data_GSS # _chem_comp.id GSS _chem_comp.name "2'-DEOXY-N2-(S)STYRENE OXIDE GUANOSINE MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C18 H22 N5 O8 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2019-09-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 467.370 _chem_comp.one_letter_code G _chem_comp.three_letter_code GSS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1AP1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GSS P P P 0 1 N N N 5.901 7.190 13.458 -0.801 -0.902 -6.689 P GSS 1 GSS OP1 O1P O 0 1 N N N 6.373 8.579 13.632 0.647 -0.717 -6.927 OP1 GSS 2 GSS OP2 O2P O 0 1 N N N 6.517 6.088 14.230 -1.249 -2.359 -7.207 OP2 GSS 3 GSS OP3 O3P O 0 1 N Y N 5.981 6.802 11.898 -1.624 0.227 -7.488 OP3 GSS 4 GSS "O5'" O5* O 0 1 N N N 4.320 7.194 13.712 -1.107 -0.775 -5.113 "O5'" GSS 5 GSS "C5'" C5* C 0 1 N N N 3.533 8.220 13.103 -0.690 0.532 -4.716 "C5'" GSS 6 GSS "C4'" C4* C 0 1 N N R 2.074 8.136 13.518 -0.954 0.719 -3.221 "C4'" GSS 7 GSS "O4'" O4* O 0 1 N N N 1.482 6.900 13.061 -0.124 -0.168 -2.438 "O4'" GSS 8 GSS "C3'" C3* C 0 1 N N S 1.948 8.192 15.034 -0.511 2.131 -2.760 "C3'" GSS 9 GSS "O3'" O3* O 0 1 N N N 1.098 9.291 15.418 -1.554 3.086 -2.967 "O3'" GSS 10 GSS "C2'" C2* C 0 1 N N N 1.375 6.850 15.439 -0.253 1.914 -1.249 "C2'" GSS 11 GSS "C1'" C1* C 0 1 N N R 0.865 6.205 14.165 -0.041 0.393 -1.118 "C1'" GSS 12 GSS N9 N9 N 0 1 Y N N 1.170 4.757 14.112 1.279 0.122 -0.544 N9 GSS 13 GSS C8 C8 C 0 1 Y N N 2.369 4.120 14.105 2.441 -0.048 -1.238 C8 GSS 14 GSS N7 N7 N 0 1 Y N N 2.365 2.836 13.952 3.420 -0.272 -0.411 N7 GSS 15 GSS C5 C5 C 0 1 Y N N 0.999 2.563 13.849 2.946 -0.258 0.858 C5 GSS 16 GSS C6 C6 C 0 1 N N N 0.329 1.322 13.665 3.536 -0.437 2.132 C6 GSS 17 GSS O6 O6 O 0 1 N N N 0.817 0.200 13.543 4.730 -0.659 2.242 O6 GSS 18 GSS N1 N1 N 0 1 N N N -1.049 1.488 13.618 2.744 -0.350 3.223 N1 GSS 19 GSS C2 C2 C 0 1 N N N -1.711 2.693 13.735 1.410 -0.107 3.088 C2 GSS 20 GSS N2 N2 N 0 1 N N N -3.048 2.631 13.717 0.629 -0.029 4.214 N2 GSS 21 GSS N3 N3 N 0 1 N N N -1.088 3.867 13.903 0.850 0.060 1.911 N3 GSS 22 GSS C4 C4 C 0 1 Y N N 0.258 3.733 13.952 1.572 -0.006 0.786 C4 GSS 23 GSS CA CA C 0 1 N N S -3.868 3.862 13.926 -0.805 0.236 4.094 CA GSS 24 GSS CB CB C 0 1 N N N -5.343 3.474 14.056 -1.049 1.747 4.132 CB GSS 25 GSS OB OB O 0 1 N N N -5.638 2.431 13.135 -0.568 2.275 5.370 OB GSS 26 GSS CJ CJ C 0 1 Y N N -3.694 4.801 12.754 -1.536 -0.418 5.237 CJ GSS 27 