data_GRB # _chem_comp.id GRB _chem_comp.name ;8-bromoguanosine 5'-(dihydrogen phosphate) ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H13 Br N5 O8 P" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-03-15 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 442.117 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GRB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3R1D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GRB P P P 0 1 N N N -6.003 11.899 22.648 -4.927 -0.443 0.836 P GRB 1 GRB BR BR BR 0 0 N N N -4.449 10.392 31.107 -0.328 -1.748 -1.115 BR GRB 2 GRB N1 N1 N 0 1 N N N -6.005 6.969 26.125 5.523 -0.335 0.933 N1 GRB 3 GRB C2 C2 C 0 1 N N N -6.009 8.191 25.479 4.950 0.877 1.179 C2 GRB 4 GRB N2 N2 N 0 1 N N N -6.316 8.173 24.161 5.717 1.880 1.718 N2 GRB 5 GRB N3 N3 N 0 1 N N N -5.713 9.346 26.065 3.684 1.113 0.915 N3 GRB 6 GRB C4 C4 C 0 1 Y N N -5.434 9.189 27.384 2.899 0.166 0.390 C4 GRB 7 GRB C5 C5 C 0 1 Y N N -5.416 8.015 28.106 3.428 -1.100 0.115 C5 GRB 8 GRB C6 C6 C 0 1 N N N -5.703 6.791 27.473 4.792 -1.340 0.403 C6 GRB 9 GRB O6 O6 O 0 1 N N N -5.744 5.671 28.003 5.296 -2.427 0.175 O6 GRB 10 GRB N7 N7 N 0 1 Y N N -5.081 8.237 29.424 2.426 -1.851 -0.404 N7 GRB 11 GRB C8 C8 C 0 1 Y N N -4.904 9.522 29.488 1.338 -1.138 -0.462 C8 GRB 12 GRB N9 N9 N 0 1 Y N N -5.094 10.168 28.290 1.582 0.116 0.018 N9 GRB 13 GRB "C1'" "C1'" C 0 1 N N R -4.987 11.620 28.116 0.612 1.210 0.117 "C1'" GRB 14 GRB "C2'" "C2'" C 0 1 N N R -3.585 12.159 28.301 0.333 1.820 -1.280 "C2'" GRB 15 GRB "O2'" "O2'" O 0 1 N N N -3.655 13.472 28.842 1.292 2.831 -1.595 "O2'" GRB 16 GRB "C3'" "C3'" C 0 1 N N S -3.097 12.078 26.868 -1.076 2.434 -1.090 "C3'" GRB 17 GRB "O3'" "O3'" O 0 1 N N N -2.030 12.963 26.640 -0.978 3.833 -0.815 "O3'" GRB 18 GRB "C4'" "C4'" C 0 1 N N R -4.314 12.545 26.100 -1.655 1.682 0.123 "C4'" GRB 19 GRB "O4'" "O4'" O 0 1 N N N -5.420 11.962 26.816 -0.678 0.709 0.530 "O4'" GRB 20 GRB "C5'" "C5'" C 0 1 N N N -4.332 12.089 24.657 -2.955 0.979 -0.273 "C5'" GRB 21 GRB "O5'" "O5'" O 0 1 N N N -5.556 12.476 24.065 -3.546 0.382 0.883 "O5'" GRB 22 GRB OP1 OP1 O 0 1 N N N -5.738 10.455 22.499 -6.130 0.548 0.430 OP1 GRB 23 GRB OP2 OP2 O 0 1 N N N -5.492 12.836 21.607 -4.821 -1.526 -0.167 OP2 GRB 24 GRB OP3 OP3 O 0 1 N Y N -7.569 12.126 22.751 -5.223 -1.079 2.285 OP3 GRB 25 GRB HN1 HN1 H 0 1 N N N -6.235 6.157 25.588 6.461 -0.475 1.135 HN1 GRB 26 GRB HN2 HN2 H 0 1 N N N -6.319 9.024 23.637 6.653 1.720 1.918 HN2 GRB 27 GRB HN2A HN2A H 0 0 N N N -6.540 7.308 23.712 5.323 2.748 1.898 HN2A GRB 28 GRB "H1'" "H1'" H 0 1 N N N -5.616 12.071 28.898 0.967 1.975 0.807 "H1'" GRB 29 GRB "H2'" "H2'" H 0 1 N N N -2.918 11.635 29.002 0.320 1.046 -2.047 "H2'" GRB 30 GRB "HO2'" "HO2'" H 0 0 N N N -2.776 13.814 28.960 1.159 3.243 -2.460 "HO2'" GRB 31 GRB "H3'" "H3'" H 