data_GSP # _chem_comp.id GSP _chem_comp.name "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N5 O13 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 539.246 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GSP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1GIA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GSP PG PG P 0 1 N N N 37.221 -32.274 12.474 -1.026 -0.484 6.915 PG GSP 1 GSP O3B O3B O 0 1 N N N 37.514 -31.584 10.994 -1.015 -1.198 5.472 O3B GSP 2 GSP S1G S1G S 0 1 N N N 38.939 -32.825 13.146 -1.772 1.216 6.761 S1G GSP 3 GSP O2G O2G O 0 1 N N N 36.396 -31.275 13.244 -1.900 -1.363 7.942 O2G GSP 4 GSP O3G O3G O 0 1 N N N 36.476 -33.475 12.007 0.482 -0.360 7.463 O3G GSP 5 GSP PB PB P 0 1 N N S 36.539 -30.736 10.068 -0.128 -0.270 4.500 PB GSP 6 GSP O1B O1B O 0 1 N N N 36.062 -31.672 9.055 -0.735 1.076 4.415 O1B GSP 7 GSP O2B O2B O 0 1 N N N 35.474 -29.962 10.831 1.365 -0.150 5.089 O2B GSP 8 GSP PA PA P 0 1 N N S 37.707 -28.074 9.474 0.823 0.046 2.117 PA GSP 9 GSP O1A O1A O 0 1 N N N 36.469 -27.480 8.953 0.201 1.388 2.069 O1A GSP 10 GSP O2A O2A O 0 1 N N N 38.124 -27.746 10.879 2.300 0.161 2.746 O2A GSP 11 GSP O3A O3A O 0 1 N N N 37.499 -29.683 9.305 -0.074 -0.928 3.031 O3A GSP 12 GSP "O5'" O5* O 0 1 N N N 38.916 -27.799 8.441 0.919 -0.554 0.627 "O5'" GSP 13 GSP "C5'" C5* C 0 1 N N N 40.290 -27.982 8.746 1.724 0.350 -0.131 "C5'" GSP 14 GSP "C4'" C4* C 0 1 N N R 41.124 -26.932 8.112 1.857 -0.164 -1.566 "C4'" GSP 15 GSP "O4'" O4* O 0 1 N N N 40.934 -26.927 6.670 0.559 -0.236 -2.196 "O4'" GSP 16 GSP "C3'" C3* C 0 1 N N S 40.695 -25.538 8.607 2.659 0.836 -2.427 "C3'" GSP 17 GSP "O3'" O3* O 0 1 N N N 41.853 -24.747 8.895 4.023 0.424 -2.534 "O3'" GSP 18 GSP "C2'" C2* C 0 1 N N R 39.943 -24.929 7.393 1.965 0.783 -3.809 "C2'" GSP 19 GSP "O2'" O2* O 0 1 N N N 40.086 -23.530 7.331 2.881 0.339 -4.812 "O2'" GSP 20 GSP "C1'" C1* C 0 1 N N R 40.647 -25.588 6.205 0.825 -0.240 -3.615 "C1'" GSP 21 GSP N9 N9 N 0 1 Y N N 39.749 -25.681 5.036 -0.366 0.176 -4.358 N9 GSP 22 GSP C8 C8 C 0 1 Y N N 38.509 -26.289 4.920 -1.361 0.989 -3.898 C8 GSP 23 GSP N7 N7 N 0 1 Y N N 37.992 -26.231 3.746 -2.263 1.148 -4.822 N7 GSP 24 GSP C5 C5 C 0 1 Y N N 39.028 -25.685 2.977 -1.902 0.451 -5.926 C5 GSP 25 GSP C6 C6 C 0 1 N N N 39.130 -25.486 1.542 -2.480 0.259 -7.203 C6 GSP 26 GSP O6 O6 O 0 1 N N N 38.359 -25.823 0.637 -3.539 0.788 -7.495 O6 GSP 27 GSP N1 N1 N 0 1 N N N 40.312 -24.833 1.213 -1.827 -0.519 -8.093 N1 GSP 28 GSP C2 C2 C 0 1 N N N 41.311 -24.534 2.099 -0.646 -1.110 -7.754 C2 GSP 29 GSP N2 N2 N 0 1 N N N 42.330 -23.811 1.690 -0.008 -1.900 -8.677 N2 GSP 30 GSP N3 N3 N 0 1 N N N 41.260 -24.824 3.393 -0.098 -0.940 -6.572 N3 GSP 31 GSP C4 C4 C 0 1 Y N N 40.065 -25.317 3.772 -0.685 -0.177 -5.641 C4 GSP 32 GSP HOG2 2HOG H 0 0 N N N 36.228 -31.670 14.091 -1.880 -0.901 8.791 HOG2 GSP 33 GSP HOG3 3HOG H 0 0 N N N 36.308 -33.870 12.854 0.831 -1.260 7.528 HOG3 GSP 34 GSP HOB2 2HOB H 0 0 N N N 34.891 -29.455 10.277 1.723 -1.047 5.128 HOB2 GSP 35 GSP HOA2 2HOA H 0 0 N N N 38.924 -28.130 11.216 2.669 -0.732 2.759 HOA2 GSP 36 GSP "H5'1" 1H5* H 0 0 N N N 40.462 -28.033 9.846 2.713 0.423 0.321 "H5'1" GSP 37 GSP "H5'2" 2H5* H 0 0 N N N 40.638 -29.004 8.470 1.255 1.334 -0.140 "H5'2" GSP 38 GSP "H4'" H4* H 0 1 N N N 42.184 -27.151 8.376 2.337 -1.142 -1.574 "H4'" GSP 39 GSP "H3'" H3* H 0 1 N N N 40.075 -25.578 9.533 2.596 1.839 -2.005 "H3'" GSP 40 GSP "HO3'" *HO3 H 0 0 N N N 41.588 -23.887 9.200 4.472 1.083 -3.080 "HO3'" GSP 41 GSP "H2'" H2* H 0 1 N N N 38.843 -25.108 7.433 1.559 1.760 -4.070 "H2'" GSP 42 GSP "HO2'" *HO2 H 0 0 N N N 39.625 -23.157 6.588 3.598 0.987 -4.842 "HO2'" GSP 43 GSP "H1'" H1* H 0 1 N N N 41.546 -25.010 5.887 1.146 -1.230 -3.938 "H1'" GSP 44 GSP H8 H8 H 0 1 N N N 37.956 -26.797 5.728 -1.395 1.433 -2.914 H8 GSP 45 GSP HN1 HN1 H 0 1 N N N 40.458 -24.550 0.243 -2.204 -0.665 -8.975 HN1 GSP 46 GSP HN21 1HN2 H 0 0 N N N 43.074 -23.588 2.350 0.834 -2.324 -8.451 HN21 GSP 47 GSP HN22 2HN2 H 0 0 N N N 41.976 -22.942 1.288 -0.401 -2.039 -9.552 HN22 GSP 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GSP PG O3B SING N N 1 GSP PG S1G DOUB N N 2 GSP PG O2G SING N N 3 GSP PG O3G SING N N 4 GSP O3B PB SING N N 5 GSP O2G HOG2 SING N N 6 GSP O3G HOG3 SING N N 7 GSP PB O1B DOUB N N 8 GSP PB O2B SING N N 9 GSP PB O3A SING N N 10 GSP O2B HOB2 SING N N 11 GSP PA O1A DOUB N N 12 GSP PA O2A SING N N 13 GSP PA O3A SING N N 14 GSP PA "O5'" SING N N 15 GSP O2A HOA2 SING N N 16 GSP "O5'" "C5'" SING N N 17 GSP "C5'" "C4'" SING N N 18 GSP "C5'" "H5'1" SING N N 19 GSP "C5'" "H5'2" SING N N 20 GSP "C4'" "O4'" SING N N 21 GSP "C4'" "C3'" SING N N 22 GSP "C4'" "H4'" SING N N 23 GSP "O4'" "C1'" SING N N 24 GSP "C3'" "O3'" SING N N 25 GSP "C3'" "C2'" SING N N 26 GSP "C3'" "H3'" SING N N 27 GSP "O3'" "HO3'" SING N N 28 GSP "C2'" "O2'" SING N N 29 GSP "C2'" "C1'" SING N N 30 GSP "C2'" "H2'" SING N N 31 GSP "O2'" "HO2'" SING N N 32 GSP "C1'" N9 SING N N 33 GSP "C1'" "H1'" SING N N 34 GSP N9 C8 SING Y N 35 GSP N9 C4 SING Y N 36 GSP C8 N7 DOUB Y N 37 GSP C8 H8 SING N N 38 GSP N7 C5 SING Y N 39 GSP C5 C6 SING N N 40 GSP C5 C4 DOUB Y N 41 GSP C6 O6 DOUB N N 42 GSP C6 N1 SING N N 43 GSP N1 C2 SING N N 44 GSP N1 HN1 SING N N 45 GSP C2 N2 SING N N 46 GSP C2 N3 DOUB N N 47 GSP N2 HN21 SING N N 48 GSP N2 HN22 SING N N 49 GSP N3 C4 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GSP SMILES ACDLabs 10.04 "S=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O" GSP SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=S)[C@@H](O)[C@H]3O" GSP SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=S)[CH](O)[CH]3O" GSP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@](=O)(O)OP(=S)(O)O)O)O)N=C(NC2=O)N" GSP SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=S)(O)O)O)O)N=C(NC2=O)N" GSP InChI InChI 1.03 "InChI=1S/C10H16N5O13P3S/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(26-9)1-25-29(19,20)27-30(21,22)28-31(23,24)32/h2-3,5-6,9,16-17H,1H2,(H,19,20)(H,21,22)(H2,23,24,32)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1" GSP InChIKey InChI 1.03 XOFLBQFBSOEHOG-UUOKFMHZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GSP "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(S)-hydroxy{[(S)-hydroxy(thiophosphonooxy)phosphoryl]oxy}phosphoryl]guanosine" GSP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] dihydroxyphosphinothioyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GSP "Create component" 1999-07-08 EBI GSP "Modify descriptor" 2011-06-04 RCSB #