data_GTG
#
_chem_comp.id GTG
_chem_comp.name "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H30 N10 O18 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "MRNA CAP ANALOG N7-METHYL GPPPG"
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2002-11-04
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 803.440
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GTG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1MWH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GTG PA PA P 0 1 N N R -34.122 83.560 41.203 -2.772 -3.743 0.335 PA GTG 1
GTG O1A O1A O 0 1 N N N -35.309 84.412 40.767 -3.035 -4.959 1.136 O1A GTG 2
GTG O2A O2A O 0 1 N N N -34.368 82.022 41.157 -3.249 -3.986 -1.183 O2A GTG 3
GTG O3A O3A O 0 1 N N N -33.424 83.454 42.477 -1.196 -3.416 0.356 O3A GTG 4
GTG PB PB P 0 1 N N N -34.120 84.215 43.706 0.133 -4.307 0.177 PB GTG 5
GTG O1B O1B O 0 1 N N N -32.677 84.880 44.102 -0.037 -5.221 -0.974 O1B GTG 6
GTG O2B O2B O 0 1 N N N -33.873 83.360 44.871 0.386 -5.169 1.514 O2B GTG 7
GTG O3B O3B O 0 1 N N N -34.857 85.675 43.448 1.395 -3.342 -0.085 O3B GTG 8
GTG N9A N9A N 0 1 Y N N -29.946 81.560 42.976 -6.536 1.624 -0.170 N9A GTG 9
GTG C8A C8A C 0 1 Y N N -31.269 81.258 43.180 -6.194 1.282 -1.447 C8A GTG 10
GTG N7A N7A N 1 1 Y N N -31.467 80.242 43.952 -6.527 2.238 -2.263 N7A GTG 11
GTG C7X C7MA C 0 1 N N N -32.769 79.733 44.314 -6.316 2.226 -3.713 C7X GTG 12
GTG C5A C5A C 0 1 Y N N -30.188 79.828 44.294 -7.101 3.247 -1.564 C5A GTG 13
GTG C6A C6A C 0 1 N N N -29.763 78.756 45.122 -7.642 4.506 -1.914 C6A GTG 14
GTG O6A O6A O 0 1 N N N -30.452 77.949 45.724 -7.653 4.880 -3.075 O6A GTG 15
GTG N1A N1A N 0 1 N N N -28.384 78.670 45.215 -8.148 5.283 -0.931 N1A GTG 16
GTG C2A C2A C 0 1 N N N -27.480 79.511 44.589 -8.130 4.855 0.363 C2A GTG 17
GTG N2A N2A N 0 1 N N N -26.181 79.284 44.788 -8.651 5.666 1.340 N2A GTG 18
GTG N3A N3A N 0 1 N N N -27.883 80.529 43.804 -7.630 3.688 0.701 N3A GTG 19
GTG C4A C4A C 0 1 Y N N -29.242 80.628 43.702 -7.112 2.864 -0.217 C4A GTG 20
GTG O5D O5*A O 0 1 N N N -32.859 83.642 40.634 -3.586 -2.502 0.961 O5D GTG 21
GTG C5D C5*A C 0 1 N N N -31.825 84.016 39.787 -4.998 -2.527 1.177 C5D GTG 22
GTG C4D C4*A C 0 1 N N R -30.699 83.996 40.670 -5.445 -1.195 1.781 C4D GTG 23
GTG O4D O4*A O 0 1 N N N -30.516 83.700 42.035 -5.260 -0.138 0.824 O4D GTG 24
GTG C3D C3*A C 0 1 N N S -29.833 83.301 39.771 -6.948 -1.250 2.118 C3D GTG 25
GTG O3D O3*A O 0 1 N N N -29.081 83.781 38.769 -7.155 -1.038 3.515 O3D GTG 26
GTG C2D C2*A C 0 1 N N R -29.032 82.506 40.565 -7.564 -0.091 1.296 C2D GTG 27
GTG O2D O2*A O 0 1 N N N -27.697 82.823 40.296 -8.550 0.607 2.060 O2D GTG 28
GTG C1D C1*A C 0 1 N N R -29.449 82.734 42.089 -6.331 0.809 1.030 C1D GTG 29
GTG PG PG P 0 1 N N R -35.571 86.626 44.630 2.857 -3.561 -0.723 PG GTG 30
GTG O1G O1G O 0 1 N N N -37.007 86.744 43.999 2.739 -4.357 -1.965 O1G GTG 31
GTG O2G O2G O 0 1 N N N -34.398 87.451 44.353 3.790 -4.344 0.330 O2G GTG 32
GTG O5E O5*B O 0 1 N N N -35.133 86.392 46.240 3.514 -2.131 -1.062 O5E GTG 33
GTG C5E C5*B C 0 1 N N N -36.426 86.328 46.937 4.767 -1.990 -1.734 C5E GTG 34
GTG C4E C4*B C 0 1 N N R -36.978 87.145 48.107 5.095 -0.504 -1.896 C4E GTG 35
GTG O4E O4*B O 0 1 N N N -36.401 86.776 49.312 5.325 0.089 -0.607 O4E GTG 36
GTG C3E C3*B C 0 1 N N S -36.746 88.655 47.964 6.390 -0.339 -2.714 C3E GTG 37
GTG O3E O3*B O 0 1 N N N -37.643 89.294 47.016 6.138 0.408 -3.906 O3E GTG 38
GTG C2E C2*B C 0 1 N N R -36.901 89.080 49.326 7.336 0.446 -1.773 C2E GTG 39
GTG O2E O2*B O 0 1 N N N -38.240 89.597 49.488 8.065 1.440 -2.496 O2E GTG 40
GTG C1E C1*B C 0 1 N N R -36.674 87.842 50.227 6.339 1.102 -0.784 C1E GTG 41
GTG N9B N9B N 0 1 Y N N -35.484 87.891 51.177 6.997 1.400 0.491 N9B GTG 42
GTG C8B C8B C 0 1 Y N N -34.129 88.133 50.881 7.072 0.573 1.574 C8B GTG 43
GTG N7B N7B N 0 1 Y N N -33.269 88.124 51.906 7.729 1.159 2.531 N7B GTG 44
GTG C5B C5B C 0 1 Y N N -34.130 87.851 52.987 8.114 2.393 2.122 C5B GTG 45
GTG C6B C6B C 0 1 N N N -33.803 87.709 54.409 8.837 3.450 2.724 C6B GTG 46
GTG O6B O6B O 0 1 N N N -32.696 87.812 54.874 9.261 3.348 3.862 O6B GTG 47
GTG N1B N1B N 0 1 N N N -34.947 87.429 55.225 9.046 4.575 2.005 N1B GTG 48
GTG C2B C2B C 0 1 N N N -36.278 87.299 54.716 8.568 4.677 0.733 C2B GTG 49
GTG N2B N2B N 0 1 N N N -37.270 87.036 55.568 8.796 5.832 0.026 N2B GTG 50
GTG N3B N3B N 0 1 N N N -36.565 87.434 53.386 7.895 3.703 0.162 N3B GTG 51
GTG C4B C4B C 0 1 Y N N -35.475 87.705 52.579 7.654 2.557 0.811 C4B GTG 52
GTG HOA2 2HOA H 0 0 N N N -33.628 81.491 41.428 -3.107 -3.228 -1.767 HOA2 GTG 53
GTG HOB2 2HOB H 0 0 N N N -34.285 83.810 45.598 0.506 -4.634 2.310 HOB2 GTG 54
GTG H8 H8 H 0 1 N N N -32.125 81.801 42.747 -5.719 0.356 -1.735 H8 GTG 55
GTG HC71 1HC7 H 0 0 N N N -32.940 78.855 44.980 -7.186 1.789 -4.204 HC71 GTG 56
GTG HC72 2HC7 H 0 0 N N N -33.342 80.586 44.746 -6.172 3.247 -4.068 HC72 GTG 57
GTG HC73 3HC7 H 0 0 N N N -33.313 79.528 43.362 -5.431 1.633 -3.946 HC73 GTG 58
GTG HN1 HN1 H 0 1 N N N -28.001 77.922 45.794 -8.524 6.151 -1.147 HN1 GTG 59
GTG HN21 1HN2 H 0 0 N N N -25.514 79.903 44.326 -9.024 6.530 1.105 HN21 GTG 60
GTG HN22 2HN2 H 0 0 N N N -25.967 78.317 44.541 -8.646 5.375 2.265 HN22 GTG 61
GTG "H5'1" 1H5* H 0 0 N N N -31.717 83.393 38.868 -5.508 -2.685 0.227 "H5'1" GTG 62
GTG "H5'2" 2H5* H 0 0 N N N -31.982 84.976 39.243 -5.246 -3.338 1.862 "H5'2" GTG 63
GTG "H4'" H4* H 0 1 N N N -30.622 85.026 41.088 -4.869 -0.984 2.681 "H4'" GTG 64
GTG "H3'" H3* H 0 1 N N N -30.624 82.904 39.093 -7.373 -2.206 1.811 "H3'" GTG 65
GTG "HO3'" *HO3 H 0 0 N N N -28.505 83.318 38.171 -8.084 -1.062 3.783 "HO3'" GTG 66
GTG "H2'" H2* H 0 1 N N N -29.161 81.419 40.350 -7.987 -0.459 0.362 "H2'" GTG 67
GTG "HO2'" *HO2 H 0 0 N N N -27.145 82.275 40.842 -9.300 0.060 2.328 "HO2'" GTG 68
GTG "H1'" H1* H 0 1 N N N -28.492 83.006 42.592 -6.122 1.443 1.891 "H1'" GTG 69
GTG HOG2 2HOG H 0 0 N N N -34.802 87.989 45.022 3.912 -3.879 1.169 HOG2 GTG 70
GTG H5B1 1H5B H 0 0 N N N -37.188 86.436 46.130 5.549 -2.473 -1.150 H5B1 GTG 71
GTG H5B2 2H5B H 0 0 N N N -36.519 85.266 47.263 4.707 -2.457 -2.717 H5B2 GTG 72
GTG H4B H4B H 0 1 N N N -38.071 86.928 48.093 4.271 0.005 -2.396 H4B GTG 73
GTG H3B H3B H 0 1 N N N -35.759 88.934 47.525 6.814 -1.313 -2.958 H3B GTG 74
GTG H3BO OH3B H 0 0 N N N -37.499 90.228 46.927 6.919 0.542 -4.459 H3BO GTG 75
GTG H2B H2B H 0 1 N N N -36.173 89.878 49.601 8.014 -0.229 -1.252 H2B GTG 76
GTG H2BO OH2B H 0 0 N N N -38.342 89.878 50.389 8.636 1.083 -3.189 H2BO GTG 77
GTG H1B H1B H 0 1 N N N -37.573 87.747 50.878 5.908 2.005 -1.215 H1B GTG 78
GTG H8B H8B H 0 1 N N N -33.748 88.326 49.864 6.649 -0.419 1.628 H8B GTG 79
GTG H1BN NH1B H 0 0 N N N -34.805 87.315 56.228 9.538 5.313 2.396 H1BN GTG 80
GTG H2B1 1H2B H 0 0 N N N -38.218 86.943 55.205 9.291 6.560 0.434 H2B1 GTG 81
GTG H2B2 2H2B H 0 0 N N N -37.266 87.741 56.305 8.462 5.920 -0.880 H2B2 GTG 82
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GTG PA O1A DOUB N N 1
GTG PA O2A SING N N 2
GTG PA O3A SING N N 3
GTG PA O5D SING N N 4
GTG O2A HOA2 SING N N 5
GTG O3A PB SING N N 6
GTG PB O1B DOUB N N 7
GTG PB O2B SING N N 8
GTG PB O3B SING N N 9
GTG O2B HOB2 SING N N 10
GTG O3B PG SING N N 11
GTG N9A C8A SING Y N 12
GTG N9A C4A SING Y N 13
GTG N9A C1D SING N N 14
GTG C8A N7A DOUB Y N 15
GTG C8A H8 SING N N 16
GTG N7A C7X SING N N 17
GTG N7A C5A SING Y N 18
GTG C7X HC71 SING N N 19
GTG C7X HC72 SING N N 20
GTG C7X HC73 SING N N 21
GTG C5A C6A SING N N 22
GTG C5A C4A DOUB Y N 23
GTG C6A O6A DOUB N N 24
GTG C6A N1A SING N N 25
GTG N1A C2A SING N N 26
GTG N1A HN1 SING N N 27
GTG C2A N2A SING N N 28
GTG C2A N3A DOUB N N 29
GTG N2A HN21 SING N N 30
GTG N2A HN22 SING N N 31
GTG N3A C4A SING N N 32
GTG O5D C5D SING N N 33
GTG C5D C4D SING N N 34
GTG C5D "H5'1" SING N N 35
GTG C5D "H5'2" SING N N 36
GTG C4D O4D SING N N 37
GTG C4D C3D SING N N 38
GTG C4D "H4'" SING N N 39
GTG O4D C1D SING N N 40
GTG C3D O3D SING N N 41
GTG C3D C2D SING N N 42
GTG C3D "H3'" SING N N 43
GTG O3D "HO3'" SING N N 44
GTG C2D O2D SING N N 45
GTG C2D C1D SING N N 46
GTG C2D "H2'" SING N N 47
GTG O2D "HO2'" SING N N 48
GTG C1D "H1'" SING N N 49
GTG PG O1G DOUB N N 50
GTG PG O2G SING N N 51
GTG PG O5E SING N N 52
GTG O2G HOG2 SING N N 53
GTG O5E C5E SING N N 54
GTG C5E C4E SING N N 55
GTG C5E H5B1 SING N N 56
GTG C5E H5B2 SING N N 57
GTG C4E O4E SING N N 58
GTG C4E C3E SING N N 59
GTG C4E H4B SING N N 60
GTG O4E C1E SING N N 61
GTG C3E O3E SING N N 62
GTG C3E C2E SING N N 63
GTG C3E H3B SING N N 64
GTG O3E H3BO SING N N 65
GTG C2E O2E SING N N 66
GTG C2E C1E SING N N 67
GTG C2E H2B SING N N 68
GTG O2E H2BO SING N N 69
GTG C1E N9B SING N N 70
GTG C1E H1B SING N N 71
GTG N9B C8B SING Y N 72
GTG N9B C4B SING Y N 73
GTG C8B N7B DOUB Y N 74
GTG C8B H8B SING N N 75
GTG N7B C5B SING Y N 76
GTG C5B C6B SING N N 77
GTG C5B C4B DOUB Y N 78
GTG C6B O6B DOUB N N 79
GTG C6B N1B SING N N 80
GTG N1B C2B SING N N 81
GTG N1B H1BN SING N N 82
GTG C2B N2B SING N N 83
GTG C2B N3B DOUB N N 84
GTG N2B H2B1 SING N N 85
GTG N2B H2B2 SING N N 86
GTG N3B C4B SING N N 87
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GTG SMILES ACDLabs 10.04 "O=C1NC(=Nc2c1[n+](cn2C3OC(C(O)C3O)COP(=O)(O)OP(=O)(O)OP(=O)(O)OCC6OC(n5cnc4c5N=C(N)NC4=O)C(O)C6O)C)N"
GTG InChI InChI 1.03 "InChI=1S/C21H29N10O18P3/c1-29-5-31(15-9(29)17(37)28-21(23)26-15)19-13(35)11(33)7(47-19)3-45-51(40,41)49-52(42,43)48-50(38,39)44-2-6-10(32)12(34)18(46-6)30-4-24-8-14(30)25-20(22)27-16(8)36/h4-7,10-13,18-19,32-35H,2-3H2,1H3,(H8-,22,23,25,26,27,28,36,37,38,39,40,41,42,43)/p+1/t6-,7-,10-,11-,12-,13-,18-,19-/m1/s1"
GTG InChIKey InChI 1.03 FHHZHGZBHYYWTG-INFSMZHSSA-O
GTG SMILES_CANONICAL CACTVS 3.385 "C[n+]1cn([C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5C(=O)NC(=Nc45)N)[C@@H](O)[C@H]2O)c6N=C(N)NC(=O)c16"
GTG SMILES CACTVS 3.385 "C[n+]1cn([CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5C(=O)NC(=Nc45)N)[CH](O)[CH]2O)c6N=C(N)NC(=O)c16"
GTG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "C[n+]1cn(c2c1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)OP(=O)(O)O[P@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5N=C(NC6=O)N)O)O)O)O"
GTG SMILES "OpenEye OEToolkits" 1.7.5 "C[n+]1cn(c2c1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5N=C(NC6=O)N)O)O)O)O"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GTG "SYSTEMATIC NAME" ACDLabs 10.04 "2-amino-9-[(2R,3R,4S,5R)-5-({[(R)-{[{[(R)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxytetrahydrofuran-2-yl]-7-methyl-6-oxo-6,9-dihydro-1H-purin-7-ium (non-preferred name)"
GTG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2-amino-7-methyl-6-oxo-1H-purin-7-ium-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [[[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl] hydrogen phosphate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GTG "Create component" 2002-11-04 RCSB
GTG "Modify descriptor" 2011-06-04 RCSB
GTG "Modify descriptor" 2012-01-05 RCSB
GTG "Modify coordinates" 2012-01-05 RCSB
GTG "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id GTG
_pdbx_chem_comp_synonyms.name "MRNA CAP ANALOG N7-METHYL GPPPG"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##