data_GP5 # _chem_comp.id GP5 _chem_comp.name DIGUANOSINE-PENTAPHOSPHATE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H29 N10 O24 P5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-11-09 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 948.366 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GP5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2BBW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GP5 O6 O6 O 0 1 N N N 10.109 5.950 0.597 12.193 -5.785 -0.243 O6 GP5 1 GP5 C6 C6 C 0 1 N N N 11.231 5.973 1.102 12.436 -4.592 -0.315 C6 GP5 2 GP5 N1 N1 N 0 1 N N N 11.571 6.959 2.021 13.695 -4.154 -0.535 N1 GP5 3 GP5 C2 C2 C 0 1 N N N 12.857 6.969 2.566 13.956 -2.818 -0.608 C2 GP5 4 GP5 N2 N2 N 0 1 N N N 13.121 7.924 3.443 15.245 -2.402 -0.826 N2 GP5 5 GP5 N3 N3 N 0 1 N N N 13.774 6.022 2.224 13.008 -1.917 -0.479 N3 GP5 6 GP5 C4 C4 C 0 1 Y N N 13.463 5.051 1.332 11.737 -2.276 -0.265 C4 GP5 7 GP5 C5 C5 C 0 1 Y N N 12.183 5.022 0.763 11.405 -3.633 -0.175 C5 GP5 8 GP5 N7 N7 N 0 1 Y N N 12.124 3.993 -0.071 10.070 -3.708 0.042 N7 GP5 9 GP5 C8 C8 C 0 1 Y N N 13.296 3.377 -0.044 9.573 -2.506 0.089 C8 GP5 10 GP5 N9 N9 N 0 1 Y N N 14.120 4.000 0.805 10.566 -1.588 -0.095 N9 GP5 11 GP5 "C1'" C1* C 0 1 N N S 15.517 3.495 0.995 10.408 -0.132 -0.109 "C1'" GP5 12 GP5 "O4'" O4* O 0 1 N N N 16.019 3.815 -0.307 9.040 0.228 -0.399 "O4'" GP5 13 GP5 "C2'" C2* C 0 1 N N S 16.544 4.162 1.884 10.649 0.457 1.305 "C2'" GP5 14 GP5 "O2'" O2* O 0 1 N N N 16.561 3.518 3.166 12.037 0.712 1.527 "O2'" GP5 15 GP5 "C3'" C3* C 0 1 N N R 17.840 3.853 1.128 9.845 1.781 1.244 "C3'" GP5 16 GP5 "O3'" O3* O 0 1 N N N 18.462 2.709 1.710 10.713 2.879 0.954 "O3'" GP5 17 GP5 "C4'" C4* C 0 1 N N S 17.388 3.494 -0.292 8.845 1.565 0.092 "C4'" GP5 18 GP5 "C5'" C5* C 0 1 N N N 17.885 4.427 -1.399 7.413 1.727 0.606 "C5'" GP5 19 GP5 "O5'" O5* O 0 1 N N N 18.379 3.693 -2.539 6.499 1.625 -0.489 "O5'" GP5 20 GP5 PCC PCC P 0 1 N N R 17.487 3.109 -3.807 5.020 1.804 0.121 PCC GP5 21 GP5 OAN OAN O 0 1 N N N 16.102 2.537 -3.192 4.810 0.815 1.202 OAN GP5 22 GP5 OAE OAE O 0 1 N N N 17.239 4.134 -4.838 4.861 3.291 0.716 OAE GP5 23 GP5 OBG OBG O 0 1 N N N 18.361 1.847 -4.329 3.929 1.570 -1.040 OBG GP5 24 GP5 PCE PCE P 0 1 N N S 19.207 1.201 -3.112 2.509 1.365 -0.309 PCE GP5 25 GP5 OAP OAP O 0 1 N N N 18.823 -0.345 -2.817 2.347 2.386 0.750 OAP GP5 26 GP5 OAG OAG O 0 1 N N N 20.516 1.899 -2.815 2.451 -0.104 0.348 OAG GP5 27 GP5 OBI OBI O 0 1 N N N 20.227 0.384 -4.192 1.324 1.517 -1.388 OBI GP5 28 GP5 PCG PCG P 0 1 N N R 19.890 -0.512 -5.537 -0.020 1.834 -0.560 PCG GP5 29 GP5 OAR OAR O 0 1 N N N 18.556 -1.315 -5.214 -0.049 1.011 0.669 OAR GP5 30 GP5 OAI OAI O 0 1 N N N 19.731 0.312 -6.763 -0.050 3.394 -0.162 OAI GP5 31 GP5 