data_GRT # _chem_comp.id GRT _chem_comp.name "(2~{S})-~{N}-[2-[[(2~{S})-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-2-oxidanylidene-ethyl]-2-[[(2~{S})-2-azido-3-phenyl-propanoyl]amino]-4-methyl-pentanamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H41 N7 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-10-05 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 599.745 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GRT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6HUC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GRT C4 C1 C 0 1 Y N N N N N 55.678 -132.927 35.137 8.391 -0.696 -1.157 C4 GRT 1 GRT C5 C2 C 0 1 Y N N N N N 54.400 -132.509 34.768 9.594 -0.370 -1.754 C5 GRT 2 GRT C6 C3 C 0 1 Y N N N N N 53.741 -133.105 33.692 9.650 0.654 -2.681 C6 GRT 3 GRT C7 C4 C 0 1 N N N N N N 57.589 -134.376 34.803 5.930 -0.362 -0.845 C7 GRT 4 GRT C8 C5 C 0 1 N N S N N N 58.641 -134.244 33.689 5.748 0.461 0.433 C8 GRT 5 GRT C15 C6 C 0 1 N N S N N N 61.936 -133.916 35.478 1.990 0.635 1.134 C15 GRT 6 GRT C17 C7 C 0 1 N N N N N N 63.670 -132.866 33.999 0.510 1.414 2.990 C17 GRT 7 GRT C28 C8 C 0 1 N N N N N N 61.462 -135.204 38.997 -1.341 0.327 -0.725 C28 GRT 8 GRT C39 C9 C 0 1 Y N N N N N 64.809 -132.556 40.832 -5.608 1.989 -1.774 C39 GRT 9 GRT C40 C10 C 0 1 Y N N N N N 65.360 -131.430 40.246 -5.737 3.337 -1.498 C40 GRT 10 GRT C41 C11 C 0 1 Y N N N N N 65.401 -130.225 40.929 -6.522 3.753 -0.438 C41 GRT 11 GRT C44 C12 C 0 1 N N N N N N 65.991 -129.132 40.299 -6.664 5.223 -0.138 C44 GRT 12 GRT N45 N1 N 0 1 N N N N N N 65.180 -127.931 40.349 -7.809 5.767 -0.880 N45 GRT 13 GRT C42 C13 C 0 1 Y N N N N N 64.882 -130.156 42.227 -7.177 2.821 0.345 C42 GRT 14 GRT C43 C14 C 0 1 Y N N N N N 64.316 -131.290 42.814 -7.047 1.473 0.069 C43 GRT 15 GRT C38 C15 C 0 1 Y N N N N N 64.269 -132.517 42.135 -6.262 1.057 -0.990 C38 GRT 16 GRT C37 C16 C 0 1 N N N N N N 63.691 -133.595 42.812 -6.126 -0.413 -1.295 C37 GRT 17 GRT C36 C17 C 0 1 N N S N N N 63.720 -134.908 41.957 -4.932 -0.984 -0.527 C36 GRT 18 GRT C46 C18 C 0 1 N N N N N N 63.486 -136.229 42.731 -4.868 -2.498 -0.737 C46 GRT 19 GRT C47 C19 C 0 1 N N N N N N 61.990 -136.389 43.122 -3.752 -3.086 0.129 C47 GRT 20 GRT S48 S1 S 0 1 N N N N N N 61.432 -138.112 43.349 -3.676 -4.882 -0.120 S48 GRT 21 GRT O49 O1 O 0 1 N N N N N N 59.948 -138.103 43.690 -4.877 -5.459 0.373 O49 GRT 22 GRT O50 O2 O 0 1 N N N N N N 62.140 -138.711 44.538 -3.283 -5.136 -1.462 O50 GRT 23 GRT C51 C20 C 0 1 N N N N N N 61.688 -139.137 41.912 -2.313 -5.355 0.979 C51 GRT 24 GRT N35 N2 N 0 1 N N N N N N 62.667 -134.795 40.954 -3.696 -0.370 -1.018 N35 GRT 25 GRT C33 C21 C 0 1 N N N N N N 62.706 -135.428 39.790 -2.612 -0.305 -0.219 C33 GRT 26 GRT O34 O3 O 0 1 N N N N N N 63.640 -136.120 39.381 -2.661 -0.754 0.906 O34 GRT 27 GRT N27 N3 N 0 1 N N N N N N 61.908 -134.967 37.630 -0.319 0.275 0.324 N27 GRT 28 GRT C25 C22 C 0 1 N N N N N N 61.396 -133.987 36.894 0.907 0.784 0.096 C25 GRT 29 GRT O26 O4 O 0 1 N N N N N N 60.493 -133.230 37.264 1.140 1.363 -0.944 O26 GRT 30 GRT C16 C23 C 0 1 N N N N N N 62.990 -132.817 35.373 1.804 1.694 2.221 C16 GRT 31 GRT C19 C24 C 0 1 N N N N N N 64.500 -134.152 33.845 0.646 0.097 3.755 C19 GRT 32 GRT C18 C25 C 0 1 N N N N N N 64.564 -131.638 33.823 0.247 2.553 3.977 C18 GRT 33 GRT N14 N4 N 0 1 N N N N N N 60.740 -133.635 34.695 3.300 0.810 0.501 N14 GRT 34 GRT C12 C26 C 0 1 N N N N N N 59.927 -134.639 34.360 4.383 0.192 1.013 C12 GRT 35 GRT O13 O5 O 0 1 N N N N N N 60.139 -135.822 34.623 4.260 -0.579 1.941 O13 GRT 36 GRT N9 N5 N 0 1 N N N N N N 58.408 -135.189 32.593 6.775 0.084 1.406 N9 GRT 37 GRT N10 N6 N 1 1 N N N N N N 58.618 -134.721 31.349 7.859 0.290 1.188 N10 GRT 38 GRT N11 N7 N -1 1 N N N N N N 58.834 -134.226 30.115 8.942 0.495 0.970 N11 GRT 39 GRT C3 C27 C 0 1 Y N N N N N 56.314 -133.947 34.424 7.243 -0.002 -1.491 C3 GRT 40 GRT C1 C28 C 0 1 Y N N N N N 54.363 -134.130 32.979 8.503 1.352 -3.011 C1 GRT 41 GRT C2 C29 C 0 1 Y N N N N N 55.640 -134.551 33.355 7.299 1.022 -2.418 C2 GRT 42 GRT H1 H1 H 0 1 N N N N N N 56.177 -132.462 35.975 8.347 -1.495 -0.432 H1 GRT 43 GRT H2 H2 H 0 1 N N N N N N 53.916 -131.717 35.320 10.490 -0.914 -1.496 H2 GRT 44 GRT H3 H3 H 0 1 N N N N N N 52.752 -132.774 33.412 10.590 0.909 -3.147 H3 GRT 45 GRT H4 H4 H 0 1 N N N N N N 57.526 -135.434 35.098 5.925 -1.423 -0.597 H4 GRT 46 GRT H5 H5 H 0 1 N N N N N N 57.917 -133.774 35.663 5.114 -0.147 -1.535 H5 GRT 47 GRT H6 H6 H 0 1 N N N N N N 58.689 -133.207 33.325 5.841 1.521 0.198 H6 GRT 48 GRT H7 H7 H 0 1 N N N N N N 62.374 -134.884 35.192 1.931 -0.358 1.579 H7 GRT 49 GRT H8 H8 H 0 1 N N N N N N 62.893 -132.853 33.220 -0.321 1.343 2.288 H8 GRT 50 GRT H9 H9 H 0 1 N N N N N N 60.915 -134.330 39.380 -0.989 -0.216 -1.602 H9 GRT 51 GRT H10 H10 H 0 1 N N N N N N 60.813 -136.091 39.041 -1.533 1.366 -0.993 H10 GRT 52 GRT H11 H11 H 0 1 N N N N N N 64.792 -133.484 40.280 -4.998 1.664 -2.604 H11 GRT 53 GRT H12 H12 H 0 1 N N N N N N 65.762 -131.491 39.246 -5.226 4.065 -2.109 H12 GRT 54 GRT H13 H13 H 0 1 N N N N N N 66.166 -129.390 39.244 -6.825 5.361 0.932 H13 GRT 55 GRT H14 H14 H 0 1 N N N N N N 66.953 -128.924 40.790 -5.755 5.745 -0.438 H14 GRT 56 GRT H15 H15 H 0 1 N N N N N N 65.657 -127.187 39.882 -7.925 6.752 -0.695 H15 GRT 57 GRT H16 H16 H 0 1 N N N N N N 64.304 -128.101 39.897 -7.713 5.594 -1.870 H16 GRT 58 GRT H18 H18 H 0 1 N N N N N N 64.919 -129.226 42.775 -7.790 3.147 1.172 H18 GRT 59 GRT H19 H19 H 0 1 N N N N N N 63.906 -131.221 43.811 -7.559 0.745 0.680 H19 GRT 60 