data_GP3 # _chem_comp.id GP3 _chem_comp.name "DIGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H27 N10 O18 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 788.406 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GP3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1CKO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GP3 N9A AN9 N 0 1 Y N N 44.687 61.859 -3.237 0.224 -0.696 -8.635 N9A GP3 1 GP3 C8A AC8 C 0 1 Y N N 45.326 62.778 -2.439 -0.954 -1.289 -8.287 C8A GP3 2 GP3 N7A AN7 N 0 1 Y N N 44.936 64.034 -2.568 -1.243 -2.230 -9.138 N7A GP3 3 GP3 C5A AC5 C 0 1 Y N N 43.978 63.957 -3.550 -0.270 -2.296 -10.080 C5A GP3 4 GP3 C6A AC6 C 0 1 N N N 43.204 64.964 -4.065 -0.057 -3.105 -11.221 C6A GP3 5 GP3 O6A AO6 O 0 1 N N N 43.279 66.116 -3.709 -0.857 -3.971 -11.531 O6A GP3 6 GP3 N1A AN1 N 0 1 N N N 42.308 64.540 -5.036 1.051 -2.889 -11.962 N1A GP3 7 GP3 C2A AC2 C 0 1 N N N 42.203 63.258 -5.449 1.941 -1.921 -11.603 C2A GP3 8 GP3 N2A AN2 N 0 1 N N N 41.308 62.965 -6.421 3.062 -1.728 -12.372 N2A GP3 9 GP3 N3A AN3 N 0 1 N N N 42.931 62.269 -4.950 1.755 -1.164 -10.546 N3A GP3 10 GP3 C4A AC4 C 0 1 Y N N 43.804 62.672 -3.997 0.677 -1.315 -9.767 C4A GP3 11 GP3 O5D AO5* O 0 1 N N N 46.514 58.176 -6.505 0.413 1.078 -3.750 O5D GP3 12 GP3 C5D AC5* C 0 1 N N N 45.170 58.181 -6.027 0.003 1.996 -4.765 C5D GP3 13 GP3 C4D AC4* C 0 1 N N R 45.083 58.568 -4.632 0.790 1.722 -6.048 C4D GP3 14 GP3 O4D AO4* O 0 1 N N N 45.508 59.904 -4.429 0.522 0.386 -6.526 O4D GP3 15 GP3 C3D AC3* C 0 1 N N S 43.658 58.569 -4.287 0.311 2.651 -7.185 C3D GP3 16 GP3 O3D AO3* O 0 1 N N N 43.158 57.264 -4.015 1.185 3.774 -7.316 O3D GP3 17 GP3 C2D AC2* C 0 1 N N R 43.614 59.375 -3.097 0.375 1.763 -8.450 C2D GP3 18 GP3 O2D AO2* O 0 1 N N N 43.749 58.483 -1.996 1.289 2.312 -9.401 O2D GP3 19 GP3 C1D AC1* C 0 1 N N R 44.883 60.342 -3.236 0.883 0.402 -7.925 C1D GP3 20 GP3 PA PA P 0 1 N N R 47.164 56.795 -6.906 -0.450 1.422 -2.435 PA GP3 21 GP3 O1A O1A O 0 1 N N N 48.126 57.031 -8.005 -0.182 2.817 -2.020 O1A GP3 22 GP3 O2A O2A O 0 1 N N N 47.597 56.082 -5.687 -2.017 1.252 -2.762 O2A GP3 23 GP3 O3A O3A O 0 1 N N N 45.912 56.095 -7.447 -0.038 0.420 -1.245 O3A GP3 24 GP3 PB PB P 0 1 N N N 45.746 54.908 -8.355 -0.935 0.819 0.030 PB GP3 25 GP3 O1B O1B O 0 1 N N N 46.552 55.143 -9.559 -2.368 0.672 -0.307 O1B GP3 26 GP3 O2B O2B O 0 1 N N N 44.272 54.677 -8.491 -0.635 2.347 0.440 O2B GP3 27 GP3 O3B O3B O 0 1 N N N 46.365 53.680 -7.552 -0.573 -0.148 1.265 O3B GP3 28 GP3 PG PG P 0 1 N N R 45.720 52.279 -7.111 -1.501 0.305 2.500 PG GP3 29 GP3 O1G O1G O 0 1 N N N 46.786 51.503 -6.370 -2.926 0.165 2.123 O1G GP3 30 GP3 O2G O2G O 0 1 N N N 45.067 51.613 -8.279 -1.192 1.841 2.868 O2G GP3 31 GP3 O5E BO5* O 0 1 N N N 44.602 52.756 -6.052 -1.190 -0.625 3.776 O5E GP3 32 GP3 C5E BC5* C 0 1 N N N 44.977 53.492 -4.838 -2.041 -0.176 4.832 C5E GP3 33 GP3 C4E BC4* C 0 1 N N R 43.800 54.157 -3.993 -1.793 -1.024 6.082 C4E GP3 34 GP3 O4E BO4* O 0 1 N N N 42.681 53.287 -3.758 -0.432 -0.869 6.516 O4E GP3 35 GP3 C3E BC3* C 0 1 N N S 44.220 54.592 -2.603 -2.701 -0.542 7.230 C3E GP3 36 GP3 O3E BO3* O 0 1 N N N 44.978 55.813 -2.594 -3.567 -1.591 7.666 O3E GP3 37 GP3 C2E BC2* C 0 1 N N R 42.959 54.761 -1.898 -1.708 -0.154 8.357 C2E GP3 38 GP3 O2E BO2* O 0 1 N N N 42.514 56.096 -2.105 -2.194 -0.578 9.632 O2E GP3 39 GP3 C1E BC1* C 0 1 N N R 41.977 53.763 -2.612 -0.438 -0.947 7.957 C1E GP3 40 GP3 N9B BN9 N 0 1 Y N N 41.377 52.677 -1.761 0.762 -0.317 8.513 N9B GP3 41 GP3 C8B BC8 C 0 1 Y N N 40.059 52.368 -1.601 1.473 0.701 7.949 C8B GP3 42 GP3 N7B BN7 N 0 1 Y N N 39.751 51.455 -0.729 2.480 1.012 8.713 N7B GP3 43 GP3 C5B BC5 C 0 1 Y N N 41.005 51.109 -0.228 2.475 0.214 9.808 C5B GP3 44 GP3 C6B BC6 C 0 1 N N N 41.340 50.150 0.786 3.304 0.102 10.949 C6B GP3 45 GP3 O6B BO6 O 0 1 N N N 40.543 49.461 1.439 4.271 0.830 11.092 O6B GP3 46 GP3 N1B BN1 N 0 1 N N N 42.727 50.093 1.033 2.997 -0.832 11.875 N1B GP3 47 GP3 C2B BC2 C 0 1 N N N 43.680 50.845 0.342 1.913 -1.640 11.705 C2B GP3 48 GP3 N2B BN2 N 0 1 N N N 44.981 50.690 0.659 1.626 -2.580 12.663 N2B GP3 49 GP3 N3B BN3 N 0 1 N N N 43.341 51.736 -0.616 1.135 -1.546 10.650 N3B GP3 50 GP3 C4B BC4 C 0 1 Y N N 42.007 51.837 -0.838 1.373 -0.640 9.694 C4B GP3 51 GP3 H8A AH8 H 0 1 N N N 46.122 62.517 -1.721 -1.557 -1.019 -7.432 H8A GP3 52 GP3 H1A AH1 H 0 1 N N N 41.684 65.216 -5.476 1.219 -3.431 -12.749 H1A GP3 53 GP3 H21A AH21 H 0 0 N N N 41.228 61.997 -6.732 3.702 -1.041 -12.132 H21A GP3 54 GP3 H22A AH22 H 0 0 N N N 41.489 63.560 -7.229 3.215 -2.282 -13.154 H22A GP3 55 GP3 H51A AH51 H 0 0 N N N 44.518 58.823 -6.664 0.196 3.016 -4.432 H51A GP3 56 GP3 H52A AH52 H 0 0 N N N 44.676 57.196 -6.203 -1.061 1.873 -4.959 H52A GP3 57 GP3 H4D AH4* H 0 1 N N N 45.713 57.871 -4.031 