OBJ OBJ O 0 1 N N N 20.952 -1.663 -5.848 -1.304 1.488 -1.469 OBJ GP5 32 GP5 PCF PCF P 0 1 N N R 22.215 -2.171 -5.013 -2.574 1.440 -0.480 PCF GP5 33 GP5 OAQ OAQ O 0 1 N N N 21.682 -3.141 -3.853 -2.530 2.601 0.437 OAQ GP5 34 GP5 OAH OAH O 0 1 N N N 23.067 -1.078 -4.443 -2.535 0.077 0.377 OAH GP5 35 GP5 OBH OBH O 0 1 N N N 23.060 -3.019 -6.013 -3.930 1.491 -1.346 OBH GP5 36 GP5 PCD PCD P 0 1 N N S 22.659 -4.343 -6.800 -5.101 1.969 -0.350 PCD GP5 37 GP5 OAO OAO O 0 1 N N N 23.520 -5.424 -6.086 -4.922 1.322 0.969 OAO GP5 38 GP5 OAF OAF O 0 1 N N N 21.221 -4.728 -6.801 -5.036 3.568 -0.176 OAF GP5 39 GP5 OBD OBD O 0 1 N N N 23.290 -4.001 -8.213 -6.530 1.553 -0.962 OBD GP5 40 GP5 CAV CAV C 0 1 N N N 22.637 -3.014 -9.055 -7.514 1.896 0.016 CAV GP5 41 GP5 CBZ CBZ C 0 1 N N R 22.729 -3.467 -10.518 -8.903 1.525 -0.507 CBZ GP5 42 GP5 OBF OBF O 0 1 N N N 24.120 -3.571 -10.904 -9.018 0.096 -0.619 OBF GP5 43 GP5 CBV CBV C 0 1 N N S 22.162 -4.894 -10.562 -9.981 1.997 0.489 CBV GP5 44 GP5 OAL OAL O 0 1 N N N 21.391 -5.021 -11.745 -10.874 2.923 -0.133 OAL GP5 45 GP5 CBW CBW C 0 1 N N R 23.390 -5.799 -10.618 -10.732 0.696 0.876 CBW GP5 46 GP5 OAM OAM O 0 1 N N N 23.090 -6.979 -11.382 -12.140 0.924 0.951 OAM GP5 47 GP5 CXB CXB C 0 1 N N R 24.403 -4.905 -11.334 -10.386 -0.243 -0.308 CXB GP5 48 GP5 NBY NBY N 0 1 Y N N 25.813 -5.157 -10.966 -10.491 -1.648 0.095 NBY GP5 49 GP5 CAT CAT C 0 1 Y N N 26.298 -5.433 -9.741 -9.488 -2.416 0.610 CAT GP5 50 GP5 NAX NAX N 0 1 Y N N 27.616 -5.586 -9.821 -9.932 -3.614 0.856 NAX GP5 51 GP5 CBP CBP C 0 1 Y N N 27.975 -5.403 -11.093 -11.242 -3.685 0.516 CBP GP5 52 GP5 CBR CBR C 0 1 Y N N 26.823 -5.113 -11.819 -11.614 -2.427 0.031 CBR GP5 53 GP5 NAZ NAZ N 0 1 N N N 26.861 -4.871 -13.150 -12.869 -2.221 -0.385 NAZ GP5 54 GP5 CBL CBL C 0 1 N N N 28.031 -4.899 -13.805 -13.767 -3.180 -0.337 CBL GP5 55 GP5 NAB NAB N 0 1 N N N 28.076 -4.666 -15.111 -15.043 -2.921 -0.770 NAB GP5 56 GP5 NBB NBB N 0 1 N N N 29.219 -5.177 -13.117 -13.466 -4.425 0.130 NBB GP5 57 GP5 CBN CBN C 0 1 N N N 29.198 -5.426 -11.752 -12.218 -4.709 0.562 CBN GP5 58 GP5 OAD OAD O 0 1 N N N 30.253 -5.665 -11.172 -11.939 -5.819 0.982 OAD GP5 59 GP5 HN1 HN1 H 0 1 N N N 10.887 7.665 2.292 14.418 -4.793 -0.634 HN1 GP5 60 GP5 HN21 1HN2 H 0 0 N N N 12.431 7.900 4.194 15.446 -1.454 -0.884 HN21 GP5 61 GP5 HN22 2HN2 H 0 0 N N N 14.060 7.931 3.841 15.956 -3.055 -0.919 HN22 GP5 62 GP5 H8 H8 H 0 1 N N N 13.547 2.482 -0.638 8.532 -2.271 0.251 H8 GP5 63 GP5 "H1'" H1* H 0 1 N N N 15.419 2.481 1.449 11.085 0.320 -0.833 "H1'" GP5 64 GP5 "H2'" H2* H 0 1 N N N 16.366 5.247 2.070 10.249 -0.206 2.072 "H2'" GP5 65 GP5 H2 H2 H 0 1 N N N 17.206 3.937 3.724 12.105 1.160 2.382 H2 GP5 66 GP5 "H3'" H3* H 0 1 N N N 18.559 4.705 1.153 