data_GPC # _chem_comp.id GPC _chem_comp.name "2'-FLUOROGUANYLYL-(3'-5')-PHOSPHOCYTIDINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H24 F N8 O11 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 590.413 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GPC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye OEToolkits" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1RDS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GPC N1G GN1 N 0 1 N N N 26.275 37.320 33.197 -3.215 4.480 4.916 N1G GPC 1 GPC C2G GC2 C 0 1 N N N 27.383 38.106 33.276 -2.486 4.693 3.723 C2G GPC 2 GPC N2G GN2 N 0 1 N N N 27.408 38.983 34.275 -2.377 6.001 3.327 N2G GPC 3 GPC N3G GN3 N 0 1 N N N 28.355 37.939 32.372 -1.947 3.709 3.035 N3G GPC 4 GPC C4G GC4 C 0 1 Y N N 28.217 36.988 31.399 -2.165 2.496 3.589 C4G GPC 5 GPC C5G GC5 C 0 1 Y N N 27.079 36.174 31.300 -2.853 2.179 4.736 C5G GPC 6 GPC C6G GC6 C 0 1 N N N 26.058 36.316 32.270 -3.453 3.231 5.508 C6G GPC 7 GPC O6G GO6 O 0 1 N N N 24.970 35.774 32.406 -4.083 3.044 6.540 O6G GPC 8 GPC N7G GN7 N 0 1 Y N N 27.216 35.337 30.249 -2.858 0.837 4.975 N7G GPC 9 GPC C8G GC8 C 0 1 Y N N 28.414 35.598 29.655 -2.171 0.332 3.970 C8G GPC 10 GPC N9G GN9 N 0 1 Y N N 29.021 36.613 30.350 -1.728 1.299 3.100 N9G GPC 11 GPC C1D GC1* C 0 1 N N R 30.361 37.192 30.044 -0.941 1.072 1.889 C1D GPC 12 GPC C2D GC2* C 0 1 N N R 30.266 38.609 29.489 0.562 1.028 2.128 C2D GPC 13 GPC F2D GF2* F 0 1 N N N 30.809 38.687 28.212 1.168 1.620 1.058 F2D GPC 14 GPC C3D GC3* C 0 1 N N R 30.873 39.414 30.601 0.868 -0.451 2.108 C3D GPC 15 GPC O3D GO3* O 0 1 N N N 31.759 40.469 30.051 2.206 -0.725 1.750 O3D GPC 16 GPC C4D GC4* C 0 1 N N R 31.718 38.412 31.393 -0.116 -0.946 1.064 C4D GPC 17 GPC O4D GO4* O 0 1 N N N 31.040 37.197 31.293 -1.316 -0.188 1.294 O4D GPC 18 GPC C5D GC5* C 0 1 N N N 31.683 38.844 32.867 -0.416 -2.431 1.168 C5D GPC 19 GPC O5D GO5* O 0 1 N N N 32.474 38.056 33.727 -1.349 -2.782 0.160 O5D GPC 20 GPC PC CP P 0 1 N N S 31.101 41.893 29.823 3.420 -0.145 2.650 PC GPC 21 GPC O1C CO1 O 0 1 N N N 30.901 42.148 28.397 3.417 -0.604 4.080 O1C GPC 22 GPC O2C CO2 O 0 1 N N N 29.851 41.882 30.633 4.753 -0.555 1.828 O2C GPC 23 GPC O5B CO5* O 0 1 N N N 32.063 42.925 30.508 3.351 1.462 2.458 O5B GPC 24 GPC C5X CC5* C 0 1 N N N 33.444 43.126 30.080 4.385 2.253 3.015 C5X GPC 25 GPC C4X CC4* C 0 1 N N R 33.750 44.635 30.192 4.099 3.717 2.705 C4X GPC 26 GPC O4B CO4* O 0 1 N N N 32.824 45.283 31.040 2.854 4.077 3.343 O4B GPC 27 GPC C3X CC3* C 0 1 N N S 35.153 45.045 30.568 5.147 4.667 3.269 C3X GPC 28 GPC O3B CO3* O 0 1 N N N 35.870 45.856 29.633 5.105 5.872 2.504 O3B GPC 29 GPC C2X CC2* C 0 1 N N R 34.928 45.916 31.766 4.629 4.916 4.670 C2X GPC 30 GPC O2B CO2* O 0 1 N N N 35.965 46.901 31.791 5.127 6.117 5.221 O2B GPC 31 GPC C1X CC1* C 0 1 N N R 33.508 46.460 31.504 3.127 4.953 