data_GTD # _chem_comp.id GTD _chem_comp.name "1-(S-GLUTATHIONYL)-2,4,6-TRINITROCYCLOHEXA-2,5-DIENE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H20 N6 O12 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(S)-2-AMINO-5-((R)-1-(CARBOXYMETHYLAMINO)-1-OXO-3-(2,4,6-TRINITROCYCLOHEXA-2,5-DIENYLTHIO)PROPAN-2-YLAMINO)-5-OXOPENTANOIC ACID" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 520.428 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GTD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4GST _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GTD N1 N1 N 0 1 N N N 18.031 14.866 13.566 -5.812 2.722 1.865 N1 GTD 1 GTD CA1 CA1 C 0 1 N N S 18.526 14.371 12.210 -5.495 3.029 0.464 CA1 GTD 2 GTD C1 C1 C 0 1 N N N 17.550 13.310 11.736 -6.761 3.381 -0.273 C1 GTD 3 GTD O11 O11 O 0 1 N N N 17.405 13.021 10.554 -7.832 3.041 0.170 O11 GTD 4 GTD O12 O12 O 0 1 N N N 16.787 12.695 12.668 -6.699 4.071 -1.423 O12 GTD 5 GTD CB1 CB1 C 0 1 N N N 19.978 13.832 12.363 -4.846 1.807 -0.191 CB1 GTD 6 GTD CG1 CG1 C 0 1 N N N 20.579 13.585 10.985 -3.499 1.525 0.477 CG1 GTD 7 GTD CD1 CD1 C 0 1 N N N 22.081 13.401 11.015 -2.860 0.322 -0.168 CD1 GTD 8 GTD OE1 OE1 O 0 1 N N N 22.832 13.855 11.944 -3.427 -0.253 -1.073 OE1 GTD 9 GTD N2 N2 N 0 1 N N N 22.575 12.736 9.980 -1.659 -0.114 0.261 N2 GTD 10 GTD CA2 CA2 C 0 1 N N R 23.918 12.125 9.949 -1.039 -1.284 -0.365 CA2 GTD 11 GTD C2 C2 C 0 1 N N N 24.584 12.618 8.657 -1.565 -2.539 0.282 C2 GTD 12 GTD O2 O2 O 0 1 N N N 25.579 12.029 8.223 -2.378 -2.464 1.178 O2 GTD 13 GTD CB2 CB2 C 0 1 N N N 23.832 10.615 9.954 0.479 -1.214 -0.184 CB2 GTD 14 GTD SG2 SG2 S 0 1 N N N 22.933 9.924 11.308 1.112 0.297 -0.963 SG2 GTD 15 GTD N3 N3 N 0 1 N N N 24.039 13.710 8.072 -1.131 -3.745 -0.136 N3 GTD 16 GTD CA3 CA3 C 0 1 N N N 24.614 14.204 6.825 -1.642 -4.965 0.493 CA3 GTD 17 GTD C3 C3 C 0 1 N N N 25.286 15.561 6.981 -1.004 -6.168 -0.152 C3 GTD 18 GTD O31 O31 O 0 1 N N N 25.536 16.016 8.093 -0.203 -6.021 -1.045 O31 GTD 19 GTD O32 O32 O 0 1 N N N 25.633 16.217 5.872 -1.324 -7.403 0.266 O32 GTD 20 GTD "C1'" "C1'" C 0 1 N N N 24.208 9.573 12.493 2.881 0.120 -0.603 "C1'" GTD 21 GTD "C2'" "C2'" C 0 1 N N N 24.371 8.076 12.459 3.086 0.150 0.882 "C2'" GTD 22 GTD "N2'" "N2'" N 1 1 N N N 25.221 7.418 11.487 2.804 -1.077 1.661 "N2'" GTD 23 GTD O21 O21 O 0 1 N N N 25.243 7.885 10.336 2.414 -2.082 1.093 O21 GTD 24 GTD O22 O22 O -1 1 N N N 25.794 6.369 11.870 2.961 -1.082 2.868 O22 GTD 25 GTD "C3'" "C3'" C 0 1 N N N 23.716 7.198 13.282 3.499 1.205 1.515 "C3'" GTD 26 GTD "C4'" "C4'" C 0 1 N N N 23.042 7.718 14.377 3.813 2.497 0.822 "C4'" GTD 27 GTD "N4'" "N4'" N 1 1 N N N 22.235 6.793 15.177 5.016 3.083 1.420 "N4'" GTD 