data_GPP # _chem_comp.id GPP _chem_comp.name "GERANYL DIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H20 O7 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 314.209 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GPP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1UBW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GPP C1 C1 C 0 1 N N N 5.120 30.752 102.497 -1.227 -0.507 0.252 C1 GPP 1 GPP O1 O1 O 0 1 N N N 5.219 30.985 103.892 0.034 -0.525 -0.417 O1 GPP 2 GPP C2 C2 C 0 1 N N N 4.125 31.651 101.806 -1.025 -0.816 1.713 C2 GPP 3 GPP C3 C3 C 0 1 N N N 4.348 32.118 100.567 -1.641 -0.105 2.624 C3 GPP 4 GPP C4 C4 C 0 1 N N N 5.648 31.678 99.905 -2.649 0.936 2.213 C4 GPP 5 GPP C5 C5 C 0 1 N N N 3.288 32.981 99.861 -1.343 -0.329 4.084 C5 GPP 6 GPP C6 C6 C 0 1 N N N 2.749 34.301 100.405 -0.193 0.583 4.516 C6 GPP 7 GPP C7 C7 C 0 1 N N N 1.676 34.850 99.500 0.105 0.358 5.976 C7 GPP 8 GPP C8 C8 C 0 1 N N N 1.225 36.083 99.738 1.321 0.058 6.357 C8 GPP 9 GPP C9 C9 C 0 1 N N N 1.876 36.794 100.920 1.596 -0.290 7.797 C9 GPP 10 GPP C10 C10 C 0 1 N N N 0.128 36.582 98.775 2.447 0.061 5.355 C10 GPP 11 GPP PA PA P 0 1 N N R 4.873 29.997 105.146 -0.255 -0.188 -1.965 PA GPP 12 GPP O1A O1A O 0 1 N N N 3.475 30.526 105.838 -1.164 -1.210 -2.530 O1A GPP 13 GPP O2A O2A O 0 1 N N N 4.905 28.440 104.891 -0.941 1.263 -2.079 O2A GPP 14 GPP O3A O3A O 0 1 N N N 6.001 30.215 106.201 1.131 -0.192 -2.783 O3A GPP 15 GPP PB PB P 0 1 N N N 7.497 29.863 105.940 0.768 0.149 -4.314 PB GPP 16 GPP O1B O1B O 0 1 N N N 8.784 29.528 105.032 0.121 1.479 -4.383 O1B GPP 17 GPP O2B O2B O 0 1 N N N 7.912 31.325 106.399 2.116 0.162 -5.195 O2B GPP 18 GPP O3B O3B O 0 1 N N N 7.866 28.809 107.077 -0.237 -0.967 -4.890 O3B GPP 19 GPP H11 1H1 H 0 1 N N N 6.121 30.825 102.012 -1.884 -1.255 -0.190 H11 GPP 20 GPP H12 2H1 H 0 1 N N N 4.892 29.680 102.291 -1.679 0.479 0.149 H12 GPP 21 GPP H2 H2 H 0 1 N N N 3.167 31.990 102.236 -0.372 -1.624 2.008 H2 GPP 22 GPP H41 1H4 H 0 1 N N N 5.833 32.065 98.876 -3.410 0.477 1.582 H41 GPP 23 GPP H42 2H4 H 0 1 N N N 6.511 31.931 100.564 -3.120 1.357 3.101 H42 GPP 24 GPP H43 3H4 H 0 1 N N N 5.713 30.564 99.905 -2.147 1.728 1.658 H43 GPP 25 GPP H51 1H5 H 0 1 N N N 3.667 33.184 98.832 -1.059 -1.370 4.241 H51 GPP 26 GPP H52 2H5 H 0 1 N N N 2.407 32.323 99.672 -2.229 -0.102 4.676 H52 GPP 27 GPP H61 1H6 H 0 1 N N N 2.391 34.200 101.456 -0.477 1.623 4.359 H61 GPP 28 GPP H62 2H6 H 0 1 N N N 3.564 35.041 100.576 0.693 0.355 3.924 H62 GPP 29 GPP H7 H7 H 0 1 N N N 1.209 34.336 98.642 -0.684 0.446 6.708 H7 GPP 30 GPP H91 1H9 H 0 1 N N N 