1.858 1.855 -5.874 H4D GP3 58 GP3 H3D AH3* H 0 1 N N N 43.027 58.950 -5.123 -0.710 2.983 -7.002 H3D GP3 59 GP3 HO3A AHO3 H 0 0 N N N 42.234 57.264 -3.791 0.837 4.317 -8.037 HO3A GP3 60 GP3 H2D AH2* H 0 1 N N N 42.680 59.968 -2.953 -0.614 1.655 -8.892 H2D GP3 61 GP3 HO2A AHO2 H 0 0 N N N 43.719 59.015 -1.209 0.950 3.184 -9.644 HO2A GP3 62 GP3 H1D AH1* H 0 1 N N N 45.477 60.244 -2.297 1.965 0.331 -8.038 H1D GP3 63 GP3 HOA2 2HOA H 0 0 N N N 47.988 55.250 -5.928 -2.148 0.331 -3.028 HOA2 GP3 64 GP3 HOB2 2HOB H 0 0 N N N 44.167 53.927 -9.064 0.306 2.400 0.653 HOB2 GP3 65 GP3 HOG2 2HOG H 0 0 N N N 44.685 50.783 -8.017 -0.256 1.889 3.107 HOG2 GP3 66 GP3 H51B BH51 H 0 0 N N N 45.579 52.828 -4.174 -1.824 0.868 5.054 H51B GP3 67 GP3 H52B BH52 H 0 0 N N N 45.732 54.270 -5.095 -3.082 -0.274 4.527 H52B GP3 68 GP3 H4E BH4* H 0 1 N N N 43.522 55.021 -4.639 -1.996 -2.072 5.864 H4E GP3 69 GP3 H3E BH3* H 0 1 N N N 44.899 53.843 -2.133 -3.282 0.325 6.918 H3E GP3 70 GP3 HO3B BHO3 H 0 0 N N N 45.241 56.085 -1.722 -4.064 -1.248 8.422 HO3B GP3 71 GP3 H2E BH2* H 0 1 N N N 43.030 54.571 -0.801 -1.514 0.918 8.354 H2E GP3 72 GP3 HO2B BHO2 H 0 0 N N N 41.690 56.206 -1.644 -2.981 -0.049 9.821 HO2B GP3 73 GP3 H1E BH1* H 0 1 N N N 41.045 54.307 -2.892 -0.513 -1.983 8.286 H1E GP3 74 GP3 H8B BH8 H 0 1 N N N 39.249 52.852 -2.172 1.237 1.178 7.009 H8B GP3 75 GP3 H1B BH1 H 0 1 N N N 43.064 49.464 1.762 3.551 -0.927 12.666 H1B GP3 76 GP3 H21B BH21 H 0 0 N N N 45.676 51.239 0.154 0.858 -3.163 12.555 H21B GP3 77 GP3 H22B BH22 H 0 0 N N N 45.223 49.701 0.585 2.191 -2.662 13.447 H22B GP3 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GP3 N9A C8A SING Y N 1 GP3 N9A C4A SING Y N 2 GP3 N9A C1D SING N N 3 GP3 C8A N7A DOUB Y N 4 GP3 C8A H8A SING N N 5 GP3 N7A C5A SING Y N 6 GP3 C5A C6A SING N N 7 GP3 C5A C4A DOUB Y N 8 GP3 C6A O6A DOUB N N 9 GP3 C6A N1A SING N N 10 GP3 N1A C2A SING N N 11 GP3 N1A H1A SING N N 12 GP3 C2A N2A SING N N 13 GP3 C2A N3A DOUB N N 14 GP3 N2A H21A SING N N 15 GP3 N2A H22A SING N N 16 GP3 N3A C4A SING N N 17 GP3 O5D C5D SING N N 18 GP3 O5D PA SING N N 19 GP3 C5D C4D SING N N 20 GP3 C5D H51A SING N N 21 GP3 C5D H52A SING N N 22 GP3 C4D O4D SING N N 23 GP3 C4D C3D SING N N 24 GP3 C4D H4D SING N N 25 GP3 O4D C1D SING N N 26 GP3 C3D O3D SING N N 27 GP3 C3D C2D SING N N 28 GP3 C3D H3D SING N N 29 GP3 O3D HO3A SING N N 30 GP3 C2D O2D SING