data_GNH
#
_chem_comp.id GNH
_chem_comp.name "AMINOPHOSPHONIC ACID-GUANYLATE ESTER"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H16 N6 O10 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 442.216
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GNH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1HOO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GNH N3B N3B N 0 1 N N N 31.144 63.084 -19.327 -2.170 -1.303 6.856 N3B GNH 1
GNH PB PB P 0 1 N N R 31.284 63.051 -17.678 -1.120 -0.331 5.971 PB GNH 2
GNH O1B O1B O 0 1 N N N 30.469 61.987 -17.002 -1.704 1.020 5.825 O1B GNH 3
GNH O2B O2B O 0 1 N N N 32.663 63.307 -17.230 0.290 -0.226 6.739 O2B GNH 4
GNH O3A O3A O 0 1 N N N 30.623 64.501 -17.483 -0.891 -0.977 4.514 O3A GNH 5
GNH PA PA P 0 1 N N S 29.435 64.789 -16.429 0.117 -0.001 3.726 PA GNH 6
GNH O1A O1A O 0 1 N N N 28.246 63.982 -16.840 -0.485 1.345 3.614 O1A GNH 7
GNH O2A O2A O 0 1 N N N 29.926 64.776 -15.020 1.507 0.098 4.532 O2A GNH 8
GNH "O5'" O5* O 0 1 N N N 29.217 66.317 -16.923 0.392 -0.589 2.253 "O5'" GNH 9
GNH "C5'" C5* C 0 1 N N N 28.698 67.405 -16.229 1.289 0.315 1.607 "C5'" GNH 10
GNH "C4'" C4* C 0 1 N N R 29.203 68.600 -16.930 1.593 -0.187 0.194 "C4'" GNH 11
GNH "O4'" O4* O 0 1 N N N 28.864 69.700 -16.091 0.382 -0.245 -0.589 "O4'" GNH 12
GNH "C3'" C3* C 0 1 N N S 30.723 68.614 -16.964 2.500 0.814 -0.552 "C3'" GNH 13
GNH "O3'" O3* O 0 1 N N N 31.237 69.320 -18.092 3.865 0.394 -0.495 "O3'" GNH 14
GNH "C2'" C2* C 0 1 N N R 31.073 69.116 -15.504 1.981 0.778 -2.009 "C2'" GNH 15
GNH "O2'" O2* O 0 1 N N N 32.337 69.816 -15.333 3.010 0.336 -2.896 "O2'" GNH 16
GNH "C1'" C1* C 0 1 N N R 29.858 69.961 -15.097 0.820 -0.239 -1.966 "C1'" GNH 17
GNH N9 N9 N 0 1 Y N N 29.360 69.715 -13.819 -0.268 0.191 -2.845 N9 GNH 18
GNH C8 C8 C 0 1 Y N N 29.064 68.569 -13.139 -1.308 1.007 -2.503 C8 GNH 19
GNH N7 N7 N 0 1 Y N N 28.390 68.673 -12.035 -2.089 1.180 -3.529 N7 GNH 20
GNH C5 C5 C 0 1 Y N N 28.212 70.050 -11.951 -1.599 0.490 -4.587 C5 GNH 21
GNH C6 C6 C 0 1 Y N N 27.529 70.832 -10.942 -2.018 0.313 -5.927 C6 GNH 22
GNH O6 O6 O 0 1 N N N 26.905 70.465 -9.942 -3.030 0.851 -6.341 O6 GNH 23
GNH N1 N1 N 0 1 Y N N 27.589 72.180 -11.265 -1.265 -0.462 -6.737 N1 GNH 24
GNH C2 C2 C 0 1 Y N N 28.220 72.656 -12.395 -0.138 -1.064 -6.262 C2 GNH 25
GNH N2 N2 N 0 1 N N N 28.183 73.974 -12.555 0.603 -1.851 -7.106 N2 GNH 26
GNH N3 N3 N 0 1 Y N N 28.864 71.956 -13.351 0.261 -0.907 -5.019 N3 GNH 27
GNH C4 C4 C 0 1 Y N N 28.805 70.667 -13.046 -0.430 -0.149 -4.161 C4 GNH 28
GNH HN31 1HN3 H 0 0 N N N 31.235 62.153 -19.803 -3.067 -1.257 6.396 HN31 GNH 29
GNH HN32 2HN3 H 0 0 N N N 30.883 63.873 -19.939 -2.284 -0.862 7.757 HN32 GNH 30
GNH HOB2 2HOB H 0 0 N N N 32.743 63.288 -16.283 0.635 -1.126 6.813 HOB2 GNH 31
GNH HOA2 2HOA H 0 0 N N N 29.226 64.945 -14.399 1.866 -0.798 4.582 HOA2 GNH 32
GNH "H5'2" 2H5* H 0 0 N N N 27.611 67.415 -16.281 0.830 1.302 1.550 "H5'2" GNH 33
GNH "H5'1" 1H5* H 0 0 N N N 29.034 67.372 -15.203 2.216 0.378 2.178 "H5'1" GNH 34
GNH "H4'" H4* H 0 1 N N N 28.761 68.720 -17.923 2.066 -1.169 0.236 "H4'" GNH 35
