data_GRJ # _chem_comp.id GRJ _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{S},3~{S},4~{S},5~{R})-3,4-bis(oxidanyl)-5-[(1~{S})-1-oxidanylethyl]oxolan-2-yl] hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H25 N5 O15 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-17 _chem_comp.pdbx_modified_date 2023-03-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 589.342 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GRJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7XPV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GRJ N1 N1 N 0 1 Y N N 13.329 11.400 -9.692 -5.686 1.493 -2.035 N1 GRJ 1 GRJ N3 N2 N 0 1 Y N N 10.982 13.890 -8.186 -8.241 2.855 0.223 N3 GRJ 2 GRJ C4 C1 C 0 1 N N S 19.606 14.154 -16.905 5.938 2.093 -0.990 C4 GRJ 3 GRJ C5 C2 C 0 1 N N S 19.649 13.937 -15.400 5.807 0.615 -0.558 C5 GRJ 4 GRJ C6 C3 C 0 1 N N N 18.572 13.461 -11.886 -1.449 -2.647 -0.174 C6 GRJ 5 GRJ C7 C4 C 0 1 N N R 17.959 14.191 -10.697 -2.544 -1.991 0.669 C7 GRJ 6 GRJ C8 C5 C 0 1 N N S 18.448 13.593 -9.386 -3.800 -2.890 0.714 C8 GRJ 7 GRJ C10 C6 C 0 1 N N R 16.083 13.800 -9.372 -4.295 -0.507 0.611 C10 GRJ 8 GRJ C13 C7 C 0 1 Y N N 13.636 13.506 -8.935 -6.133 1.161 0.116 C13 GRJ 9 GRJ C15 C8 C 0 1 Y N N 11.263 12.694 -8.719 -7.626 2.730 -0.945 C15 GRJ 10 GRJ N N3 N 0 1 Y N N 14.806 13.042 -9.379 -5.055 0.398 -0.255 N GRJ 11 GRJ C C9 C 0 1 N N N 15.310 12.544 -15.200 8.526 0.525 2.739 C GRJ 12 GRJ O O1 O 0 1 N N N 18.442 13.236 -15.084 6.507 0.535 0.702 O GRJ 13 GRJ C1 C10 C 0 1 N N S 16.410 12.576 -16.256 8.243 1.771 1.897 C1 GRJ 14 GRJ C11 C11 C 0 1 Y N N 14.624 11.786 -9.832 -4.821 0.635 -1.578 C11 GRJ 15 GRJ C12 C12 C 0 1 Y N N 12.659 12.427 -9.137 -6.529 1.860 -1.038 C12 GRJ 16 GRJ C14 C13 C 0 1 Y N N 11.919 14.844 -8.023 -7.835 2.176 1.289 C14 GRJ 17 GRJ C2 C14 C 0 1 N N R 17.420 13.685 -15.980 7.688 1.351 0.534 C2 GRJ 18 GRJ C3 C15 C 0 1 N N S 18.128 14.133 -17.249 7.204 2.588 -0.254 C3 GRJ 19 GRJ C9 C16 C 0 1 N N R 17.213 13.013 -8.732 -4.978 -1.891 0.674 C9 GRJ 20 GRJ N2 N4 N 0 1 Y N N 13.216 14.669 -8.384 -6.806 1.346 1.247 N2 GRJ 21 GRJ N4 N5 N 0 1 N N N 11.553 16.029 -7.477 -8.511 2.343 2.486 N4 GRJ 22 GRJ O1 O2 O 0 1 N N N 20.833 13.252 -14.967 4.432 0.268 -0.386 O1 GRJ 23 GRJ O10 O3 O 0 1 N N N 17.260 13.207 -7.317 -5.770 -2.004 1.858 O10 GRJ 24 GRJ O11 O4 O 0 1 N N N 18.999 14.619 -8.557 -3.828 -3.650 1.923 O11 GRJ 25 GRJ O12 O5 O 0 1 N N N 20.284 13.089 -17.578 4.792 2.839 -0.576 O12 GRJ 26 GRJ O13 O6 O 0 1 N N N 17.681 15.444 -17.606 8.198 3.003 -1.193 O13 GRJ 27 GRJ O14 O7 O 0 1 N N N 17.083 11.312 -16.297 7.286 2.593 2.568 O14 GRJ 28 GRJ O2 O8 O 0 1 N N N 22.321 11.251 -14.499 