data_GPN # _chem_comp.id GPN _chem_comp.name 2-AMINOETHYLGLYCINE-CARBONYLMETHYLENE-GUANINE _chem_comp.type PEPTIDE-LIKE _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H16 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 310.289 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GPN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 176D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GPN "C8'" "C8'" C 0 1 N N N N N N 1.212 10.267 -7.999 -0.404 -0.269 -1.163 "C8'" GPN 1 GPN "C7'" "C7'" C 0 1 N N N N N N 2.290 10.719 -6.991 -1.259 0.223 -0.023 "C7'" GPN 2 GPN "O7'" "O7'" O 0 1 N N N N N N 3.155 9.897 -6.686 -0.812 1.026 0.767 "O7'" GPN 3 GPN "C5'" "C5'" C 0 1 N N N Y N N 3.430 12.443 -5.652 -3.352 0.247 1.224 "C5'" GPN 4 GPN C "C'" C 0 1 N N N Y N Y 3.057 12.625 -4.174 -4.110 1.475 0.790 "C'" GPN 5 GPN O "O1'" O 0 1 N N N Y N Y 2.600 13.696 -3.776 -3.970 1.907 -0.330 "O1'" GPN 6 GPN OXT OXT O 0 1 N Y N Y N Y 3.258 11.582 -3.359 -4.941 2.089 1.647 OXT GPN 7 GPN "N4'" "N4'" N 0 1 N N N Y N N 2.305 11.984 -6.493 -2.521 -0.231 0.117 "N4'" GPN 8 GPN "C3'" "C3'" C 0 1 N N N Y N N 1.236 12.981 -6.707 -3.061 -1.202 -0.838 "C3'" GPN 9 GPN "C2'" "C2'" C 0 1 N N N Y N N 1.599 14.030 -7.776 -2.768 -2.620 -0.344 "C2'" GPN 10 GPN N "N1'" N 1 1 N N N Y Y N 1.795 13.426 -9.102 -3.310 -3.593 -1.302 "N1'" GPN 11 GPN N9 N9 N 0 1 Y N N N N N 0.243 9.257 -7.488 0.913 0.368 -1.095 N9 GPN 12 GPN C8 C8 C 0 1 Y N N N N N -0.327 8.234 -8.206 1.301 1.493 -1.764 C8 GPN 13 GPN N7 N7 N 0 1 Y N N N N N -1.197 7.523 -7.547 2.536 1.778 -1.470 N7 GPN 14 GPN C5 C5 C 0 1 Y N N N N N -1.209 8.097 -6.278 3.013 0.856 -0.597 C5 GPN 15 GPN C6 C6 C 0 1 N N N N N N -1.961 7.740 -5.096 4.255 0.664 0.051 C6 GPN 16 GPN O6 O6 O 0 1 N N N N N N -2.801 6.849 -4.958 5.183 1.433 -0.135 O6 GPN 17 GPN N1 N1 N 0 1 N N N N N N -1.652 8.536 -3.986 4.388 -0.393 0.883 N1 GPN 18 GPN C2 C2 C 0 1 N N N N N N -0.791 9.624 -4.044 3.344 -1.246 1.085 C2 GPN 19 GPN N2 N2 N 0 1 N N N N N N -0.641 10.322 -2.921 3.508 -2.310 1.936 N2 GPN 20 GPN N3 N3 N 0 1 N N N N N N -0.117 9.989 -5.156 2.185 -1.078 0.488 N3 GPN 21 GPN C4 C4 C 0 1 Y N N N N N -0.341 9.176 -6.238 1.978 -0.051 -0.345 C4 GPN 22 GPN "H8'1" "H8'1" H 0 0 N N N N N N 0.638 11.158 -8.293 -0.289 -1.350 -1.090 "H8'1" GPN 23 GPN "H8'2" "H8'2" H 0 0 N N N N N N 1.730 9.823 -8.862 -0.881 -0.017 -2.110 "H8'2" GPN 24 GPN "H5'1" "H5'1" H 0 0 N N N Y N N 3.774 13.413 -6.040 -2.717 0.494 2.075 "H5'1" GPN 25 GPN "H5'2" "H5'2" H 0 0 N N N Y N N 4.231 11.692 -5.713 -4.057 -0.533 1.512 "H5'2" GPN 26 GPN HXT HXT H 0 1 N Y N Y N Y 2.997 11.815 -2.476 -5.405 2.873 1.323 HXT GPN 27 GPN "H3'1" "H3'1" H 0 0 N N N Y N N 0.330 12.451 -7.036 -4.138 -1.063 -0.928 "H3'1" GPN 28 GPN "H3'2" "H3'2" H 0 0 N N N Y N N 1.055 13.504 -5.756 -2.593 -1.052 -1.812 "H3'2" GPN 29 GPN "H2'1" "H2'1" H 0 0 N N N Y N N 0.780 14.761 -7.842 -1.691 -2.759 -0.255 "H2'1" GPN 30 GPN "H2'2" "H2'2" H 0 0 N N N Y N N 2.533 14.528 -7.476 -3.236 -2.769 0.629 "H2'2" GPN 31 GPN H "H1'1" H 0 0 N N N Y Y N 2.028 14.140 -9.763 -3.117 -4.529 -0.976 "H1'1" GPN 32 GPN H2 "H1'2" H 0 0 N Y N Y Y N 2.538 12.758 -9.057 -4.307 -3.465 -1.385 "H1'2" GPN 33 GPN H3 "H1'3" H 0 0 N Y N Y Y N 0.953 12.969 -9.388 -2.877 -3.455 -2.203 "H1'3" GPN 34 GPN H8 H8 H 0 1 N N N N N N -0.074 8.035 -9.237 0.676 2.062 -2.437 H8 GPN 35 GPN HN1 HN1 H 0 1 N N N N N N -2.073 8.310 -3.107 5.231 -0.545 1.339 HN1 GPN 36 GPN HN21 HN21 H 0 0 N N N N N N -0.031 11.114 -2.902 4.357 -2.447 2.383 HN21 GPN 37 GPN HN22 HN22 H 0 0 N N N N N N -1.139 10.055 -2.096 2.774 -2.925 2.089 HN22 GPN 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GPN "C8'" "C7'" SING N N 1 GPN "C8'" N9 SING N N 2 GPN "C8'" "H8'1" SING N N 3 GPN "C8'" "H8'2" SING N N 4 GPN "C7'" "O7'" DOUB N N 5 GPN "C7'" "N4'" SING N N 6 GPN "C5'" C SING N N 7 GPN "C5'" "N4'" SING N N 8 GPN "C5'" "H5'1" SING N N 9 GPN "C5'" "H5'2" SING N N 10 GPN C O DOUB N N 11 GPN C OXT SING N N 12 GPN OXT HXT SING N N 13 GPN "N4'" "C3'" SING N N 14 GPN "C3'" "C2'" SING N N 15 GPN "C3'" "H3'1" SING N N 16 GPN "C3'" "H3'2" SING N N 17 GPN "C2'" N SING N N 18 GPN "C2'" "H2'1" SING N N 19 GPN "C2'" "H2'2" SING N N 20 GPN N H SING N N 21 GPN N H2 SING N N 22 GPN N H3 SING N N 23 GPN N9 C8 SING Y N 24 GPN N9 C4 SING Y N 25 GPN C8 N7 DOUB Y N 26 GPN C8 H8 SING N N 27 GPN N7 C5 SING Y N 28 GPN C5 C6 SING N N 29 GPN C5 C4 DOUB Y N 30 GPN C6 O6 DOUB N N 31 GPN C6 N1 SING N N 32 GPN N1 C2 SING N N 33 GPN N1 HN1 SING N N 34 GPN C2 N2 SING N N 35 GPN C2 N3 DOUB N N 36 GPN N2 HN21 SING N N 37 GPN N2 HN22 SING N N 38 GPN N3 C4 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GPN SMILES ACDLabs 12.01 "O=C(O)CN(C(=O)Cn1c2N=C(NC(=O)c2nc1)N)CC[NH3+]" GPN SMILES_CANONICAL CACTVS 3.370 "NC1=Nc2n(CC(=O)N(CC[NH3+])CC(O)=O)cnc2C(=O)N1" GPN SMILES CACTVS 3.370 "NC1=Nc2n(CC(=O)N(CC[NH3+])CC(O)=O)cnc2C(=O)N1" GPN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1CC(=O)N(CC[NH3+])CC(=O)O)N=C(NC2=O)N" GPN SMILES "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1CC(=O)N(CC[NH3+])CC(=O)O)N=C(NC2=O)N" GPN InChI InChI 1.03 "InChI=1S/C11H15N7O4/c12-1-2-17(4-7(20)21)6(19)3-18-5-14-8-9(18)15-11(13)16-10(8)22/h5H,1-4,12H2,(H,20,21)(H3,13,15,16,22)/p+1" GPN InChIKey InChI 1.03 WYRWRGIGYVLOGE-UHFFFAOYSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GPN "SYSTEMATIC NAME" ACDLabs 12.01 "2-{[(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)acetyl](carboxymethyl)amino}ethanaminium" GPN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "2-[2-(2-azanyl-6-oxo-1H-purin-9-yl)ethanoyl-(carboxymethyl)amino]ethylazanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GPN "Create component" 1999-07-08 RCSB GPN "Modify descriptor" 2011-06-04 RCSB GPN "Modify backbone" 2023-11-03 PDBE #