N N 31 GP3 C2D C1D SING N N 32 GP3 C2D H2D SING N N 33 GP3 O2D HO2A SING N N 34 GP3 C1D H1D SING N N 35 GP3 PA O1A DOUB N N 36 GP3 PA O2A SING N N 37 GP3 PA O3A SING N N 38 GP3 O2A HOA2 SING N N 39 GP3 O3A PB SING N N 40 GP3 PB O1B DOUB N N 41 GP3 PB O2B SING N N 42 GP3 PB O3B SING N N 43 GP3 O2B HOB2 SING N N 44 GP3 O3B PG SING N N 45 GP3 PG O1G DOUB N N 46 GP3 PG O2G SING N N 47 GP3 PG O5E SING N N 48 GP3 O2G HOG2 SING N N 49 GP3 O5E C5E SING N N 50 GP3 C5E C4E SING N N 51 GP3 C5E H51B SING N N 52 GP3 C5E H52B SING N N 53 GP3 C4E O4E SING N N 54 GP3 C4E C3E SING N N 55 GP3 C4E H4E SING N N 56 GP3 O4E C1E SING N N 57 GP3 C3E O3E SING N N 58 GP3 C3E C2E SING N N 59 GP3 C3E H3E SING N N 60 GP3 O3E HO3B SING N N 61 GP3 C2E O2E SING N N 62 GP3 C2E C1E SING N N 63 GP3 C2E H2E SING N N 64 GP3 O2E HO2B SING N N 65 GP3 C1E N9B SING N N 66 GP3 C1E H1E SING N N 67 GP3 N9B C8B SING Y N 68 GP3 N9B C4B SING Y N 69 GP3 C8B N7B DOUB Y N 70 GP3 C8B H8B SING N N 71 GP3 N7B C5B SING Y N 72 GP3 C5B C6B SING N N 73 GP3 C5B C4B DOUB Y N 74 GP3 C6B O6B DOUB N N 75 GP3 C6B N1B SING N N 76 GP3 N1B C2B SING N N 77 GP3 N1B H1B SING N N 78 GP3 C2B N2B SING N N 79 GP3 C2B N3B DOUB N N 80 GP3 N2B H21B SING N N 81 GP3 N2B H22B SING N N 82 GP3 N3B C4B SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GP3 SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6C(=O)NC(=Nc56)N)[C@@H](O)[C@H]3O" GP3 SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6C(=O)NC(=Nc56)N)[CH](O)[CH]3O" GP3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)OP(=O)(O)O[P@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5N=C(NC6=O)N)O)O)O)O)N=C(NC2=O)N" GP3 SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5N=C(NC6=O)N)O)O)O)O)N=C(NC2=O)N" GP3 InChI InChI 1.03 ;InChI=1S/C20H27N10O18P3/c21-19-25-13-7(15(35)27-19)23-3-29(13)17-11(33)9(31)5(45-17)1-43-49(37,38)47-51(41,42)48-50(39,40)44-2-6-10(32)12(34)18(46-6)30-4-24-8-14(30)26-20(22)28-16(8)36/h3-6,9-12,17-18,31-34H,1-2H2,(H,37,38)(H,39,40)(H,41,42)(H3,21,25,27,35)(H3,22,26,28,36)/t5-,6-,9-,10-,11-,12-,17-,18-/m1/s1 ; GP3 InChIKey InChI 1.03 AAXYAFFKOSNMEB-MHARETSRSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GP3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl] [(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GP3 "Create component" 1999-07-08 RCSB GP3 "Modify descriptor" 2011-06-04 RCSB #