4.510 -2.224 0.447 O2 GRJ 29 GRJ O3 O9 O 0 1 N N N 20.537 10.977 -16.257 4.226 -1.664 -1.998 O3 GRJ 30 GRJ O4 O10 O 0 1 N N N 19.940 11.136 -13.692 2.264 -1.217 -0.475 O4 GRJ 31 GRJ O5 O11 O 0 1 N N N 20.535 10.166 -11.435 0.851 -2.189 -2.467 O5 GRJ 32 GRJ O6 O12 O 0 1 N N N 21.543 12.397 -12.021 1.503 -3.623 -0.495 O6 GRJ 33 GRJ O7 O13 O 0 1 N N N 18.979 12.156 -11.475 -0.259 -1.858 -0.107 O7 GRJ 34 GRJ O8 O14 O 0 1 N N N 16.533 14.063 -10.703 -2.990 -0.765 0.049 O8 GRJ 35 GRJ O9 O15 O 0 1 N N N 10.375 11.826 -8.858 -8.049 3.427 -2.027 O9 GRJ 36 GRJ P P1 P 0 1 N N N 20.938 11.646 -14.849 3.866 -1.219 -0.633 P GRJ 37 GRJ P1 P2 P 0 1 N N N 20.257 11.436 -12.142 1.098 -2.252 -0.877 P1 GRJ 38 GRJ H1 H1 H 0 1 N N N 20.041 15.132 -17.159 6.071 2.165 -2.069 H1 GRJ 39 GRJ H2 H2 H 0 1 N N N 19.619 14.926 -14.920 6.275 -0.038 -1.294 H2 GRJ 40 GRJ H3 H3 H 0 1 N N N 19.445 14.021 -12.251 -1.244 -3.647 0.211 H3 GRJ 41 GRJ H4 H4 H 0 1 N N N 17.827 13.378 -12.691 -1.781 -2.717 -1.209 H4 GRJ 42 GRJ H5 H5 H 0 1 N N N 18.248 15.252 -10.739 -2.180 -1.797 1.679 H5 GRJ 43 GRJ H6 H6 H 0 1 N N N 19.182 12.798 -9.584 -3.829 -3.549 -0.154 H6 GRJ 44 GRJ H7 H7 H 0 1 N N N 15.947 14.743 -8.823 -4.201 -0.084 1.611 H7 GRJ 45 GRJ H8 H8 H 0 1 N N N 14.798 13.517 -15.174 9.256 -0.101 2.227 H8 GRJ 46 GRJ H9 H9 H 0 1 N N N 14.585 11.755 -15.449 8.921 0.825 3.709 H9 GRJ 47 GRJ H10 H10 H 0 1 N N N 15.753 12.337 -14.215 7.602 -0.035 2.880 H10 GRJ 48 GRJ H11 H11 H 0 1 N N N 15.943 12.773 -17.232 9.167 2.332 1.755 H11 GRJ 49 GRJ H12 H12 H 0 1 N N N 15.404 11.168 -10.251 -4.035 0.178 -2.160 H12 GRJ 50 GRJ H13 H13 H 0 1 N N N 16.890 14.546 -15.546 8.445 0.809 -0.032 H13 GRJ 51 GRJ H14 H14 H 0 1 N N N 17.940 13.412 -18.059 6.956 3.402 0.426 H14 GRJ 52 GRJ H15 H15 H 0 1 N N N 17.118 11.947 -8.985 -5.589 -2.056 -0.213 H15 GRJ 53 GRJ H17 H17 H 0 1 N N N 12.350 16.631 -7.421 -9.268 2.948 2.536 H17 GRJ 54 GRJ H18 H18 H 0 1 N N N 10.852 16.456 -8.048 -8.228 1.855 3.275 H18 GRJ 55 GRJ H19 H19 H 0 1 N N N 16.479 12.838 -6.920 -6.174 -2.875 1.980 H19 GRJ 56 GRJ H20 H20 H 0 1 N N N 19.302 14.239 -7.741 -4.596 -4.233 2.004 H20 GRJ 57 GRJ H21 H21 H 0 1 N N N 20.334 12.333 -17.005 3.961 2.530 -0.964 H21 GRJ 58 GRJ H22 H22 H 0 1 N N N 16.756 15.417 -17.819 7.924 3.739 -1.757 H22 GRJ 59 GRJ H23 H23 H 0 1 N N N 16.453 10.622 -16.469 6.437 2.157 2.728 H23 GRJ 60 GRJ H24 H24 H 0 1 N N N 22.672 10.689 -15.180 4.314 -1.993 1.365 H24 GRJ 61 GRJ H25 H25 H 0 1 N N N 21.409 10.194 -11.065 0.582 -1.318 -2.789 H25 GRJ 62 GRJ H16 H16 H 0 1 N N N 9.547 12.165 -8.537 -7.628 4.292 -2.126 H16 GRJ 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GRJ O13 C3 SING N N 1 GRJ O12 