GRT H20 H20 H 0 1 N N N N N N 62.645 -133.347 43.047 -7.035 -0.933 -0.993 H20 GRT 61 GRT H21 H21 H 0 1 N N N N N N 64.246 -133.767 43.746 -5.968 -0.549 -2.365 H21 GRT 62 GRT H22 H22 H 0 1 N N N N N N 64.698 -134.969 41.457 -5.047 -0.769 0.536 H22 GRT 63 GRT H23 H23 H 0 1 N N N N N N 63.784 -137.076 42.095 -5.821 -2.945 -0.454 H23 GRT 64 GRT H24 H24 H 0 1 N N N N N N 64.098 -136.223 43.645 -4.664 -2.711 -1.786 H24 GRT 65 GRT H25 H25 H 0 1 N N N N N N 61.825 -135.850 44.066 -2.799 -2.639 -0.154 H25 GRT 66 GRT H26 H26 H 0 1 N N N N N N 61.379 -135.934 42.328 -3.956 -2.874 1.178 H26 GRT 67 GRT H27 H27 H 0 1 N N N N N N 61.330 -140.156 42.120 -2.559 -5.076 2.004 H27 GRT 68 GRT H28 H28 H 0 1 N N N N N N 61.131 -138.720 41.060 -2.159 -6.433 0.924 H28 GRT 69 GRT H29 H29 H 0 1 N N N N N N 62.761 -139.167 41.670 -1.402 -4.841 0.672 H29 GRT 70 GRT H30 H30 H 0 1 N N N N N N 61.879 -134.213 41.154 -3.658 -0.010 -1.918 H30 GRT 71 GRT H31 H31 H 0 1 N N N N N N 62.615 -135.555 37.237 -0.526 -0.127 1.183 H31 GRT 72 GRT H32 H32 H 0 1 N N N N N N 63.746 -132.963 36.158 2.649 1.662 2.909 H32 GRT 73 GRT H33 H33 H 0 1 N N N N N N 62.508 -131.837 35.505 1.747 2.681 1.762 H33 GRT 74 GRT H34 H34 H 0 1 N N N N N N 63.847 -135.028 33.973 1.435 0.190 4.502 H34 GRT 75 GRT H35 H35 H 0 1 N N N N N N 64.954 -134.177 32.844 -0.297 -0.136 4.249 H35 GRT 76 GRT H36 H36 H 0 1 N N N N N N 65.292 -134.170 34.608 0.899 -0.703 3.059 H36 GRT 77 GRT H37 H37 H 0 1 N N N N N N 63.960 -130.725 33.935 0.150 3.492 3.432 H37 GRT 78 GRT H38 H38 H 0 1 N N N N N N 65.357 -131.649 34.586 -0.674 2.353 4.525 H38 GRT 79 GRT H39 H39 H 0 1 N N N N N N 65.019 -131.656 32.822 1.078 2.625 4.679 H39 GRT 80 GRT H40 H40 H 0 1 N N N N N N 60.530 -132.699 34.411 3.387 1.370 -0.286 H40 GRT 81 GRT H42 H42 H 0 1 N N N N N N 53.861 -134.594 32.143 8.547 2.152 -3.735 H42 GRT 82 GRT H43 H43 H 0 1 N N N N N N 56.116 -135.355 32.813 6.403 1.567 -2.676 H43 GRT 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GRT N11 N10 DOUB N N 1 GRT N10 N9 DOUB N N 2 GRT N9 C8 SING N N 3 GRT C1 C2 DOUB Y N 4 GRT C1 C6 SING Y N 5 GRT C2 C3 SING Y N 6 GRT C8 C12 SING N N 7 GRT C8 C7 SING N N 8 GRT C6 C5 DOUB Y N 9 GRT C18 C17 SING N N 10 GRT C19 C17 SING N N 11 GRT C17 C16 SING N N 12 GRT C12 O13 DOUB N N 13 GRT C12 N14 SING N N 14 GRT C3 C7 SING N N 15 GRT C3 C4 DOUB Y N 16 GRT N14 C15 SING N N 17 GRT C5 C4 SING Y N 18 GRT C16 C15 SING N N 19 GRT C15 C25 SING N N 20 GRT C25 O26 DOUB N N 21 GRT C25 N27 SING N N 22 GRT N27 C28 SING N N 23 GRT C28 C33 SING N N 24 GRT O34 C33 DOUB N N 25 GRT C33 N35 SING N N 26 GRT C40 C39 DOUB Y N 27 GRT C40 C41 SING Y N 28 GRT C44 N45 SING N N 29 GRT C44 C41 SING N N 30 GRT C39 C38 SING Y N 31 GRT C41 C42 DOUB Y N 32 GRT N35 C36 SING N N 33 GRT C51 S48 