4.448 C1X GPC 32 GPC N1C CN1 N 0 1 N N N 32.943 46.841 32.841 2.392 4.500 5.595 N1C GPC 33 GPC CC2 CC2 C 0 1 N N N 32.592 48.142 33.139 1.895 5.399 6.572 CC2 GPC 34 GPC O2X "CO2'" O 0 1 N N N 32.684 49.083 32.375 2.080 6.613 6.469 O2X GPC 35 GPC N3C CN3 N 0 1 N N N 32.091 48.360 34.404 1.194 4.890 7.653 N3C GPC 36 GPC CC4 CC4 C 0 1 N N N 31.975 47.390 35.333 0.989 3.606 7.780 CC4 GPC 37 GPC N4C CN4 N 0 1 N N N 31.473 47.686 36.540 0.290 3.121 8.862 N4C GPC 38 GPC CC5 CC5 C 0 1 N N N 32.337 46.094 35.043 1.494 2.632 6.777 CC5 GPC 39 GPC CC6 CC6 C 0 1 N N N 32.832 45.818 33.770 2.165 3.141 5.745 CC6 GPC 40 GPC H1G GH1 H 0 1 N N N 25.548 37.498 33.889 -3.597 5.298 5.383 H1G GPC 41 GPC H21G GH21 H 0 0 N N N 27.263 38.501 35.162 -2.228 6.190 2.363 H21G GPC 42 GPC H22G GH22 H 0 0 N N N 28.239 39.572 34.334 -2.452 6.710 4.019 H22G GPC 43 GPC H8G GH8 H 0 1 N N N 28.820 35.080 28.770 -1.961 -0.718 3.816 H8G GPC 44 GPC H1D GH1* H 0 1 N N N 30.887 36.599 29.260 -1.222 1.877 1.203 H1D GPC 45 GPC H2D GH2* H 0 1 N N N 29.249 39.009 29.268 0.908 1.544 3.028 H2D GPC 46 GPC H3D GH3* H 0 1 N N N 30.095 39.915 31.222 0.656 -0.893 3.088 H3D GPC 47 GPC H4D GH4* H 0 1 N N N 32.769 38.348 31.026 0.238 -0.732 0.048 H4D GPC 48 GPC H51G GH51 H 0 0 N N N 30.631 38.883 33.235 -0.845 -2.663 2.146 H51G GPC 49 GPC H52G GH52 H 0 0 N N N 31.960 39.920 32.963 0.498 -3.013 1.026 H52G GPC 50 GPC HO5G GHO5 H 0 0 N N N 32.452 38.323 34.638 -1.828 -3.566 0.477 HO5G GPC 51 GPC HOC2 2HOC H 0 0 N N N 30.072 41.880 31.557 5.096 -1.470 1.908 HOC2 GPC 52 GPC H51C CH51 H 0 0 N N N 33.648 42.715 29.064 4.414 2.098 4.094 H51C GPC 53 GPC H52C CH52 H 0 0 N N N 34.170 42.493 30.642 5.339 1.957 2.577 H52C GPC 54 GPC H4B CH4* H 0 1 N N N 33.647 44.972 29.134 3.967 3.840 1.626 H4B GPC 55 GPC H3B CH3* H 0 1 N N N 35.764 44.119 30.677 6.170 4.285 3.235 H3B GPC 56 GPC HO3C CHO3 H 0 0 N N N 36.753 46.114 29.870 4.274 5.851 2.006 HO3C GPC 57 GPC H2B CH2* H 0 1 N N N 34.976 45.432 32.769 4.910 4.085 5.328 H2B GPC 58 GPC HO2C CHO2 H 0 0 N N N 35.822 47.453 32.551 4.619 6.295 6.031 HO2C GPC 59 GPC H1B CH1* H 0 1 N N N 33.444 47.327 30.806 2.763 5.956 4.203 H1B GPC 60 GPC H41C CH41 H 0 0 N N N 30.561 48.126 36.414 0.807 2.811 9.649 H41C GPC 61 GPC H42C CH42 H 0 0 N N N 31.385 46.952 37.243 -0.699 3.104 8.807 H42C GPC 62 GPC H5C CH5 H 0 1 N N N 32.234 45.303 35.805 1.313 1.573 6.900 H5C GPC 63 GPC H6C CH6 H 0 1 N N N 33.135 44.793 33.499 2.568 2.501 4.968 H6C GPC 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GPC N1G C2G SING N N 1 GPC N1G C6G SING N N 2 GPC N1G H1G SING N N 3 GPC C2G N2G SING N N 4 GPC C2G N3G DOUB N N 5 GPC N2G H21G SING N N 6 GPC N2G H22G SING N N 7 GPC N3G C4G SING N N 8 GPC C4G C5G DOUB Y N 9 GPC C4G N9G SING Y N 10 GPC C5G C6G SING N N 11 GPC C5G N7G SING Y N 12 GPC C6G O6G DOUB N N 13 GPC N7G C8G DOUB Y N 14 