C4 SING N N 2 GRJ C3 C4 SING N N 3 GRJ C3 C2 SING N N 4 GRJ C4 C5 SING N N 5 GRJ O14 C1 SING N N 6 GRJ O3 P DOUB N N 7 GRJ C1 C2 SING N N 8 GRJ C1 C SING N N 9 GRJ C2 O SING N N 10 GRJ C5 O SING N N 11 GRJ C5 O1 SING N N 12 GRJ O1 P SING N N 13 GRJ P O2 SING N N 14 GRJ P O4 SING N N 15 GRJ O4 P1 SING N N 16 GRJ P1 O6 DOUB N N 17 GRJ P1 O7 SING N N 18 GRJ P1 O5 SING N N 19 GRJ C6 O7 SING N N 20 GRJ C6 C7 SING N N 21 GRJ O8 C7 SING N N 22 GRJ O8 C10 SING N N 23 GRJ C7 C8 SING N N 24 GRJ C11 N1 DOUB Y N 25 GRJ C11 N SING Y N 26 GRJ N1 C12 SING Y N 27 GRJ C8 C9 SING N N 28 GRJ C8 O11 SING N N 29 GRJ N C10 SING N N 30 GRJ N C13 SING Y N 31 GRJ C10 C9 SING N N 32 GRJ C12 C13 DOUB Y N 33 GRJ C12 C15 SING Y N 34 GRJ C13 N2 SING Y N 35 GRJ O9 C15 SING N N 36 GRJ C9 O10 SING N N 37 GRJ C15 N3 DOUB Y N 38 GRJ N2 C14 DOUB Y N 39 GRJ N3 C14 SING Y N 40 GRJ C14 N4 SING N N 41 GRJ C4 H1 SING N N 42 GRJ C5 H2 SING N N 43 GRJ C6 H3 SING N N 44 GRJ C6 H4 SING N N 45 GRJ C7 H5 SING N N 46 GRJ C8 H6 SING N N 47 GRJ C10 H7 SING N N 48 GRJ C H8 SING N N 49 GRJ C H9 SING N N 50 GRJ C H10 SING N N 51 GRJ C1 H11 SING N N 52 GRJ C11 H12 SING N N 53 GRJ C2 H13 SING N N 54 GRJ C3 H14 SING N N 55 GRJ C9 H15 SING N N 56 GRJ N4 H17 SING N N 57 GRJ N4 H18 SING N N 58 GRJ O10 H19 SING N N 59 GRJ O11 H20 SING N N 60 GRJ O12 H21 SING N N 61 GRJ O13 H22 SING N N 62 GRJ O14 H23 SING N N 63 GRJ O2 H24 SING N N 64 GRJ O5 H25 SING N N 65 GRJ O9 H16 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GRJ InChI InChI 1.03 "InChI=1S/C16H25N5O15P2/c1-4(22)11-8(24)10(26)15(34-11)35-38(30,31)36-37(28,29)32-2-5-7(23)9(25)14(33-5)21-3-18-6-12(21)19-16(17)20-13(6)27/h3-5,7-11,14-15,22-26H,2H2,1H3,(H,28,29)(H,30,31)(H3,17,19,20,27)/t4-,5+,7+,8-,9+,10-,11+,14+,15-/m0/s1" GRJ InChIKey InChI 1.03 MBFMULBITZROEC-MREAOPIZSA-N GRJ SMILES_CANONICAL CACTVS 3.385 "C[C@H](O)[C@H]1O[C@@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(O)nc(N)nc34)[C@@H](O)[C@@H]1O" GRJ SMILES CACTVS 3.385 "C[CH](O)[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(O)nc(N)nc34)[CH](O)[CH]1O" GRJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]([C@@H]1[C@H]([C@@H]([C@@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3nc(nc4O)N)O)O)O)O)O" GRJ SMILES "OpenEye OEToolkits" 2.0.7 "CC(C1C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3nc(nc4O)N)O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id GRJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{S},3~{S},4~{S},5~{R})-3,4-bis(oxidanyl)-5-[(1~{S})-1-oxidanylethyl]oxolan-2-yl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GRJ "Create component" 2022-05-17 PDBJ GRJ "Initial release" 2023-03-29 RCSB #