GSS CO CO C 0 1 Y N N -3.369 4.294 11.492 -2.836 -0.857 5.066 CO GSS 28 GSS "CO'" "CO'" C 0 1 Y N N -3.855 6.179 12.933 -0.904 -0.586 6.455 "CO'" GSS 29 GSS CM CM C 0 1 Y N N -3.205 5.162 10.408 -3.506 -1.458 6.115 CM GSS 30 GSS "CM'" "CM'" C 0 1 Y N N -3.691 7.049 11.849 -1.576 -1.184 7.505 "CM'" GSS 31 GSS CP CP C 0 1 Y N N -3.366 6.540 10.586 -2.876 -1.621 7.335 CP GSS 32 GSS HOP2 2HOP H 0 0 N N N 6.213 5.194 14.118 -1.049 -2.393 -8.153 HOP2 GSS 33 GSS HOP3 3HOP H 0 0 N N N 5.677 5.908 11.786 -2.561 0.071 -7.307 HOP3 GSS 34 GSS "H5'" 1H5* H 0 1 N N N 3.604 8.121 12.019 -1.249 1.279 -5.280 "H5'" GSS 35 GSS "H5''" 2H5* H 0 0 N N N 3.932 9.193 13.396 0.374 0.650 -4.914 "H5''" GSS 36 GSS "H4'" H4* H 0 1 N N N 1.527 8.976 13.082 -2.008 0.555 -2.995 "H4'" GSS 37 GSS "H3'" H3* H 0 1 N N N 2.937 8.312 15.479 0.400 2.438 -3.271 "H3'" GSS 38 GSS "HO3'" *HO3 H 0 0 N Y N 1.019 9.325 16.364 -1.253 3.918 -2.577 "HO3'" GSS 39 GSS "H2'" 1H2* H 0 1 N N N 2.157 6.236 15.884 -1.117 2.230 -0.665 "H2'" GSS 40 GSS "H2''" 2H2* H 0 0 N N N 0.555 6.978 16.143 0.640 2.452 -0.934 "H2''" GSS 41 GSS "H1'" H1* H 0 1 N N N -0.214 6.342 14.109 -0.816 -0.035 -0.483 "H1'" GSS 42 GSS H8 H8 H 0 1 N N N 3.301 4.669 14.236 2.535 -0.004 -2.313 H8 GSS 43 GSS H1 H1 H 0 1 N N N -1.588 0.645 13.482 3.126 -0.469 4.107 H1 GSS 44 GSS H2 H2 H 0 1 N N N -3.506 1.741 13.583 1.028 -0.151 5.090 H2 GSS 45 GSS HA HA H 0 1 N N N -3.547 4.355 14.833 -1.172 -0.166 3.150 HA GSS 46 GSS HB1 1HB H 0 1 N N N -5.962 4.338 13.849 -2.117 1.945 4.042 HB1 GSS 47 GSS HB2 2HB H 0 1 N N N -5.540 3.129 15.057 -0.520 2.221 3.305 HB2 GSS 48 GSS HB HB H 0 1 N N N -5.609 2.801 12.250 -0.741 3.227 5.353 HB GSS 49 GSS HO HO H 0 1 N N N -3.242 3.230 11.356 -3.328 -0.729 4.113 HO GSS 50 GSS "HO'" "HO'" H 0 1 N N N -4.106 6.572 13.907 0.111 -0.244 6.589 "HO'" GSS 51 GSS HM HM H 0 1 N N N -2.955 4.769 9.433 -4.521 -1.800 5.982 HM GSS 52 GSS "HM'" "HM'" H 0 1 N N N -3.815 8.112 11.987 -1.084 -1.311 8.458 "HM'" GSS 53 GSS HP HP H 0 1 N N N -3.240 7.211 9.750 -3.400 -2.091 8.154 HP GSS 54 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GSS P OP1 DOUB N N 1 GSS P OP2 SING N N 2 GSS P OP3 SING N N 3 GSS P "O5'" SING N N 4 GSS OP2 HOP2 SING N N 5 GSS OP3 HOP3 SING N N 6 GSS "O5'" "C5'" SING N N 7 GSS "C5'" "C4'" SING N N 8 GSS "C5'" "H5'" SING N N 9 GSS "C5'" "H5''" SING N N 10 GSS "C4'" "O4'" SING N N 11 GSS "C4'" "C3'" SING N N 12 GSS "C4'" "H4'" SING