data_GV6 # _chem_comp.id GV6 _chem_comp.name "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2S,3S)-2-azanyl-3-methyl-pentanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H25 N6 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-29 _chem_comp.pdbx_modified_date 2021-02-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 460.379 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GV6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7D5C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GV6 N1 N1 N 0 1 Y N N 8.513 7.822 32.696 7.159 -2.090 0.408 N1 GV6 1 GV6 C2 C1 C 0 1 Y N N 7.481 7.643 33.529 6.929 -1.003 1.123 C2 GV6 2 GV6 N3 N2 N 0 1 Y N N 7.496 7.450 34.853 5.782 -0.358 1.079 N3 GV6 3 GV6 C4 C2 C 0 1 Y N N 8.748 7.466 35.329 4.794 -0.785 0.298 C4 GV6 4 GV6 C5 C3 C 0 1 Y N N 9.911 7.645 34.597 4.990 -1.937 -0.483 C5 GV6 5 GV6 C6 C4 C 0 1 Y N N 9.766 7.836 33.206 6.232 -2.591 -0.401 C6 GV6 6 GV6 N7 N3 N 0 1 Y N N 9.146 7.323 36.636 3.519 -0.358 0.029 N7 GV6 7 GV6 C8 C5 C 0 1 Y N N 10.514 7.421 36.619 2.980 -1.224 -0.876 C8 GV6 8 GV6 N9 N4 N 0 1 Y N N 11.022 7.612 35.426 3.845 -2.150 -1.175 N9 GV6 9 GV6 C10 C6 C 0 1 N N R 8.287 7.082 37.786 2.856 0.813 0.608 C10 GV6 10 GV6 C11 C7 C 0 1 N N R 8.543 5.756 38.495 3.215 2.093 -0.189 C11 GV6 11 GV6 C12 C8 C 0 1 N N S 7.903 6.064 39.843 2.010 3.015 0.118 C12 GV6 12 GV6 C13 C9 C 0 1 N N R 8.326 7.517 40.076 0.897 2.046 0.562 C13 GV6 13 GV6 O14 O1 O 0 1 N N N 8.528 8.082 38.760 1.424 0.713 0.458 O14 GV6 14 GV6 N15 N5 N 0 1 N N N 10.790 8.052 32.375 6.482 -3.730 -1.146 N15 GV6 15 GV6 C16 C10 C 0 1 N N N 9.575 7.704 40.900 -0.320 2.198 -0.353 C16 GV6 16 GV6 O17 O2 O 0 1 N N N 10.663 7.027 40.243 -1.387 1.383 0.134 O17 GV6 17 GV6 P18 P1 P 0 1 N N N 12.133 7.000 40.827 -2.825 1.296 -0.586 P18 GV6 18 GV6 O19 O3 O 0 1 N N N 13.015 6.394 39.772 -3.389 2.658 -0.725 O19 GV6 19 GV6 O20 O4 O 0 1 N N N 12.055 5.938 42.051 -3.817 0.392 0.303 O20 GV6 20 GV6 O21 O5 O 0 1 N N N 7.924 4.661 37.829 4.432 2.668 0.290 O21 GV6 21 GV6 O22 O6 O 0 1 N N N 6.486 5.974 39.733 2.332 3.924 1.173 O22 GV6 22 GV6 O23 O7 O 0 1 N N N 12.511 8.292 41.408 -2.656 0.634 -2.044 O23 GV6 23 GV6 C24 C11 C 0 1 N N N 11.923 4.556 42.147 -5.092 0.304 -0.107 C24 GV6 24 GV6 C25 C12 C 0 1 N N S 11.812 3.961 43.555 -6.079 -0.525 0.674 C25 GV6 25 GV6 O26 O8 O 0 1 N N N 11.877 3.903 41.142 -5.449 0.889 -1.102 O26 GV6 26 GV6 N27 N6 N 0 1 N N N 12.324 4.886 44.548 -7.446 -0.101 0.342 N27 GV6 27 GV6 C28 C13 C 0 1 N N S 10.379 3.460 43.845 -5.902 -2.001 0.316 C28 GV6 28 GV6 C29 C14 C 0 1 N N N 9.323 4.522 43.510 -6.904 -2.843 1.109 C29 GV6 29 GV6 C30 C15 C 0 1 N N N 7.897 4.053 43.605 -6.812 -4.302 0.660 C30 GV6 30 GV6 C31 C16 C 0 1 N N N 10.263 2.971 45.289 -4.478 -2.443 0.662 C31 GV6 31 GV6 H1 H1 H 0 1 N N N 6.503 7.656 33.070 7.710 -0.629 1.768 H1 GV6 32 GV6 H2 H2 H 0 1 N N N 11.119 7.347 37.510 1.983 -1.153 -1.285 H2 GV6 33 GV6 H3 H3 H 0 1 N N N 7.234 7.111 37.469 3.127 0.926 1.658 H3 GV6 34 GV6 H4 H4 H 0 1 N N N 9.624 5.596 38.618 3.280 1.881 -1.257 H4 GV6 35 GV6 H5 H5 H 0 1 N N N 8.306 5.408 40.629 1.708 3.559 -0.777 H5 GV6 36 GV6 H6 H6 H 0 1 N N N 7.497 8.041 40.574 0.613 2.255 1.593 H6 GV6 37 GV6 H7 H7 H 0 1 N N N 10.444 8.178 31.445 7.343 -4.172 -1.081 H7 GV6 38 GV6 H8 H8 H 0 1 N N N 11.284 8.873 32.661 5.797 -4.086 -1.733 H8 GV6 39 GV6 H9 H9 H 0 1 N N N 9.804 8.776 40.988 -0.637 3.241 -0.367 H9 GV6 40 GV6 H10 H10 H 0 1 N N N 9.425 7.278 41.903 -0.056 1.885 -1.363 H10 GV6 41 GV6 H11 H11 H 0 1 N N N 8.108 3.858 38.302 4.699 3.471 -0.178 H11 GV6 42 GV6 H12 H12 H 0 1 N N N 6.090 6.166 40.575 3.067 4.519 0.969 H12 GV6 43 GV6 H13 H13 H 0 1 N N N 13.320 8.594 41.011 -2.290 -0.261 -2.029 H13 GV6 44 GV6 H14 H14 H 0 1 N N N 12.459 3.072 43.569 -5.905 -0.386 1.741 H14 GV6 45 GV6 H15 H15 H 0 1 N N N 12.242 4.478 45.457 -7.632 -0.219 -0.643 H15 GV6 46 GV6 H16 H16 H 0 1 N N N 13.286 5.082 44.356 -8.124 -0.597 0.900 H16 GV6 47 GV6 H18 H18 H 0 1 N N N 10.196 2.596 43.189 -6.076 -2.140 -0.751 H18 GV6 48 GV6 H19 H19 H 0 1 N N N 9.501 4.867 42.481 -6.674 -2.774 2.172 H19 GV6 49 GV6 H20 H20 H 0 1 N N N 9.453 5.364 44.206 -7.913 -2.470 0.931 H20 GV6 50 GV6 H21 H21 H 0 1 N N N 7.220 4.881 43.348 -7.526 -4.902 1.226 H21 GV6 51 GV6 H22 H22 H 0 1 N N N 7.738 3.219 42.906 -7.042 -4.371 -0.403 H22 GV6 52 GV6 H23 H23 H 0 1 N N N 7.690 3.715 44.631 -5.804 -4.675 0.839 H23 GV6 53 GV6 H24 H24 H 0 1 N N N 11.037 2.214 45.483 -4.305 -2.305 1.729 H24 GV6 54 GV6 H25 H25 H 0 1 N N N 10.400 3.820 45.975 -4.352 -3.495 0.407 H25 GV6 55 GV6 H26 H26 H 0 1 N N N 9.269 2.528 45.447 -3.765 -1.844 0.097 H26 GV6 56 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GV6 N15 C6 SING N N 1 GV6 N1 C6 DOUB Y N 2 GV6 N1 C2 SING Y N 3 GV6 C6 C5 SING Y N 4 GV6 C2 N3 DOUB Y N 5 GV6 C5 C4 DOUB Y N 6 GV6 C5 N9 SING Y N 7 GV6 N3 C4 SING Y N 8 GV6 C4 N7 SING Y N 9 GV6 N9 C8 DOUB Y N 10 GV6 C8 N7 SING Y N 11 GV6 N7 C10 SING N N 12 GV6 C10 C11 SING N N 13 GV6 C10 O14 SING N N 14 GV6 O21 C11 SING N N 15 GV6 C11 C12 SING N N 16 GV6 O14 C13 SING N N 17 GV6 O22 C12 SING N N 18 GV6 O19 P18 DOUB N N 19 GV6 C12 C13 SING N N 20 GV6 C13 C16 SING N N 21 GV6 O17 P18 SING N N 22 GV6 O17 C16 SING N N 23 GV6 P18 O23 SING N N 24 GV6 P18 O20 SING N N 25 GV6 O26 C24 DOUB N N 26 GV6 O20 C24 SING N N 27 GV6 C24 C25 SING N N 28 GV6 C29 C30 SING N N 29 GV6 C29 C28 SING N N 30 GV6 C25 C28 SING N N 31 GV6 C25 N27 SING N N 32 GV6 C28 C31 SING N N 33 GV6 C2 H1 SING N N 34 GV6 C8 H2 SING N N 35 GV6 C10 H3 SING N N 36 GV6 C11 H4 SING N N 37 GV6 C12 H5 SING N N 38 GV6 C13 H6 SING N N 39 GV6 N15 H7 SING N N 40 GV6 N15 H8 SING N N 41 GV6 C16 H9 SING N N 42 GV6 C16 H10 SING N N 43 GV6 O21 H11 SING N N 44 GV6 O22 H12 SING N N 45 GV6 O23 H13 SING N N 46 GV6 C25 H14 SING N N 47 GV6 N27 H15 SING N N 48 GV6 N27 H16 SING N N 49 GV6 C28 H18 SING N N 50 GV6 C29 H19 SING N N 51 GV6 C29 H20 SING N N 52 GV6 C30 H21 SING N N 53 GV6 C30 H22 SING N N 54 GV6 C30 H23 SING N N 55 GV6 C31 H24 SING N N 56 GV6 C31 H25 SING N N 57 GV6 C31 H26 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GV6 InChI InChI 1.03 "InChI=1S/C16H25N6O8P/c1-3-7(2)9(17)16(25)30-31(26,27)28-4-8-11(23)12(24)15(29-8)22-6-21-10-13(18)19-5-20-14(10)22/h5-9,11-12,15,23-24H,3-4,17H2,1-2H3,(H,26,27)(H2,18,19,20)/t7-,8+,9-,11+,12+,15+/m0/s1" GV6 InChIKey InChI 1.03 ACZWYNUJBRLCEC-XATJSACLSA-N GV6 SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)[C@H](N)C(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" GV6 SMILES CACTVS 3.385 "CC[CH](C)[CH](N)C(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" GV6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)[C@@H](C(=O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)N" GV6 SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)C(C(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)N" # _pdbx_chem_comp_identifier.comp_id GV6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2~{S},3~{S})-2-azanyl-3-methyl-pentanoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GV6 "Create component" 2020-09-29 PDBJ GV6 "Initial release" 2021-02-24 RCSB ##