GPC C8G N9G SING Y N 15 GPC C8G H8G SING N N 16 GPC N9G C1D SING N N 17 GPC C1D C2D SING N N 18 GPC C1D O4D SING N N 19 GPC C1D H1D SING N N 20 GPC C2D F2D SING N N 21 GPC C2D C3D SING N N 22 GPC C2D H2D SING N N 23 GPC C3D O3D SING N N 24 GPC C3D C4D SING N N 25 GPC C3D H3D SING N N 26 GPC O3D PC SING N N 27 GPC C4D O4D SING N N 28 GPC C4D C5D SING N N 29 GPC C4D H4D SING N N 30 GPC C5D O5D SING N N 31 GPC C5D H51G SING N N 32 GPC C5D H52G SING N N 33 GPC O5D HO5G SING N N 34 GPC PC O1C DOUB N N 35 GPC PC O2C SING N N 36 GPC PC O5B SING N N 37 GPC O2C HOC2 SING N N 38 GPC O5B C5X SING N N 39 GPC C5X C4X SING N N 40 GPC C5X H51C SING N N 41 GPC C5X H52C SING N N 42 GPC C4X O4B SING N N 43 GPC C4X C3X SING N N 44 GPC C4X H4B SING N N 45 GPC O4B C1X SING N N 46 GPC C3X O3B SING N N 47 GPC C3X C2X SING N N 48 GPC C3X H3B SING N N 49 GPC O3B HO3C SING N N 50 GPC C2X O2B SING N N 51 GPC C2X C1X SING N N 52 GPC C2X H2B SING N N 53 GPC O2B HO2C SING N N 54 GPC C1X N1C SING N N 55 GPC C1X H1B SING N N 56 GPC N1C CC2 SING N N 57 GPC N1C CC6 SING N N 58 GPC CC2 O2X DOUB N N 59 GPC CC2 N3C SING N N 60 GPC N3C CC4 DOUB N N 61 GPC CC4 N4C SING N N 62 GPC CC4 CC5 SING N N 63 GPC N4C H41C SING N N 64 GPC N4C H42C SING N N 65 GPC CC5 CC6 DOUB N N 66 GPC CC5 H5C SING N N 67 GPC CC6 H6C SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GPC SMILES ACDLabs 10.04 "O=C5NC(=Nc1c5ncn1C4OC(CO)C(OP(=O)(O)OCC3OC(N2C(=O)N=C(N)C=C2)C(O)C3O)C4F)N" GPC SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO)[C@@H](O[P@](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)N5C=CC(=NC5=O)N)[C@H]3F" GPC SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO)[CH](O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)N5C=CC(=NC5=O)N)[CH]3F" GPC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5C=CC(=NC5=O)N)O)O)F)N=C(NC2=O)N" GPC SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)CO)OP(=O)(O)OCC4C(C(C(O4)N5C=CC(=NC5=O)N)O)O)F)N=C(NC2=O)N" GPC InChI InChI 1.03 ;InChI=1S/C19H24FN8O11P/c20-9-13(6(3-29)37-16(9)28-5-23-10-14(28)25-18(22)26-15(10)32)39-40(34,35)36-4-7-11(30)12(31)17(38-7)27-2-1-8(21)24-19(27)33/h1-2,5-7,9,11-13,16-17,29-31H,3-4H2,(H,34,35)(H2,21,24,33)(H3,22,25,26,32)/t6-,7-,9-,11-,12-,13-,16-,17-/m1/s1 ; GPC InChIKey InChI 1.03 ZSBUMMSBXYRQAK-FOJQSULLSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GPC "SYSTEMATIC NAME" ACDLabs 10.04 "(2R,3R,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-4-fluoro-2-(hydroxymethyl)tetrahydrofuran-3-yl [(2R,3S,4R,5R)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl hydrogen (S)-phosphate (non-preferred name)" GPC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-4-fluoro-2-(hydroxymethyl)oxolan-3-yl] [(2R,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GPC "Create component" 1999-07-08 EBI GPC "Modify descriptor" 2011-06-04 RCSB #