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GN9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JUJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GN9 C1 C1 C 0 1 N N N 141.416 32.594 34.469 7.573 -3.299 -0.960 C1 GN9 1 GN9 C2 C2 C 0 1 N N S 140.850 31.868 33.237 6.360 -2.475 -0.523 C2 GN9 2 GN9 C3 C3 C 0 1 N N N 141.653 30.585 33.008 5.399 -2.316 -1.704 C3 GN9 3 GN9 C4 C4 C 0 1 N N S 140.701 32.825 32.007 6.823 -1.095 -0.053 C4 GN9 4 GN9 C5 C5 C 0 1 N N N 141.481 32.456 30.743 5.645 -0.328 0.491 C5 GN9 5 GN9 C6 C6 C 0 1 N N S 142.566 33.450 28.738 3.725 1.061 0.240 C6 GN9 6 GN9 O1 O1 O 0 1 N N N 142.225 33.555 30.121 4.769 0.243 -0.351 O1 GN9 7 GN9 O2 O2 O 0 1 N N N 144.703 33.105 29.541 2.533 0.539 -1.730 O2 GN9 8 GN9 O3 O3 O 0 1 N N N 145.952 32.364 25.838 -0.723 2.889 0.540 O3 GN9 9 GN9 O4 O4 O 0 1 N N N 152.151 31.791 25.845 -6.937 1.370 -1.133 O4 GN9 10 GN9 O5 O5 O 0 1 N N N 151.633 30.068 29.589 -4.877 -0.880 1.513 O5 GN9 11 GN9 O6 O6 O 0 1 N N N 156.148 31.327 29.102 -8.961 -3.119 1.058 O6 GN9 12 GN9 C26 C7 C 0 1 N N N 152.707 30.545 29.060 -6.002 -1.118 1.116 C26 GN9 13 GN9 C25 C8 C 0 1 N N N 153.929 30.548 29.729 -6.773 -2.226 1.522 C25 GN9 14 GN9 C24 C9 C 0 1 N N N 154.813 31.137 28.812 -7.971 -2.216 0.911 C24 GN9 15 GN9 C27 C10 C 0 1 N N N 157.119 31.690 28.098 -8.718 -4.220 1.972 C27 GN9 16 GN9 C23 C11 C 0 1 N N S 154.210 31.558 27.515 -7.985 -0.990 0.024 C23 GN9 17 GN9 C28 C12 C 0 1 N N N 154.333 33.063 27.280 -8.152 -1.387 -1.444 C28 GN9 18 GN9 N2 N1 N 0 1 N N N 152.858 31.097 27.848 -6.676 -0.355 0.236 N2 GN9 19 GN9 C22 C13 C 0 1 N N N 151.873 31.275 26.905 -6.232 0.776 -0.347 C22 GN9 20 GN9 C21 C14 C 0 1 N N N 150.447 30.895 27.114 -4.857 1.301 -0.022 C21 GN9 21 GN9 C20 C15 C 0 1 N N N 149.589 31.355 25.942 -4.602 2.586 -0.813 C20 GN9 22 GN9 C18 C16 C 0 1 N N S 148.611 32.413 26.451 -3.206 3.119 -0.483 C18 GN9 23 GN9 C19 C17 C 0 1 N N N 149.286 33.566 27.192 -2.998 4.467 -1.176 C19 GN9 24 GN9 N1 N2 N 0 1 N N N 147.597 31.774 27.270 -2.196 2.167 -0.953 N1 GN9 25 GN9 C17 C18 C 0 1 N N N 146.338 31.806 26.869 -0.981 2.133 -0.372 C17 GN9 26 GN9 C12 C19 C 0 1 N N S 145.365 31.098 27.736 0.058 1.154 -0.856 C12 GN9 27 GN9 C13 C20 C 0 1 N N N 145.164 29.718 27.140 -0.470 -0.273 -0.693 C13 GN9 28 GN9 C14 C21 C 0 1 N N N 144.021 28.971 27.826 0.531 -1.259 -1.297 C14 GN9 29 GN9 C16 C22 C 0 1 N N N 