N N 13 GSS "O4'" "C1'" SING N N 14 GSS "C3'" "O3'" SING N N 15 GSS "C3'" "C2'" SING N N 16 GSS "C3'" "H3'" SING N N 17 GSS "O3'" "HO3'" SING N N 18 GSS "C2'" "C1'" SING N N 19 GSS "C2'" "H2'" SING N N 20 GSS "C2'" "H2''" SING N N 21 GSS "C1'" N9 SING N N 22 GSS "C1'" "H1'" SING N N 23 GSS N9 C8 SING Y N 24 GSS N9 C4 SING Y N 25 GSS C8 N7 DOUB Y N 26 GSS C8 H8 SING N N 27 GSS N7 C5 SING Y N 28 GSS C5 C6 SING N N 29 GSS C5 C4 DOUB Y N 30 GSS C6 O6 DOUB N N 31 GSS C6 N1 SING N N 32 GSS N1 C2 SING N N 33 GSS N1 H1 SING N N 34 GSS C2 N2 SING N N 35 GSS C2 N3 DOUB N N 36 GSS N2 CA SING N N 37 GSS N2 H2 SING N N 38 GSS N3 C4 SING N N 39 GSS CA CB SING N N 40 GSS CA CJ SING N N 41 GSS CA HA SING N N 42 GSS CB OB SING N N 43 GSS CB HB1 SING N N 44 GSS CB HB2 SING N N 45 GSS OB HB SING N N 46 GSS CJ CO DOUB Y N 47 GSS CJ "CO'" SING Y N 48 GSS CO CM SING Y N 49 GSS CO HO SING N N 50 GSS "CO'" "CM'" DOUB Y N 51 GSS "CO'" "HO'" SING N N 52 GSS CM CP DOUB Y N 53 GSS CM HM SING N N 54 GSS "CM'" CP SING Y N 55 GSS "CM'" "HM'" SING N N 56 GSS CP HP SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GSS SMILES ACDLabs 10.04 "O=C2c3ncn(c3N=C(NC(c1ccccc1)CO)N2)C4OC(C(O)C4)COP(=O)(O)O" GSS SMILES_CANONICAL CACTVS 3.341 "OC[C@@H](NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c4ccccc4" GSS SMILES CACTVS 3.341 "OC[CH](NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c4ccccc4" GSS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)[C@@H](CO)NC2=Nc3c(ncn3[C@H]4C[C@@H]([C@H](O4)COP(=O)(O)O)O)C(=O)N2" GSS SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C(CO)NC2=Nc3c(ncn3C4CC(C(O4)COP(=O)(O)O)O)C(=O)N2" GSS InChI InChI 1.03 "InChI=1S/C18H22N5O8P/c24-7-11(10-4-2-1-3-5-10)20-18-21-16-15(17(26)22-18)19-9-23(16)14-6-12(25)13(31-14)8-30-32(27,28)29/h1-5,9,11-14,24-25H,6-8H2,(H2,27,28,29)(H2,20,21,22,26)/t11-,12+,13-,14-/m1/s1" GSS InChIKey InChI 1.03 PJRDXCSKOSXVOB-XJFOESAGSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GSS "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxy-N-[(1S)-2-hydroxy-1-phenylethyl]guanosine 5'-(dihydrogen phosphate)" GSS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-[2-[[(1S)-2-hydroxy-1-phenyl-ethyl]amino]-6-oxo-1H-purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GSS "Create component" 1999-07-08 EBI GSS "Modify descriptor" 2011-06-04 RCSB GSS "Modify internal type" 2019-09-13 PDBE 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