9.317 1.951 2.182 "H3'" GP5 67 GP5 H1 H1 H 0 1 N N N 19.266 2.517 1.241 11.314 2.966 1.706 H1 GP5 68 GP5 "H4'" H4* H 0 1 N N N 17.733 2.450 -0.479 9.036 2.284 -0.704 "H4'" GP5 69 GP5 "H5'1" 1H5* H 0 0 N N N 18.650 5.141 -1.014 7.197 0.944 1.333 "H5'1" GP5 70 GP5 "H5'2" 2H5* H 0 0 N N N 17.097 5.158 -1.697 7.305 2.702 1.080 "H5'2" GP5 71 GP5 HAE HAE H 0 1 N N N 16.728 3.799 -5.565 5.005 3.903 -0.019 HAE GP5 72 GP5 HAG HAG H 0 1 N N N 21.013 1.519 -2.100 2.560 -0.738 -0.374 HAG GP5 73 GP5 HAI HAI H 0 1 N N N 19.537 -0.204 -7.537 -0.030 3.894 -0.990 HAI GP5 74 GP5 HAH HAH H 0 1 N N N 23.818 -1.380 -3.946 -2.565 -0.653 -0.257 HAH GP5 75 GP5 HAF HAF H 0 1 N N N 20.982 -5.518 -7.271 -5.157 3.951 -1.056 HAF GP5 76 GP5 HAV1 1HAV H 0 0 N N N 23.045 -1.988 -8.902 -7.315 1.351 0.938 HAV1 GP5 77 GP5 HAV2 2HAV H 0 0 N N N 21.587 -2.813 -8.738 -7.474 2.968 0.211 HAV2 GP5 78 GP5 HBZ HBZ H 0 1 N N N 22.191 -2.753 -11.184 -9.069 1.987 -1.480 HBZ GP5 79 GP5 HBV HBV H 0 1 N N N 21.512 -5.148 -9.692 -9.518 2.446 1.367 HBV GP5 80 GP5 HAL HAL H 0 1 N N N 21.040 -5.903 -11.772 -11.557 3.134 0.519 HAL GP5 81 GP5 HBW HBW H 0 1 N N N 23.750 -6.165 -9.628 -10.354 0.292 1.815 HBW GP5 82 GP5 HAM HAM H 0 1 N N N 23.854 -7.542 -11.417 -12.288 1.512 1.704 HAM GP5 83 GP5 HXB HXB H 0 1 N N N 24.303 -5.096 -12.428 -11.035 -0.040 -1.161 HXB GP5 84 GP5 HAT HAT H 0 1 N N N 25.706 -5.520 -8.814 -8.476 -2.081 0.786 HAT GP5 85 GP5 HAB1 1HAB H 0 0 N N N 27.630 -3.767 -15.291 -15.716 -3.619 -0.742 HAB1 GP5 86 GP5 HAB2 2HAB H 0 0 N N N 28.966 -4.687 -15.609 -15.272 -2.040 -1.105 HAB2 GP5 87 GP5 HBB HBB H 0 1 N N N 30.109 -5.198 -13.615 -14.152 -5.111 0.151 HBB GP5 88 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GP5 O6 C6 DOUB N N 1 GP5 C6 N1 SING N N 2 GP5 C6 C5 SING N N 3 GP5 N1 C2 SING N N 4 GP5 N1 HN1 SING N N 5 GP5 C2 N2 SING N N 6 GP5 C2 N3 DOUB N N 7 GP5 N2 HN21 SING N N 8 GP5 N2 HN22 SING N N 9 GP5 N3 C4 SING N N 10 GP5 C4 C5 DOUB Y N 11 GP5 C4 N9 SING Y N 12 GP5 C5 N7 SING Y N 13 GP5 N7 C8 DOUB Y N 14 GP5 C8 N9 SING Y N 15 GP5 C8 H8 SING N N 16 GP5 N9 "C1'" SING N N 17 GP5 "C1'" "O4'" SING N N 18 GP5 "C1'" "C2'" SING N N 19 GP5 "C1'" "H1'" SING N N 20 GP5 "O4'" "C4'" SING N N 21 GP5 "C2'" "O2'" SING N N 22 GP5 "C2'" "C3'" SING N N 23 GP5 "C2'" "H2'" SING N N 24 GP5 "O2'" H2 SING N N 25 GP5 "C3'" "O3'" SING N N 26 GP5 "C3'" "C4'" SING N N 27 GP5 "C3'" "H3'" SING N N 28 GP5 "O3'" H1 SING N N 29 GP5 "C4'" "C5'" SING N N 30 GP5 "C4'" "H4'" SING N N 31 GP5 "C5'" "O5'" SING N N 32 GP5 "C5'" "H5'1" SING N N 33 GP5 "C5'" "H5'2" SING N N 34 GP5 "O5'" PCC SING N N 35 GP5 PCC OAN DOUB N N 36 GP5 PCC OAE SING N N 37 GP5 PCC OBG SING N N 38 GP5 OAE HAE SING N N 39 GP5 OBG PCE SING N N 40 GP5 PCE OAP DOUB N N 41 