143.732 27.656 27.129 0.064 -2.691 -1.025 C16 GN9 30 GN9 C15 C23 C 0 1 N N N 144.275 28.725 29.315 0.623 -1.032 -2.807 C15 GN9 31 GN9 N N3 N 0 1 N N N 144.112 31.823 27.816 1.283 1.314 -0.069 N GN9 32 GN9 C11 C24 C 0 1 N N N 143.897 32.776 28.716 2.472 0.952 -0.591 C11 GN9 33 GN9 C7 C25 C 0 1 N N N 142.627 34.833 28.076 4.183 2.520 0.283 C7 GN9 34 GN9 C8 C26 C 0 1 N N N 141.296 35.324 27.461 3.138 3.360 1.021 C8 GN9 35 GN9 C10 C27 C 0 1 N N N 140.522 34.243 26.702 3.093 2.942 2.492 C10 GN9 36 GN9 C9 C28 C 0 1 N N N 141.470 36.495 26.478 3.513 4.840 0.923 C9 GN9 37 GN9 O O7 O 0 1 N N N 141.489 31.332 30.240 5.489 -0.228 1.685 O GN9 38 GN9 N3 N4 N 0 1 N N N 139.267 33.052 31.644 7.834 -1.251 1.001 N3 GN9 39 GN9 C30 C29 C 0 1 N N N 139.160 34.092 30.595 8.259 0.056 1.521 C30 GN9 40 GN9 C29 C30 C 0 1 N N N 138.443 33.459 32.813 7.339 -2.112 2.083 C29 GN9 41 GN9 C C31 C 0 1 N N N 140.556 32.390 35.702 7.126 -4.720 -1.309 C GN9 42 GN9 H1 H1 H 0 1 N N N 142.426 32.209 34.674 8.030 -2.836 -1.835 H1 GN9 43 GN9 H2 H2 H 0 1 N N N 141.472 33.671 34.251 8.299 -3.335 -0.148 H2 GN9 44 GN9 H3 H3 H 0 1 N N N 139.830 31.554 33.504 5.850 -2.985 0.294 H3 GN9 45 GN9 H4 H4 H 0 1 N N N 141.686 30.001 33.940 5.070 -3.299 -2.039 H4 GN9 46 GN9 H5 H5 H 0 1 N N N 141.173 29.988 32.218 4.535 -1.729 -1.392 H5 GN9 47 GN9 H6 H6 H 0 1 N N N 142.677 30.843 32.701 5.910 -1.806 -2.521 H6 GN9 48 GN9 H7 H7 H 0 1 N N N 141.097 33.797 32.336 7.254 -0.550 -0.893 H7 GN9 49 GN9 H8 H8 H 0 1 N N N 141.830 32.830 28.206 3.520 0.713 1.253 H8 GN9 50 GN9 H9 H9 H 0 1 N N N 154.146 30.182 30.722 -6.447 -2.978 2.226 H9 GN9 51 GN9 H10 H10 H 0 1 N N N 158.111 31.785 28.564 -7.852 -4.789 1.634 H10 GN9 52 GN9 H11 H11 H 0 1 N N N 157.152 30.912 27.321 -8.527 -3.828 2.971 H11 GN9 53 GN9 H12 H12 H 0 1 N N N 156.834 32.650 27.643 -9.592 -4.871 1.998 H12 GN9 54 GN9 H13 H13 H 0 1 N N N 154.637 30.994 26.672 -8.787 -0.318 0.329 H13 GN9 55 GN9 H14 H14 H 0 1 N N N 155.377 33.313 27.038 -7.367 -2.090 -1.722 H14 GN9 56 GN9 H15 H15 H 0 1 N N N 153.682 33.358 26.444 -9.126 -1.856 -1.586 H15 GN9 57 GN9 H16 H16 H 0 1 N N N 154.029 33.602 28.189 -8.083 -0.498 -2.071 H16 GN9 58 GN9 H17 H17 H 0 1 N N N 150.079 31.366 28.037 -4.792 1.512 1.045 H17 GN9 59 GN9 H18 H18 H 0 1 N N N 150.375 29.801 27.207 -4.110 0.554 -0.291 H18 GN9 60 GN9 H19 H19 H 0 1 N N N 149.032 30.500 25.531 -4.667 2.374 -1.880 