GNH "H3'" H3* H 0 1 N N N 31.067 67.586 -17.085 2.392 1.814 -0.132 "H3'" GNH 36
GNH "HO3'" *HO3 H 0 0 N N N 31.651 70.154 -17.859 4.381 1.055 -0.976 "HO3'" GNH 37
GNH "H2'" H2* H 0 1 N N N 31.072 68.210 -14.893 1.615 1.760 -2.308 "H2'" GNH 38
GNH "HO2'" *HO2 H 0 0 N N N 32.561 69.743 -14.397 3.729 0.980 -2.833 "HO2'" GNH 39
GNH "H1'" H1* H 0 1 N N N 30.133 71.014 -15.135 1.172 -1.229 -2.256 "H1'" GNH 40
GNH H8 H8 H 0 1 N N N 29.487 67.606 -13.419 -1.459 1.442 -1.526 H8 GNH 41
GNH HN1 HN1 H 0 1 N N N 27.154 72.863 -10.658 -1.532 -0.598 -7.660 HN1 GNH 42
GNH HN21 1HN2 H 0 0 N N N 29.005 74.503 -12.590 1.410 -2.282 -6.784 HN21 GNH 43
GNH HN22 2HN2 H 0 0 N N N 27.332 74.467 -12.572 0.319 -1.979 -8.025 HN22 GNH 44
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GNH N3B PB SING N N 1
GNH N3B HN31 SING N N 2
GNH N3B HN32 SING N N 3
GNH PB O1B DOUB N N 4
GNH PB O2B SING N N 5
GNH PB O3A SING N N 6
GNH O2B HOB2 SING N N 7
GNH O3A PA SING N N 8
GNH PA O1A DOUB N N 9
GNH PA O2A SING N N 10
GNH PA "O5'" SING N N 11
GNH O2A HOA2 SING N N 12
GNH "O5'" "C5'" SING N N 13
GNH "C5'" "C4'" SING N N 14
GNH "C5'" "H5'2" SING N N 15
GNH "C5'" "H5'1" SING N N 16
GNH "C4'" "O4'" SING N N 17
GNH "C4'" "C3'" SING N N 18
GNH "C4'" "H4'" SING N N 19
GNH "O4'" "C1'" SING N N 20
GNH "C3'" "O3'" SING N N 21
GNH "C3'" "C2'" SING N N 22
GNH "C3'" "H3'" SING N N 23
GNH "O3'" "HO3'" SING N N 24
GNH "C2'" "O2'" SING N N 25
GNH "C2'" "C1'" SING N N 26
GNH "C2'" "H2'" SING N N 27
GNH "O2'" "HO2'" SING N N 28
GNH "C1'" N9 SING N N 29
GNH "C1'" "H1'" SING N N 30
GNH N9 C8 SING Y N 31
GNH N9 C4 SING Y N 32
GNH C8 N7 DOUB Y N 33
GNH C8 H8 SING N N 34
GNH N7 C5 SING Y N 35
GNH C5 C6 SING Y N 36
GNH C5 C4 DOUB Y N 37
GNH C6 O6 DOUB N N 38
GNH C6 N1 SING Y N 39
GNH N1 C2 SING Y N 40
GNH N1 HN1 SING N N 41
GNH C2 N2 SING N N 42
GNH C2 N3 DOUB Y N 43
GNH N2 HN21 SING N N 44
GNH N2 HN22 SING N N 45
GNH N3 C4 SING Y N 46
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GNH SMILES ACDLabs 10.04 "O=P(O)(OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O)N"
GNH SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@@](N)(O)=O)[C@@H](O)[C@H]3O"
GNH SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](N)(O)=O)[CH](O)[CH]3O"
GNH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(N)O)O)O)N=C(NC2=O)N"
GNH SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(N)O)O)O)N=C(NC2=O)N"
GNH InChI InChI 1.03 "InChI=1S/C10H16N6O10P2/c11-10-14-7-4(8(19)15-10)13-2-16(7)9-6(18)5(17)3(25-9)1-24-28(22,23)26-27(12,20)21/h2-3,5-6,9,17-18H,1H2,(H,22,23)(H3,12,20,21)(H3,11,14,15,19)/t3-,5-,6-,9-/m1/s1"
GNH InChIKey InChI 1.03 ZGPDMUBRWRJAQQ-UUOKFMHZSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GNH "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(S)-{[(R)-amino(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]guanosine"
GNH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxyphosphonamidic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GNH "Create component" 1999-07-08 RCSB
GNH "Modify descriptor" 2011-06-04 RCSB
#