GP5 PCE OAG SING N N 42 GP5 PCE OBI SING N N 43 GP5 OAG HAG SING N N 44 GP5 OBI PCG SING N N 45 GP5 PCG OAR DOUB N N 46 GP5 PCG OAI SING N N 47 GP5 PCG OBJ SING N N 48 GP5 OAI HAI SING N N 49 GP5 OBJ PCF SING N N 50 GP5 PCF OAQ DOUB N N 51 GP5 PCF OAH SING N N 52 GP5 PCF OBH SING N N 53 GP5 OAH HAH SING N N 54 GP5 OBH PCD SING N N 55 GP5 PCD OAO DOUB N N 56 GP5 PCD OAF SING N N 57 GP5 PCD OBD SING N N 58 GP5 OAF HAF SING N N 59 GP5 OBD CAV SING N N 60 GP5 CAV CBZ SING N N 61 GP5 CAV HAV1 SING N N 62 GP5 CAV HAV2 SING N N 63 GP5 CBZ OBF SING N N 64 GP5 CBZ CBV SING N N 65 GP5 CBZ HBZ SING N N 66 GP5 OBF CXB SING N N 67 GP5 CBV OAL SING N N 68 GP5 CBV CBW SING N N 69 GP5 CBV HBV SING N N 70 GP5 OAL HAL SING N N 71 GP5 CBW OAM SING N N 72 GP5 CBW CXB SING N N 73 GP5 CBW HBW SING N N 74 GP5 OAM HAM SING N N 75 GP5 CXB NBY SING N N 76 GP5 CXB HXB SING N N 77 GP5 NBY CAT SING Y N 78 GP5 NBY CBR SING Y N 79 GP5 CAT NAX DOUB Y N 80 GP5 CAT HAT SING N N 81 GP5 NAX CBP SING Y N 82 GP5 CBP CBR DOUB Y N 83 GP5 CBP CBN SING N N 84 GP5 CBR NAZ SING N N 85 GP5 NAZ CBL DOUB N N 86 GP5 CBL NAB SING N N 87 GP5 CBL NBB SING N N 88 GP5 NAB HAB1 SING N N 89 GP5 NAB HAB2 SING N N 90 GP5 NBB CBN SING N N 91 GP5 NBB HBB SING N N 92 GP5 CBN OAD DOUB N N 93 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GP5 SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3O[C@@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P@](O)(=O)O[P@@](O)(=O)O[P@](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6C(=O)NC(=Nc56)N)[C@H](O)[C@@H]3O" GP5 SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6C(=O)NC(=Nc56)N)[CH](O)[CH]3O" GP5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@@H]3[C@H]([C@H]([C@@H](O3)CO[P@@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5N=C(NC6=O)N)O)O)O)O)N=C(NC2=O)N" GP5 SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5N=C(NC6=O)N)O)O)O)O)N=C(NC2=O)N" GP5 InChI InChI 1.03 ;InChI=1S/C20H29N10O24P5/c21-19-25-13-7(15(35)27-19)23-3-29(13)17-11(33)9(31)5(49-17)1-47-55(37,38)51-57(41,42)53-59(45,46)54-58(43,44)52-56(39,40)48-2-6-10(32)12(34)18(50-6)30-4-24-8-14(30)26-20(22)28-16(8)36/h3-6,9-12,17-18,31-34H,1-2H2,(H,37,38)(H,39,40)(H,41,42)(H,43,44)(H,45,46)(H3,21,25,27,35)(H3,22,26,28,36)/t5-,6+,9-,10+,11-,12+,17-,18+ ; GP5 InChIKey InChI 1.03 RELSGTOCAPVUGP-DTFXMBEISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GP5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 ;[[[[[(2S,3R,4S,5S)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl] [(2S,3R,4S,5S)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl hydrogen phosphate ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GP5 "Create component" 2005-11-09 RCSB GP5 "Modify descriptor" 2011-06-04 RCSB #