H19 GN9 61 GN9 H20 H20 H 0 1 N Y N 150.229 31.786 25.159 -5.349 3.332 -0.544 H20 GN9 62 GN9 H21 H21 H 0 1 N N N 148.114 32.843 25.569 -3.111 3.246 0.595 H21 GN9 63 GN9 H22 H22 H 0 1 N N N 148.523 34.284 27.527 -3.750 5.175 -0.826 H22 GN9 64 GN9 H23 H23 H 0 1 N N N 149.828 33.173 28.065 -2.004 4.847 -0.941 H23 GN9 65 GN9 H24 H24 H 0 1 N N N 149.994 34.071 26.518 -3.093 4.340 -2.255 H24 GN9 66 GN9 H25 H25 H 0 1 N N N 147.847 31.317 28.124 -2.402 1.562 -1.683 H25 GN9 67 GN9 H26 H26 H 0 1 N N N 145.793 30.988 28.743 0.274 1.344 -1.907 H26 GN9 68 GN9 H27 H27 H 0 1 N N N 144.932 29.822 26.070 -0.602 -0.493 0.367 H27 GN9 69 GN9 H28 H28 H 0 1 N N N 146.092 29.139 27.259 -1.428 -0.366 -1.206 H28 GN9 70 GN9 H29 H29 H 0 1 N N N 143.120 29.597 27.744 1.511 -1.105 -0.846 H29 GN9 71 GN9 H30 H30 H 0 1 N N N 142.907 27.141 27.643 -0.916 -2.845 -1.476 H30 GN9 72 GN9 H31 H31 H 0 1 N N N 143.449 27.850 26.084 0.777 -3.394 -1.456 H31 GN9 73 GN9 H32 H32 H 0 1 N N N 144.631 27.023 27.154 -0.002 -2.853 0.051 H32 GN9 74 GN9 H33 H33 H 0 1 N N N 144.484 29.682 29.815 1.336 -1.735 -3.238 H33 GN9 75 GN9 H34 H34 H 0 1 N N N 143.385 28.262 29.767 -0.357 -1.186 -3.259 H34 GN9 76 GN9 H35 H35 H 0 1 N N N 145.138 28.054 29.434 0.955 -0.012 -3.002 H35 GN9 77 GN9 H36 H36 H 0 1 N N N 143.383 31.597 27.170 1.239 1.680 0.828 H36 GN9 78 GN9 H37 H37 H 0 1 N N N 143.379 34.794 27.274 5.137 2.585 0.806 H37 GN9 79 GN9 H38 H38 H 0 1 N N N 142.940 35.562 28.838 4.299 2.895 -0.734 H38 GN9 80 GN9 H39 H39 H 0 1 N N N 140.659 35.674 28.287 2.159 3.202 0.568 H39 GN9 81 GN9 H40 H40 H 0 1 N N N 140.366 33.374 27.358 2.309 3.499 3.004 H40 GN9 82 GN9 H41 H41 H 0 1 N N N 139.547 34.644 26.386 2.884 1.874 2.560 H41 GN9 83 GN9 H42 H42 H 0 1 N N N 141.096 33.935 25.816 4.055 3.154 2.960 H42 GN9 84 GN9 H43 H43 H 0 1 N N N 142.023 37.308 26.970 3.545 5.138 -0.125 H43 GN9 85 GN9 H44 H44 H 0 1 N N N 142.030 36.152 25.595 2.769 5.439 1.448 H44 GN9 86 GN9 H45 H45 H 0 1 N N N 140.481 36.861 26.165 4.492 4.998 1.376 H45 GN9 87 GN9 H47 H47 H 0 1 N N N 138.102 34.248 30.339 7.419 0.539 2.019 H47 GN9 88 GN9 H48 H48 H 0 1 N N N 139.589 35.034 30.967 9.073 -0.083 2.233 H48 GN9 89 GN9 H49 H49 H 0 1 N N N 139.710 33.767 29.699 8.600 0.682 0.696 H49 GN9 90 GN9 H50 H50 H 0 1 N N N 138.516 32.692 33.598 6.919 -3.024 1.658 H50 GN9 91 GN9 H51 H51 H 0 1 N N N 138.810 34.420 33.203 8.163 -2.368 2.750 