0 1 N N N -2.728 11.080 26.591 -1.689 2.262 -1.974 "H3'" GRB 32 GRB "HO3'" "HO3'" H 0 0 N N N -1.746 12.891 25.736 -0.567 4.346 -1.524 "HO3'" GRB 33 GRB "H4'" "H4'" H 0 1 N N N -4.341 13.643 26.045 -1.843 2.381 0.938 "H4'" GRB 34 GRB "H5'" "H5'" H 0 1 N N N -3.496 12.553 24.113 -3.646 1.706 -0.699 "H5'" GRB 35 GRB "H5'A" "H5'A" H 0 0 N N N -4.231 10.994 24.615 -2.740 0.206 -1.011 "H5'A" GRB 36 GRB HOP1 HOP1 H 0 0 N N N -5.242 10.304 21.703 -6.258 1.283 1.044 HOP1 GRB 37 GRB HOP3 HOP3 H 0 0 N Y N -7.833 12.800 22.135 -6.042 -1.592 2.330 HOP3 GRB 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GRB OP2 P DOUB N N 1 GRB OP1 P SING N N 2 GRB P OP3 SING N N 3 GRB P "O5'" SING N N 4 GRB C8 BR SING N N 5 GRB C2 N1 SING N N 6 GRB N1 C6 SING N N 7 GRB N1 HN1 SING N N 8 GRB N2 C2 SING N N 9 GRB C2 N3 DOUB N N 10 GRB N2 HN2 SING N N 11 GRB N2 HN2A SING N N 12 GRB N3 C4 SING N N 13 GRB C4 C5 DOUB Y N 14 GRB C4 N9 SING Y N 15 GRB C6 C5 SING N N 16 GRB C5 N7 SING Y N 17 GRB C6 O6 DOUB N N 18 GRB N7 C8 DOUB Y N 19 GRB N9 C8 SING Y N 20 GRB "C1'" N9 SING N N 21 GRB "O4'" "C1'" SING N N 22 GRB "C1'" "C2'" SING N N 23 GRB "C1'" "H1'" SING N N 24 GRB "C3'" "C2'" SING N N 25 GRB "C2'" "O2'" SING N N 26 GRB "C2'" "H2'" SING N N 27 GRB "O2'" "HO2'" SING N N 28 GRB "C4'" "C3'" SING N N 29 GRB "O3'" "C3'" SING N N 30 GRB "C3'" "H3'" SING N N 31 GRB "O3'" "HO3'" SING N N 32 GRB "C5'" "C4'" SING N N 33 GRB "C4'" "O4'" SING N N 34 GRB "C4'" "H4'" SING N N 35 GRB "O5'" "C5'" SING N N 36 GRB "C5'" "H5'" SING N N 37 GRB "C5'" "H5'A" SING N N 38 GRB OP1 HOP1 SING N N 39 GRB OP3 HOP3 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GRB SMILES ACDLabs 12.01 "O=P(O)(O)OCC3OC(n2c(Br)nc1c2N=C(N)NC1=O)C(O)C3O" GRB SMILES_CANONICAL CACTVS 3.370 "NC1=Nc2n([C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O)c(Br)nc2C(=O)N1" GRB SMILES CACTVS 3.370 "NC1=Nc2n([CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O)c(Br)nc2C(=O)N1" GRB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C([C@@H]1[C@H]([C@H]([C@@H](O1)n2c3c(nc2Br)C(=O)NC(=N3)N)O)O)OP(=O)(O)O" GRB SMILES "OpenEye OEToolkits" 1.7.0 "C(C1C(C(C(O1)n2c3c(nc2Br)C(=O)NC(=N3)N)O)O)OP(=O)(O)O" GRB InChI InChI 1.03 "InChI=1S/C10H13BrN5O8P/c11-9-13-3-6(14-10(12)15-7(3)19)16(9)8-5(18)4(17)2(24-8)1-23-25(20,21)22/h2,4-5,8,17-18H,1H2,(H2,20,21,22)(H3,12,14,15,19)/t2-,4-,5-,8-/m1/s1" GRB InChIKey InChI 1.03 SJLDUTNIPDQOCZ-UMMCILCDSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GRB "SYSTEMATIC NAME" ACDLabs 12.01 ;8-bromoguanosine 5'-(dihydrogen phosphate) ; GRB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3S,4R,5R)-5-(2-azanyl-8-bromo-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GRB "Create component" 2011-03-15 RCSB GRB "Modify aromatic_flag" 2011-06-04 RCSB GRB "Modify descriptor" 2011-06-04 RCSB #