1.499 37.824 101.118 2.656 -0.510 7.922 H91 GPP 31 GPP H92 2H9 H 0 1 N N N 1.789 36.169 101.839 1.321 0.550 8.433 H92 GPP 32 GPP H93 3H9 H 0 1 N N N 2.984 36.807 100.797 1.008 -1.165 8.077 H93 GPP 33 GPP H101 1H10 H 0 0 N N N -0.248 37.612 98.973 2.487 1.029 4.856 H101 GPP 34 GPP H102 2H10 H 0 0 N N N 0.478 36.499 97.719 3.391 -0.122 5.868 H102 GPP 35 GPP H103 3H10 H 0 0 N N N -0.721 35.860 98.756 2.277 -0.721 4.615 H103 GPP 36 GPP HOA2 2HOA H 0 0 N N N 4.703 27.865 105.620 -0.318 1.898 -1.700 HOA2 GPP 37 GPP HOB2 2HOB H 0 0 N N N 8.823 31.110 106.239 1.855 0.371 -6.102 HOB2 GPP 38 GPP HOB3 3HOB H 0 0 N N N 8.777 28.594 106.917 0.221 -1.816 -4.827 HOB3 GPP 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GPP C1 O1 SING N N 1 GPP C1 C2 SING N N 2 GPP C1 H11 SING N N 3 GPP C1 H12 SING N N 4 GPP O1 PA SING N N 5 GPP C2 C3 DOUB N E 6 GPP C2 H2 SING N N 7 GPP C3 C4 SING N N 8 GPP C3 C5 SING N N 9 GPP C4 H41 SING N N 10 GPP C4 H42 SING N N 11 GPP C4 H43 SING N N 12 GPP C5 C6 SING N N 13 GPP C5 H51 SING N N 14 GPP C5 H52 SING N N 15 GPP C6 C7 SING N N 16 GPP C6 H61 SING N N 17 GPP C6 H62 SING N N 18 GPP C7 C8 DOUB N N 19 GPP C7 H7 SING N N 20 GPP C8 C9 SING N N 21 GPP C8 C10 SING N N 22 GPP C9 H91 SING N N 23 GPP C9 H92 SING N N 24 GPP C9 H93 SING N N 25 GPP C10 H101 SING N N 26 GPP C10 H102 SING N N 27 GPP C10 H103 SING N N 28 GPP PA O1A DOUB N N 29 GPP PA O2A SING N N 30 GPP PA O3A SING N N 31 GPP O2A HOA2 SING N N 32 GPP O3A PB SING N N 33 GPP PB O1B DOUB N N 34 GPP PB O2B SING N N 35 GPP PB O3B SING N N 36 GPP O2B HOB2 SING N N 37 GPP O3B HOB3 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GPP SMILES ACDLabs 10.04 "O=P(OP(=O)(OC/C=C(/CC\C=C(/C)C)C)O)(O)O" GPP SMILES_CANONICAL CACTVS 3.341 "CC(C)=CCCC(/C)=C/CO[P@](O)(=O)O[P](O)(O)=O" GPP SMILES CACTVS 3.341 "CC(C)=CCCC(C)=CCO[P](O)(=O)O[P](O)(O)=O" GPP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=CCC/C(=C/CO[P@@](=O)(O)OP(=O)(O)O)/C)C" GPP SMILES "OpenEye OEToolkits" 1.5.0 "CC(=CCCC(=CCOP(=O)(O)OP(=O)(O)O)C)C" GPP InChI InChI 1.03 "InChI=1S/C10H20O7P2/c1-9(2)5-4-6-10(3)7-8-16-19(14,15)17-18(11,12)13/h5,7H,4,6,8H2,1-3H3,(H,14,15)(H2,11,12,13)/b10-7+" GPP InChIKey InChI 1.03 GVVPGTZRZFNKDS-JXMROGBWSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GPP "SYSTEMATIC NAME" ACDLabs 10.04 "(2E)-3,7-dimethylocta-2,6-dien-1-yl trihydrogen diphosphate" GPP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2E)-3,7-dimethylocta-2,6-dienyl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GPP "Create component" 1999-07-08 RCSB GPP "Modify descriptor" 2011-06-04 RCSB #