H51 GN9 92 GN9 H52 H52 H 0 1 N N N 137.393 33.566 32.502 6.568 -1.584 2.644 H52 GN9 93 GN9 H53 H53 H 0 1 N N N 141.001 32.927 36.553 7.990 -5.306 -1.620 H53 GN9 94 GN9 H54 H54 H 0 1 N N N 139.545 32.779 35.512 6.669 -5.182 -0.434 H54 GN9 95 GN9 H55 H55 H 0 1 N N N 140.498 31.317 35.935 6.400 -4.683 -2.121 H55 GN9 96 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GN9 O3 C17 DOUB N N 1 GN9 O4 C22 DOUB N N 2 GN9 C20 C18 SING N N 3 GN9 C20 C21 SING N N 4 GN9 C18 C19 SING N N 5 GN9 C18 N1 SING N N 6 GN9 C9 C8 SING N N 7 GN9 C10 C8 SING N N 8 GN9 C17 N1 SING N N 9 GN9 C17 C12 SING N N 10 GN9 C22 C21 SING N N 11 GN9 C22 N2 SING N N 12 GN9 C16 C14 SING N N 13 GN9 C13 C12 SING N N 14 GN9 C13 C14 SING N N 15 GN9 C28 C23 SING N N 16 GN9 C8 C7 SING N N 17 GN9 C23 N2 SING N N 18 GN9 C23 C24 SING N N 19 GN9 C12 N SING N N 20 GN9 N C11 SING N N 21 GN9 C14 C15 SING N N 22 GN9 N2 C26 SING N N 23 GN9 C7 C6 SING N N 24 GN9 C27 O6 SING N N 25 GN9 C11 C6 SING N N 26 GN9 C11 O2 DOUB N N 27 GN9 C6 O1 SING N N 28 GN9 C24 O6 SING N N 29 GN9 C24 C25 DOUB N N 30 GN9 C26 O5 DOUB N N 31 GN9 C26 C25 SING N N 32 GN9 O1 C5 SING N N 33 GN9 O C5 DOUB N N 34 GN9 C30 N3 SING N N 35 GN9 C5 C4 SING N N 36 GN9 N3 C4 SING N N 37 GN9 N3 C29 SING N N 38 GN9 C4 C2 SING N N 39 GN9 C3 C2 SING N N 40 GN9 C2 C1 SING N N 41 GN9 C1 C SING N N 42 GN9 C1 H1 SING N N 43 GN9 C1 H2 SING N N 44 GN9 C2 H3 SING N N 45 GN9 C3 H4 SING N N 46 GN9 C3 H5 SING N N 47 GN9 C3 H6 SING N N 48 GN9 C4 H7 SING N N 49 GN9 C6 H8 SING N N 50 GN9 C25 H9 SING N N 51 GN9 C27 H10 SING N N 52 GN9 C27 H11 SING N N 53 GN9 C27 H12 SING N N 54 GN9 C23 H13 SING N N 55 GN9 C28 H14 SING N N 56 GN9 C28 H15 SING N N 57 GN9 C28 H16 SING N N 58 GN9 C21 H17 SING N N 59 GN9 C21 H18 SING N N 60 GN9 C20 H19 SING N N 61 GN9 C20 H20 SING N N 62 GN9 C18 H21 SING N N 63 GN9 C19 H22 SING N N 64 GN9 C19 H23 SING N N 65 GN9 C19 H24 SING N N 66 GN9 N1 H25 SING N N 67 GN9 C12 H26 SING N N 68 GN9 C13 H27 SING N N 69 GN9 C13 H28 SING N N 70 GN9 C14 H29 SING N N 71 GN9 C16 H30 SING N N 72 GN9 C16 H31 SING N N 73 GN9 C16 H32 SING N N 74 GN9 C15 H33 SING N N 75 GN9 C15 H34 SING N N 76 GN9 C15 H35 SING N N 77 GN9 N H36 SING N N 78 GN9 C7 H37 SING N N 79 GN9 C7 H38 SING N N 80 GN9 C8 H39 SING N N 81 GN9 C10 H40 SING N N 82 GN9 C10 H41 SING N N 83 GN9 C10 H42 SING N N 84 GN9 C9 H43 SING N N 85 GN9 C9 H44 SING N N 86 GN9 C9 H45 