28 GTD O41 O41 O 0 1 N N N 22.403 5.557 15.053 6.074 2.482 1.371 O41 GTD 29 GTD O42 O42 O -1 1 N N N 21.405 7.181 16.018 4.956 4.170 1.967 O42 GTD 30 GTD "C5'" "C5'" C 0 1 N N N 22.997 9.073 14.675 4.047 2.284 -0.643 "C5'" GTD 31 GTD "C6'" "C6'" C 0 1 N N N 23.622 9.963 13.824 3.633 1.228 -1.276 "C6'" GTD 32 GTD "N6'" "N6'" N 1 1 N N N 23.910 11.325 14.136 3.917 1.114 -2.724 "N6'" GTD 33 GTD O61 O61 O 0 1 N N N 23.044 11.931 14.785 3.541 0.135 -3.343 O61 GTD 34 GTD O62 O62 O -1 1 N N N 24.954 11.857 13.785 4.526 2.000 -3.297 O62 GTD 35 GTD HN11 1HN1 H 0 0 N N N 18.687 15.579 13.884 -6.328 3.512 2.224 HN11 GTD 36 GTD HN12 2HN1 H 0 0 N N N 17.899 14.113 14.242 -6.450 1.940 1.853 HN12 GTD 37 GTD HA1 HA1 H 0 1 N N N 18.565 15.184 11.448 -4.805 3.872 0.423 HA1 GTD 38 GTD HO1 HO1 H 0 1 N N N 16.176 12.030 12.371 -7.512 4.297 -1.895 HO1 GTD 39 GTD HB11 1HB1 H 0 0 N N N 20.613 14.505 12.984 -5.499 0.942 -0.072 HB11 GTD 40 GTD HB12 2HB1 H 0 0 N N N 20.024 12.925 13.010 -4.691 2.003 -1.252 HB12 GTD 41 GTD HG11 1HG1 H 0 0 N N N 20.083 12.720 10.484 -2.846 2.391 0.359 HG11 GTD 42 GTD HG12 2HG1 H 0 0 N N N 20.292 14.396 10.275 -3.654 1.330 1.538 HG12 GTD 43 GTD HN2 HN2 H 0 1 N N N 21.916 12.694 9.201 -1.206 0.346 0.985 HN2 GTD 44 GTD HA2 HA2 H 0 1 N N N 24.506 12.415 10.850 -1.277 -1.296 -1.429 HA2 GTD 45 GTD HB21 1HB2 H 0 0 N N N 23.413 10.249 8.987 0.718 -1.202 0.879 HB21 GTD 46 GTD HB22 2HB2 H 0 0 N N N 24.853 10.170 9.903 0.941 -2.084 -0.651 HB22 GTD 47 GTD HN3 HN3 H 0 1 N N N 23.241 14.136 8.543 -0.480 -3.805 -0.853 HN3 GTD 48 GTD HA31 1HA3 H 0 0 N N N 25.317 13.458 6.387 -1.404 -4.953 1.556 HA31 GTD 49 GTD HA32 2HA3 H 0 0 N N N 23.848 14.228 6.014 -2.724 -5.015 0.364 HA32 GTD 50 GTD HO3 HO3 H 0 1 N N N 26.052 17.063 5.969 -0.914 -8.175 -0.148 HO3 GTD 51 GTD "H1'" "H1'" H 0 1 N N N 25.176 10.093 12.305 3.231 -0.837 -0.991 "H1'" GTD 52 GTD "H3'" "H3'" H 0 1 N N N 23.730 6.115 13.071 3.623 1.149 2.586 "H3'" GTD 53 GTD "H4'" "H4'" H 0 1 N N N 24.066 8.035 14.680 2.978 3.185 0.954 "H4'" GTD 54 GTD "H5'" "H5'" H 0 1 N N N 22.472 9.437 15.574 4.583 3.041 -1.196 "H5'" GTD 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GTD N1 CA1 SING N N 1 GTD N1 HN11 SING N N 2 GTD N1 HN12 SING N N 3 GTD CA1 C1 SING N N 4 GTD CA1 CB1 SING N N 5 GTD CA1 HA1 SING N N 6 GTD C1 O11 DOUB N N 7 GTD C1 O12 SING N N 8 GTD O12 HO1 SING N N 9 GTD CB1 CG1 SING N N 10 GTD CB1 HB11 SING N N 11 GTD CB1 HB12 SING N N 12 GTD CG1 CD1 SING N N 13 GTD CG1 HG11 SING N N 14 GTD CG1 HG12 SING N N 15 GTD CD1 OE1 DOUB N N 16 GTD CD1 N2 SING N N 17 GTD N2 CA2 SING N N 18 GTD N2 HN2 SING N N 19 GTD CA2 C2 SING N N 20 GTD CA2 CB2 SING N N 21 GTD CA2 HA2 SING N N 22 GTD C2 O2 