data_GNG # _chem_comp.id GNG _chem_comp.name "2'-DEOXY-GUANOSINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H13 N5 O4" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-02-13 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 267.241 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GNG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1NH3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GNG "O5'" O5* O 0 1 N N N 117.235 -70.320 -4.555 -1.262 1.538 -4.849 "O5'" GNG 1 GNG "C5'" C5* C 0 1 N N N 116.006 -70.991 -4.266 -0.776 0.233 -4.528 "C5'" GNG 2 GNG "C4'" C4* C 0 1 N N R 115.102 -70.124 -3.412 0.245 0.335 -3.394 "C4'" GNG 3 GNG "O4'" O4* O 0 1 N N N 114.778 -68.883 -4.097 -0.385 0.786 -2.174 "O4'" GNG 4 GNG "C1'" C1* C 0 1 N N R 113.377 -68.796 -4.376 0.464 0.377 -1.089 "C1'" GNG 5 GNG N9 N9 N 0 1 Y N N 113.225 -68.433 -5.786 -0.350 0.036 0.080 N9 GNG 6 GNG C8 C8 C 0 1 Y N N 114.039 -68.843 -6.815 -1.630 -0.433 0.061 C8 GNG 7 GNG N7 N7 N 0 1 Y N N 113.634 -68.436 -7.987 -2.041 -0.626 1.281 N7 GNG 8 GNG C5 C5 C 0 1 Y N N 112.494 -67.700 -7.720 -1.051 -0.292 2.141 C5 GNG 9 GNG C4 C4 C 0 1 Y N N 112.229 -67.665 -6.360 0.032 0.131 1.382 C4 GNG 10 GNG N3 N3 N 0 1 N N N 111.217 -67.051 -5.718 1.174 0.534 2.025 N3 GNG 11 GNG C2 C2 C 0 1 N N N 110.406 -66.418 -6.566 1.248 0.508 3.382 C2 GNG 12 GNG N1 N1 N 0 1 N N N 110.585 -66.395 -7.931 0.246 0.113 4.137 N1 GNG 13 GNG C6 C6 C 0 1 N N N 111.618 -67.032 -8.609 -0.914 -0.294 3.601 C6 GNG 14 GNG O6 O6 O 0 1 N N N 111.674 -66.982 -9.844 -1.837 -0.657 4.314 O6 GNG 15 GNG N2 N2 N 0 1 N N N 109.332 -65.753 -6.108 2.408 0.913 3.986 N2 GNG 16 GNG "C2'" C2* C 0 1 N N N 112.814 -70.184 -4.125 1.249 -0.861 -1.559 "C2'" GNG 17 GNG "C3'" C3* C 0 1 N N S 113.760 -70.785 -3.105 0.791 -1.067 -3.024 "C3'" GNG 18 GNG "O3'" O3* O 0 1 N N N 113.301 -70.489 -1.785 1.895 -1.423 -3.858 "O3'" GNG 19 GNG "H5'" H5* H 0 1 N N N 117.801 -70.863 -5.090 -1.902 1.430 -5.566 "H5'" GNG 20 GNG "H5'1" 1H5* H 0 0 N N N 115.492 -71.328 -5.196 -0.301 -0.203 -5.406 "H5'1" GNG 21 GNG "H5'2" 2H5* H 0 0 N N N 116.181 -71.987 -3.798 -1.607 -0.396 -4.212 "H5'2" GNG 22 GNG "H4'" H4* H 0 1 N N N 115.673 -69.953 -2.469 1.061 1.002 -3.672 "H4'" GNG 23 GNG "H1'" H1* H 0 1 N N N 112.851 -68.039 -3.748 1.156 1.181 -0.836 "H1'" GNG 24 GNG H8 H8 H 0 1 N N N 114.950 -69.454 -6.708 -2.214 -0.616 -0.828 H8 GNG 25 GNG HN3 HN3 H 0 1 N N N 111.563 -66.420 -4.994 1.936 0.837 1.508 HN3 GNG 26 GNG HN21 1HN2 H 0 0 N N N 108.711 -65.268 -6.756 2.480 0.905 4.953 HN21 GNG 27 GNG HN22 2HN2 H 0 0 N N N 109.644 -65.084 -5.403 3.160 1.203 3.446 HN22 GNG 28 GNG "H2'1" 1H2* H 0 0 N N N 111.742 -70.195 -3.818 0.991 -1.730 -0.953 "H2'1" GNG 29 GNG "H2'2" 2H2* H 0 0 N N N 112.682 -70.798 -5.045 2.322 -0.671 -1.519 "H2'2" GNG 30 GNG "H3'" H3* H 0 1 N N N 113.831 -71.896 -3.158 0.003 -1.819 -3.083 "H3'" GNG 31 GNG H1 H1 H 0 1 N N N 112.466 -70.900 -1.594 2.244 -2.258 -3.519 H1 GNG 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GNG "O5'" "C5'" SING N N 1 GNG "O5'" "H5'" SING N N 2 GNG "C5'" "C4'" SING N N 3 GNG "C5'" "H5'1" SING N N 4 GNG "C5'" "H5'2" SING N N 5 GNG "C4'" "O4'" SING N N 6 GNG "C4'" "C3'" SING N N 7 GNG "C4'" "H4'" SING N N 8 GNG "O4'" "C1'" SING N N 9 GNG "C1'" N9 SING N N 10 GNG "C1'" "C2'" SING N N 11 GNG "C1'" "H1'" SING N N 12 GNG N9 C8 SING Y N 13 GNG N9 C4 SING Y N 14 GNG C8 N7 DOUB Y N 15 GNG C8 H8 SING N N 16 GNG N7 C5 SING Y N 17 GNG C5 C4 DOUB Y N 18 GNG C5 C6 SING N N 19 GNG C4 N3 SING N N 20 GNG N3 C2 SING N N 21 GNG N3 HN3 SING N N 22 GNG C2 N1 DOUB N N 23 GNG C2 N2 SING N N 24 GNG N1 C6 SING N N 25 GNG C6 O6 DOUB N N 26 GNG N2 HN21 SING N N 27 GNG N2 HN22 SING N N 28 GNG "C2'" "C3'" SING N N 29 GNG "C2'" "H2'1" SING N N 30 GNG "C2'" "H2'2" SING N N 31 GNG "C3'" "O3'" SING N N 32 GNG "C3'" "H3'" SING N N 33 GNG "O3'" H1 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GNG SMILES ACDLabs 10.04 "O=C3N=C(N)Nc1c3ncn1C2OC(C(O)C2)CO" GNG SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)c2ncn([C@H]3C[C@H](O)[C@@H](CO)O3)c2N1" GNG SMILES CACTVS 3.341 "NC1=NC(=O)c2ncn([CH]3C[CH](O)[CH](CO)O3)c2N1" GNG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO)O)NC(=NC2=O)N" GNG SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3CC(C(O3)CO)O)NC(=NC2=O)N" GNG InChI InChI 1.03 "InChI=1S/C10H13N5O4/c11-10-13-8-7(9(18)14-10)12-3-15(8)6-1-4(17)5(2-16)19-6/h3-6,16-17H,1-2H2,(H3,11,13,14,18)/t4-,5+,6+/m0/s1" GNG InChIKey InChI 1.03 YKBGVTZYEHREMT-KVQBGUIXSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GNG "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxyguanosine" GNG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-amino-9-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-3H-purin-6-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GNG "Create component" 2003-02-13 RCSB GNG "Modify descriptor" 2011-06-04 RCSB #