SING N N 87 GN9 C30 H47 SING N N 88 GN9 C30 H48 SING N N 89 GN9 C30 H49 SING N N 90 GN9 C29 H50 SING N N 91 GN9 C29 H51 SING N N 92 GN9 C29 H52 SING N N 93 GN9 C H53 SING N N 94 GN9 C H54 SING N N 95 GN9 C H55 SING N N 96 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GN9 SMILES ACDLabs 12.01 "C(C)C(C)C(C(OC(C(=O)NC(C(=O)NC(CCC(=O)N1C(=O)C=C(OC)C1C)C)CC(C)C)CC(C)C)=O)N(C)C" GN9 InChI InChI 1.03 "InChI=1S/C31H54N4O7/c1-12-20(6)28(34(9)10)31(40)42-25(16-19(4)5)30(39)33-23(15-18(2)3)29(38)32-21(7)13-14-26(36)35-22(8)24(41-11)17-27(35)37/h17-23,25,28H,12-16H2,1-11H3,(H,32,38)(H,33,39)/t20-,21-,22-,23-,25-,28-/m0/s1" GN9 InChIKey InChI 1.03 KQLKGAFEYUEPPA-ISUPFBBGSA-N GN9 SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)[C@H](N(C)C)C(=O)O[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C)CCC(=O)N1[C@@H](C)C(=CC1=O)OC" GN9 SMILES CACTVS 3.385 "CC[CH](C)[CH](N(C)C)C(=O)O[CH](CC(C)C)C(=O)N[CH](CC(C)C)C(=O)N[CH](C)CCC(=O)N1[CH](C)C(=CC1=O)OC" GN9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)[C@@H](C(=O)O[C@@H](CC(C)C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C)CCC(=O)N1[C@H](C(=CC1=O)OC)C)N(C)C" GN9 SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)C(C(=O)OC(CC(C)C)C(=O)NC(CC(C)C)C(=O)NC(C)CCC(=O)N1C(C(=CC1=O)OC)C)N(C)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GN9 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-1-{[(2S)-1-({(2S)-5-[(2S)-3-methoxy-2-methyl-5-oxo-2,5-dihydro-1H-pyrrol-1-yl]-5-oxopentan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]amino}-4-methyl-1-oxopentan-2-yl N,N-dimethyl-L-isoleucinate" GN9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{S})-1-[[(2~{S})-1-[[(2~{S})-5-[(2~{S})-3-methoxy-2-methyl-5-oxidanylidene-2~{H}-pyrrol-1-yl]-5-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl] (2~{S},3~{S})-2-(dimethylamino)-3-methyl-pentanoate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id GN9 _pdbx_chem_comp_synonyms.name "(2S)-1-{[(2S)-1-({(2S)-5-[(2S)-3-methoxy-2-methyl-5-oxo-2,5-dihydro-1H-pyrrol-1-yl]-5-oxopentan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]amino}-4-methyl-1-oxopentan-2-yl N,N-dimethyl-L-isoleucinate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GN9 "Create component" 2020-08-30 RCSB GN9 "Modify leaving atom flag" 2020-08-31 RCSB GN9 "Modify synonyms" 2021-03-13 RCSB GN9 "Initial release" 2021-08-25 RCSB ##