SING N N 34 GRT C36 C46 SING N N 35 GRT C36 C37 SING N N 36 GRT C38 C37 SING N N 37 GRT C38 C43 DOUB Y N 38 GRT C42 C43 SING Y N 39 GRT C46 C47 SING N N 40 GRT C47 S48 SING N N 41 GRT S48 O49 DOUB N N 42 GRT S48 O50 DOUB N N 43 GRT C4 H1 SING N N 44 GRT C5 H2 SING N N 45 GRT C6 H3 SING N N 46 GRT C7 H4 SING N N 47 GRT C7 H5 SING N N 48 GRT C8 H6 SING N N 49 GRT C15 H7 SING N N 50 GRT C17 H8 SING N N 51 GRT C28 H9 SING N N 52 GRT C28 H10 SING N N 53 GRT C39 H11 SING N N 54 GRT C40 H12 SING N N 55 GRT C44 H13 SING N N 56 GRT C44 H14 SING N N 57 GRT N45 H15 SING N N 58 GRT N45 H16 SING N N 59 GRT C42 H18 SING N N 60 GRT C43 H19 SING N N 61 GRT C37 H20 SING N N 62 GRT C37 H21 SING N N 63 GRT C36 H22 SING N N 64 GRT C46 H23 SING N N 65 GRT C46 H24 SING N N 66 GRT C47 H25 SING N N 67 GRT C47 H26 SING N N 68 GRT C51 H27 SING N N 69 GRT C51 H28 SING N N 70 GRT C51 H29 SING N N 71 GRT N35 H30 SING N N 72 GRT N27 H31 SING N N 73 GRT C16 H32 SING N N 74 GRT C16 H33 SING N N 75 GRT C19 H34 SING N N 76 GRT C19 H35 SING N N 77 GRT C19 H36 SING N N 78 GRT C18 H37 SING N N 79 GRT C18 H38 SING N N 80 GRT C18 H39 SING N N 81 GRT N14 H40 SING N N 82 GRT C1 H42 SING N N 83 GRT C2 H43 SING N N 84 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GRT InChI InChI 1.03 "InChI=1S/C29H41N7O5S/c1-20(2)15-25(34-29(39)26(35-36-31)17-21-7-5-4-6-8-21)28(38)32-19-27(37)33-24(13-14-42(3,40)41)16-22-9-11-23(18-30)12-10-22/h4-12,20,24-26H,13-19,30H2,1-3H3,(H,32,38)(H,33,37)(H,34,39)/t24-,25+,26+/m1/s1" GRT InChIKey InChI 1.03 POJZTOVJTGGZDY-ZNZIZOMTSA-N GRT SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)[C@H](Cc1ccccc1)N=[N+]=[N-])C(=O)NCC(=O)N[C@H](CC[S](C)(=O)=O)Cc2ccc(CN)cc2" GRT SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)[CH](Cc1ccccc1)N=[N+]=[N-])C(=O)NCC(=O)N[CH](CC[S](C)(=O)=O)Cc2ccc(CN)cc2" GRT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)C[C@@H](C(=O)NCC(=O)N[C@H](CCS(=O)(=O)C)Cc1ccc(cc1)CN)NC(=O)[C@H](Cc2ccccc2)N=[N+]=[N-]" GRT SMILES "OpenEye OEToolkits" 2.0.6 "CC(C)CC(C(=O)NCC(=O)NC(CCS(=O)(=O)C)Cc1ccc(cc1)CN)NC(=O)C(Cc2ccccc2)N=[N+]=[N-]" # _pdbx_chem_comp_identifier.comp_id GRT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(2~{S})-~{N}-[2-[[(2~{S})-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-2-oxidanylidene-ethyl]-2-[[(2~{S})-2-azido-3-phenyl-propanoyl]amino]-4-methyl-pentanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GRT "Create component" 2018-10-05 EBI GRT "Initial release" 2019-01-30 RCSB GRT "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id GRT _pdbx_chem_comp_pcm.modified_residue_id THR _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C46 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG1 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #