data_GPX # _chem_comp.id GPX _chem_comp.name ;GUANOSINE 5'-DIPHOSPHATE 2':3'-CYCLIC MONOPHOSPHATE ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N5 O13 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 505.165 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GPX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1CH8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GPX P1 P1 P 0 1 N N S 2.758 51.660 41.473 3.666 0.168 -2.088 P1 GPX 1 GPX N9 N9 N 0 1 Y N N 3.395 48.178 44.034 -1.062 0.165 -2.510 N9 GPX 2 GPX C8 C8 C 0 1 Y N N 2.736 46.997 44.183 -2.000 1.063 -2.090 C8 GPX 3 GPX N7 N7 N 0 1 Y N N 3.431 46.009 44.670 -2.848 1.296 -3.049 N7 GPX 4 GPX C5 C5 C 0 1 Y N N 4.692 46.586 44.875 -2.506 0.563 -4.137 C5 GPX 5 GPX C6 C6 C 0 1 Y N N 5.844 46.026 45.374 -3.049 0.416 -5.435 C6 GPX 6 GPX O6 O6 O 0 1 N N N 6.037 44.867 45.749 -4.046 1.033 -5.770 O6 GPX 7 GPX N1 N1 N 0 1 Y N N 6.891 46.925 45.419 -2.432 -0.421 -6.298 N1 GPX 8 GPX C2 C2 C 0 1 Y N N 6.779 48.231 45.013 -1.321 -1.110 -5.912 C2 GPX 9 GPX N2 N2 N 0 1 N N N 7.856 49.008 45.086 -0.719 -1.958 -6.807 N2 GPX 10 GPX N3 N3 N 0 1 Y N N 5.678 48.765 44.545 -0.807 -0.982 -4.709 N3 GPX 11 GPX C4 C4 C 0 1 Y N N 4.679 47.895 44.495 -1.360 -0.167 -3.803 C4 GPX 12 GPX O11 O11 O 0 1 N N N 2.515 52.196 40.115 4.244 1.647 -2.359 O11 GPX 13 GPX O21 O21 O 0 1 N N N 3.944 52.332 42.057 4.613 -0.889 -2.506 O21 GPX 14 GPX "O3'" "O3'" O 0 1 N N N 1.472 51.825 42.447 3.245 -0.012 -0.522 "O3'" GPX 15 GPX PA PA P 0 1 N N S -2.507 49.661 44.993 -0.140 -0.028 4.007 PA GPX 16 GPX O1A O1A O 0 1 N N N -3.651 50.598 44.904 -0.640 1.362 3.931 O1A GPX 17 GPX O2A O2A O 0 1 N N N -1.483 50.221 45.897 1.316 -0.037 4.693 O2A GPX 18 GPX O3A O3A O 0 1 N N N -2.909 48.189 45.527 -1.154 -0.915 4.889 O3A GPX 19 GPX "O5'" "O5'" O 0 1 N N N -1.774 49.318 43.592 -0.038 -0.644 2.523 "O5'" GPX 20 GPX PB PB P 0 1 N N N -4.310 47.439 45.314 -1.207 -0.246 6.352 PB GPX 21 GPX O1B O1B O 0 1 N N N -4.422 46.613 44.079 -1.691 1.147 6.239 O1B GPX 22 GPX O2B O2B O 0 1 N N N -5.364 48.475 45.316 -2.208 -1.087 7.291 O2B GPX 23 GPX O3B O3B O 0 1 N N N -4.469 46.557 46.490 0.266 -0.252 6.999 O3B GPX 24 GPX "C5'" "C5'" C 0 1 N N N -0.392 48.896 43.908 0.870 0.182 1.794 "C5'" GPX 25 GPX "C4'" "C4'" C 0 1 N N R 0.659 50.060 43.994 1.013 -0.351 0.368 "C4'" GPX 26 GPX "O4'" "O4'" O 0 1 N N N 1.858 49.663 44.622 -0.260 -0.314 -0.312 "O4'" GPX 27 GPX "C1'" "C1'" C 0 1 N N R 2.884 49.411 43.681 0.058 -0.349 -1.720 "C1'" GPX 28 GPX "C2'" "C2'" C 0 1 N N R 2.179 49.485 42.341 1.290 0.570 -1.870 "C2'" GPX 29 GPX "O2'" "O2'" O 0 1 N N N 3.006 50.075 41.325 2.216 -0.030 -2.809 "O2'" GPX 30 GPX "C3'" "C3'" C 0 1 N N R 1.057 50.482 42.624 1.931 0.571 -0.464 "C3'" GPX 31 GPX H8 H8 H 0 1 N N N 1.675 46.845 43.918 -2.033 1.514 -1.109 H8 GPX 32 GPX HN1 HN1 H 0 1 N N N 7.794 46.607 45.770 -2.786 -0.539 -7.193 HN1 GPX 33 GPX HN21 1HN2 H 0 0 N N N 7.772 49.978 44.784 0.074 -2.453 -6.548 HN21 GPX 34 GPX HN22 2HN2 H 0 0 N N N 8.620 48.565 44.576 -1.089 -2.067 -7.697 HN22 GPX 35 GPX HO1 HO1 H 0 1 N N N 1.755 51.765 39.740 4.473 1.690 -3.298 HO1 GPX 36 GPX HOA2 2HOA H 0 0 N N N -0.749 49.620 45.954 1.604 -0.960 4.724 HOA2 GPX 37 GPX HOB2 2HOB H 0 0 N N N -6.194 48.030 45.189 -2.211 -0.654 8.156 HOB2 GPX 38 GPX HOB3 3HOB H 0 0 N N N -5.299 46.112 46.363 0.544 -1.176 7.054 HOB3 GPX 39 GPX "H5'1" "1H5'" H 0 0 N N N -0.379 48.297 44.848 1.843 0.172 2.285 "H5'1" GPX 40 GPX "H5'2" "2H5'" H 0 0 N N N -0.050 48.123 43.179 0.489 1.203 1.764 "H5'2" GPX 41 GPX "H4'" "H4'" H 0 1 N N N 0.166 50.872 44.577 1.407 -1.367 0.381 "H4'" GPX 42 GPX "H1'" "H1'" H 0 1 N N N 3.748 50.113 43.642 0.304 -1.365 -2.028 "H1'" GPX 43 GPX "H2'" "H2'" H 0 1 N N N 1.874 48.474 41.980 0.996 1.569 -2.192 "H2'" GPX 44 GPX "H3'" "H3'" H 0 1 N N N 0.187 50.468 41.925 1.965 1.577 -0.045 "H3'" GPX 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GPX P1 O11 SING N N 1 GPX P1 O21 DOUB N N 2 GPX P1 "O3'" SING N N 3 GPX P1 "O2'" SING N N 4 GPX N9 C8 SING Y N 5 GPX N9 C4 SING Y N 6 GPX N9 "C1'" SING N N 7 GPX C8 N7 DOUB Y N 8 GPX C8 H8 SING N N 9 GPX N7 C5 SING Y N 10 GPX C5 C6 SING Y N 11 GPX C5 C4 DOUB Y N 12 GPX C6 O6 DOUB N N 13 GPX C6 N1 SING Y N 14 GPX N1 C2 SING Y N 15 GPX N1 HN1 SING N N 16 GPX C2 N2 SING N N 17 GPX C2 N3 DOUB Y N 18 GPX N2 HN21 SING N N 19 GPX N2 HN22 SING N N 20 GPX N3 C4 SING Y N 21 GPX O11 HO1 SING N N 22 GPX "O3'" "C3'" SING N N 23 GPX PA O1A DOUB N N 24 GPX PA O2A SING N N 25 GPX PA O3A SING N N 26 GPX PA "O5'" SING N N 27 GPX O2A HOA2 SING N N 28 GPX O3A PB SING N N 29 GPX "O5'" "C5'" SING N N 30 GPX PB O1B DOUB N N 31 GPX PB O2B SING N N 32 GPX PB O3B SING N N 33 GPX O2B HOB2 SING N N 34 GPX O3B HOB3 SING N N 35 GPX "C5'" "C4'" SING N N 36 GPX "C5'" "H5'1" SING N N 37 GPX "C5'" "H5'2" SING N N 38 GPX "C4'" "O4'" SING N N 39 GPX "C4'" "C3'" SING N N 40 GPX "C4'" "H4'" SING N N 41 GPX "O4'" "C1'" SING N N 42 GPX "C1'" "C2'" SING N N 43 GPX "C1'" "H1'" SING N N 44 GPX "C2'" "O2'" SING N N 45 GPX "C2'" "C3'" SING N N 46 GPX "C2'" "H2'" SING N N 47 GPX "C3'" "H3'" SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GPX SMILES ACDLabs 10.04 "O=P3(OC4C(OC(n1c2N=C(N)NC(=O)c2nc1)C4O3)COP(=O)(O)OP(=O)(O)O)O" GPX SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@H]4O[P@@](O)(=O)O[C@@H]34" GPX SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH]4O[P](O)(=O)O[CH]34" GPX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@H]4[C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O[P@@](=O)(O4)O)N=C(NC2=O)N" GPX SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C4C(C(O3)COP(=O)(O)OP(=O)(O)O)OP(=O)(O4)O)N=C(NC2=O)N" GPX InChI InChI 1.03 "InChI=1S/C10H14N5O13P3/c11-10-13-7-4(8(16)14-10)12-2-15(7)9-6-5(26-31(22,23)27-6)3(25-9)1-24-30(20,21)28-29(17,18)19/h2-3,5-6,9H,1H2,(H,20,21)(H,22,23)(H2,17,18,19)(H3,11,13,14,16)/t3-,5-,6-,9-/m1/s1" GPX InChIKey InChI 1.03 NGYWTCOGOZELRS-UUOKFMHZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GPX "SYSTEMATIC NAME" ACDLabs 10.04 "[(2S,3aR,4R,6R,6aR)-6-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-2-hydroxy-2-oxidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]methyl trihydrogen diphosphate" GPX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1R,3S,5R,6R,8R)-8-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxy-3-oxo-2,4,7-trioxa-3$l^{5}-phosphabicyclo[3.3.0]octan-6-yl]methyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GPX "Create component" 1999-07-08 RCSB GPX "Modify descriptor" 2011-06-04 RCSB #