data_GP2 # _chem_comp.id GP2 _chem_comp.name "PHOSPHOMETHYLPHOSPHONIC ACID GUANOSYL ESTER" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H17 N5 O10 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-01-14 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 441.228 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GP2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1S1D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GP2 O6 O6 O 0 1 N N N 19.472 -8.521 46.559 -3.098 0.876 -6.330 O6 GP2 1 GP2 C6 C6 C 0 1 N N N 20.410 -7.813 46.911 -2.086 0.323 -5.934 C6 GP2 2 GP2 C5 C5 C 0 1 Y N N 20.222 -6.451 47.108 -1.635 0.502 -4.605 C5 GP2 3 GP2 N7 N7 N 0 1 Y N N 19.162 -5.623 46.946 -2.089 1.208 -3.541 N7 GP2 4 GP2 C4 C4 C 0 1 Y N N 21.286 -5.698 47.603 -0.467 -0.154 -4.200 C4 GP2 5 GP2 N3 N3 N 0 1 N N N 22.504 -6.264 47.865 0.191 -0.930 -5.068 N3 GP2 6 GP2 C2 C2 C 0 1 N N N 22.694 -7.618 47.659 -0.237 -1.088 -6.300 C2 GP2 7 GP2 N1 N1 N 0 1 N N N 21.644 -8.384 47.176 -1.364 -0.471 -6.755 N1 GP2 8 GP2 N2 N2 N 0 1 N N N 23.914 -8.144 47.767 0.472 -1.894 -7.155 N2 GP2 9 GP2 N9 N9 N 0 1 Y N N 20.847 -4.406 47.723 -0.271 0.192 -2.891 N9 GP2 10 GP2 C8 C8 C 0 1 Y N N 19.532 -4.363 47.310 -1.289 1.028 -2.531 C8 GP2 11 GP2 "C1'" C1* C 0 1 N N R 21.738 -3.330 48.189 0.829 -0.251 -2.032 "C1'" GP2 12 GP2 "C2'" C2* C 0 1 N N R 21.491 -1.961 47.550 2.006 0.746 -2.107 "C2'" GP2 13 GP2 "O2'" O2* O 0 1 N N N 21.920 -1.878 46.188 3.007 0.280 -3.014 "O2'" GP2 14 GP2 "C3'" C3* C 0 1 N N S 22.239 -1.058 48.526 2.557 0.783 -0.663 "C3'" GP2 15 GP2 "O3'" O3* O 0 1 N N N 23.546 -0.828 48.059 3.915 0.339 -0.633 "O3'" GP2 16 GP2 "O4'" O4* O 0 1 N N N 21.689 -3.130 49.586 0.421 -0.240 -0.646 "O4'" GP2 17 GP2 "C4'" C4* C 0 1 N N R 22.307 -1.880 49.827 1.650 -0.198 0.111 "C4'" GP2 18 GP2 "C5'" C5* C 0 1 N N N 21.626 -1.219 51.023 1.386 0.320 1.526 "C5'" GP2 19 GP2 "O5'" O5* O 0 1 N N N 20.389 -1.825 51.421 0.487 -0.565 2.197 "O5'" GP2 20 GP2 PA PA P 0 1 N N S 19.371 -0.880 52.283 0.255 0.037 3.672 PA GP2 21 GP2 O1A O1A O 0 1 N N N 18.426 -0.175 51.376 1.550 0.112 4.384 O1A GP2 22 GP2 O2A O2A O 0 1 N N N 18.579 -1.619 53.380 -0.378 1.512 3.554 O2A GP2 23 GP2 C3A C3A C 0 1 N N N 20.453 0.205 53.091 -0.885 -1.041 4.597 C3A GP2 24 GP2 PB PB P 0 1 N N N 19.945 1.847 53.040 -1.148 -0.359 6.267 PB GP2 25 GP2 O1B O1B O 0 1 N N N 19.477 2.274 51.690 -1.731 0.997 6.159 O1B GP2 26 GP2 O3B O3B O 0 1 N N N 21.196 2.658 53.421 -2.156 -1.312 7.084 O3B GP2 27 GP2 O2B O2B O 0 1 N N N 18.801 2.006 54.055 0.260 -0.278 7.041 O2B GP2 28 GP2 HN1 HN1 H 0 1 N N N 21.781 -9.381 47.013 -1.653 -0.608 -7.670 HN1 GP2 29 GP2 HN21 1HN2 H 0 0 N N N 24.054 -9.142 47.615 1.278 -2.337 -6.847 HN21 GP2 30 GP2 HN22 2HN2 H 0 0 N N N 24.289 -7.901 48.683 0.165 -2.023 -8.066 HN22 GP2 31 GP2 H8 H8 H 0 1 N N N 18.884 -3.470 47.276 -1.412 1.473 -1.555 H8 GP2 32 GP2 "H1'" H1* H 0 1 N N N 22.736 -3.710 47.870 1.157 -1.249 -2.323 "H1'" GP2 33 GP2 H1 H1 H 0 1 N N N 20.417 -1.685 47.431 1.650 1.732 -2.406 H1 GP2 34 GP2 "H2'" H2* H 0 1 N N N 21.766 -1.028 45.791 3.739 0.911 -2.971 "H2'" GP2 35 GP2 "H3'" H3* H 0 1 N N N 21.742 -0.068 48.656 2.476 1.787 -0.247 "H3'" GP2 36 GP2 H2 H2 H 0 1 N N N 24.011 -0.265 48.666 4.432 0.988 -1.130 H2 GP2 37 GP2 "H4'" H4* H 0 1 N N N 23.384 -1.976 50.096 2.106 -1.187 0.149 "H4'" GP2 38 GP2 "H5'1" 1H5* H 0 0 N N N 22.327 -1.169 51.888 2.325 0.370 2.076 "H5'1" GP2 39 GP2 "H5'2" 2H5* H 0 0 N N N 21.478 -0.130 50.830 0.943 1.314 1.471 "H5'2" GP2 40 GP2 H2A H2A H 0 1 N N N 17.987 -1.069 53.880 -1.218 1.419 3.085 H2A GP2 41 GP2 H3A1 1H3A H 0 0 N N N 20.626 -0.121 54.142 -0.456 -2.040 4.676 H3A1 GP2 42 GP2 H3A2 2H3A H 0 0 N N N 21.488 0.100 52.690 -1.839 -1.096 4.072 H3A2 GP2 43 GP2 H3B H3B H 0 1 N N N 20.915 3.565 53.392 -2.268 -0.916 7.959 H3B GP2 44 GP2 H2B H2B H 0 1 N N N 18.520 2.913 54.026 0.604 -1.180 7.090 H2B GP2 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GP2 O6 C6 DOUB N N 1 GP2 C6 C5 SING N N 2 GP2 C6 N1 SING N N 3 GP2 C5 N7 SING Y N 4 GP2 C5 C4 DOUB Y N 5 GP2 N7 C8 DOUB Y N 6 GP2 C4 N3 SING N N 7 GP2 C4 N9 SING Y N 8 GP2 N3 C2 DOUB N N 9 GP2 C2 N1 SING N N 10 GP2 C2 N2 SING N N 11 GP2 N1 HN1 SING N N 12 GP2 N2 HN21 SING N N 13 GP2 N2 HN22 SING N N 14 GP2 N9 C8 SING Y N 15 GP2 N9 "C1'" SING N N 16 GP2 C8 H8 SING N N 17 GP2 "C1'" "C2'" SING N N 18 GP2 "C1'" "O4'" SING N N 19 GP2 "C1'" "H1'" SING N N 20 GP2 "C2'" "O2'" SING N N 21 GP2 "C2'" "C3'" SING N N 22 GP2 "C2'" H1 SING N N 23 GP2 "O2'" "H2'" SING N N 24 GP2 "C3'" "O3'" SING N N 25 GP2 "C3'" "C4'" SING N N 26 GP2 "C3'" "H3'" SING N N 27 GP2 "O3'" H2 SING N N 28 GP2 "O4'" "C4'" SING N N 29 GP2 "C4'" "C5'" SING N N 30 GP2 "C4'" "H4'" SING N N 31 GP2 "C5'" "O5'" SING N N 32 GP2 "C5'" "H5'1" SING N N 33 GP2 "C5'" "H5'2" SING N N 34 GP2 "O5'" PA SING N N 35 GP2 PA O1A DOUB N N 36 GP2 PA O2A SING N N 37 GP2 PA C3A SING N N 38 GP2 O2A H2A SING N N 39 GP2 C3A PB SING N N 40 GP2 C3A H3A1 SING N N 41 GP2 C3A H3A2 SING N N 42 GP2 PB O1B DOUB N N 43 GP2 PB O3B SING N N 44 GP2 PB O2B SING N N 45 GP2 O3B H3B SING N N 46 GP2 O2B H2B SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GP2 SMILES ACDLabs 10.04 "O=P(O)(O)CP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O" GP2 SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@](O)(=O)C[P](O)(O)=O)[C@@H](O)[C@H]3O" GP2 SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)C[P](O)(O)=O)[CH](O)[CH]3O" GP2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(CP(=O)(O)O)O)O)O)N=C(NC2=O)N" GP2 SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(CP(=O)(O)O)O)O)O)N=C(NC2=O)N" GP2 InChI InChI 1.03 "InChI=1S/C11H17N5O10P2/c12-11-14-8-5(9(19)15-11)13-2-16(8)10-7(18)6(17)4(26-10)1-25-28(23,24)3-27(20,21)22/h2,4,6-7,10,17-18H,1,3H2,(H,23,24)(H2,20,21,22)(H3,12,14,15,19)/t4-,6-,7-,10-/m1/s1" GP2 InChIKey InChI 1.03 OCJWYBKRHNXUME-KQYNXXCUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GP2 "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(S)-hydroxy(phosphonomethyl)phosphoryl]guanosine" GP2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]methylphosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GP2 "Create component" 2004-01-14 RCSB GP2 "Modify descriptor" 2011-06-04 RCSB #