DOUB N N 23 GTD C2 N3 SING N N 24 GTD CB2 SG2 SING N N 25 GTD CB2 HB21 SING N N 26 GTD CB2 HB22 SING N N 27 GTD SG2 "C1'" SING N N 28 GTD N3 CA3 SING N N 29 GTD N3 HN3 SING N N 30 GTD CA3 C3 SING N N 31 GTD CA3 HA31 SING N N 32 GTD CA3 HA32 SING N N 33 GTD C3 O31 DOUB N N 34 GTD C3 O32 SING N N 35 GTD O32 HO3 SING N N 36 GTD "C1'" "C2'" SING N N 37 GTD "C1'" "C6'" SING N N 38 GTD "C1'" "H1'" SING N N 39 GTD "C2'" "N2'" SING N N 40 GTD "C2'" "C3'" DOUB N N 41 GTD "N2'" O21 DOUB N N 42 GTD "N2'" O22 SING N N 43 GTD "C3'" "C4'" SING N N 44 GTD "C3'" "H3'" SING N N 45 GTD "C4'" "N4'" SING N N 46 GTD "C4'" "C5'" SING N N 47 GTD "C4'" "H4'" SING N N 48 GTD "N4'" O41 DOUB N N 49 GTD "N4'" O42 SING N N 50 GTD "C5'" "C6'" DOUB N N 51 GTD "C5'" "H5'" SING N N 52 GTD "C6'" "N6'" SING N N 53 GTD "N6'" O61 DOUB N N 54 GTD "N6'" O62 SING N N 55 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GTD SMILES ACDLabs 10.04 "O=[N+]([O-])C1=CC([N+]([O-])=O)C=C([N+]([O-])=O)C1SCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N" GTD SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CCC(=O)N[C@@H](CS[C@@H]1C(=C[C@@H](C=C1[N+]([O-])=O)[N+]([O-])=O)[N+]([O-])=O)C(=O)NCC(O)=O)C(O)=O" GTD SMILES CACTVS 3.341 "N[CH](CCC(=O)N[CH](CS[CH]1C(=C[CH](C=C1[N+]([O-])=O)[N+]([O-])=O)[N+]([O-])=O)C(=O)NCC(O)=O)C(O)=O" GTD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=C(C(C(=CC1[N+](=O)[O-])[N+](=O)[O-])SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H](C(=O)O)N)[N+](=O)[O-]" GTD SMILES "OpenEye OEToolkits" 1.5.0 "C1=C(C(C(=CC1[N+](=O)[O-])[N+](=O)[O-])SCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N)[N+](=O)[O-]" GTD InChI InChI 1.03 "InChI=1S/C16H20N6O12S/c17-8(16(27)28)1-2-12(23)19-9(15(26)18-5-13(24)25)6-35-14-10(21(31)32)3-7(20(29)30)4-11(14)22(33)34/h3-4,7-9,14H,1-2,5-6,17H2,(H,18,26)(H,19,23)(H,24,25)(H,27,28)/t7-,8-,9-,14+/m0/s1" GTD InChIKey InChI 1.03 VQUXYLXGOSJDJJ-OSGJSWLFSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GTD "SYSTEMATIC NAME" ACDLabs 10.04 "L-gamma-glutamyl-S-(cis-2,4,6-trinitrocyclohexa-2,5-dien-1-yl)-L-cysteinylglycine" GTD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-5-[[(2R)-1-(carboxymethylamino)-1-oxo-3-[(2,4,6-trinitro-1-cyclohexa-2,5-dienyl)sulfanyl]propan-2-yl]amino]-5-oxo-pentanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GTD "Create component" 1999-07-08 RCSB GTD "Modify descriptor" 2011-06-04 RCSB GTD "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id GTD _pdbx_chem_comp_synonyms.name "(S)-2-AMINO-5-((R)-1-(CARBOXYMETHYLAMINO)-1-OXO-3-(2,4,6-TRINITROCYCLOHEXA-2,5-DIENYLTHIO)PROPAN-2-YLAMINO)-5-OXOPENTANOIC ACID" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##