data_GVU # _chem_comp.id GVU _chem_comp.name "(2E,4S,5S,6E,8E)-10-[(2S,3R,6S,8R,9S)-3-butyl-9-methyl-2-[(1E,3E)-3-methyl-5-oxidanyl-5-oxidanylidene-penta-1,3-dienyl]-3-(4-oxidanyl-4-oxidanylidene-butanoyl)oxy-1,7-dioxaspiro[5.5]undecan-8-yl]-4,8-dimethyl-5-oxidanyl-deca-2,6,8-trienoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H52 O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-29 _chem_comp.pdbx_modified_date 2021-02-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 660.791 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GVU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7D5C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GVU C13 C1 C 0 1 N N N 15.192 -1.851 38.778 2.671 3.299 1.260 C13 GVU 1 GVU C12 C2 C 0 1 N N N 12.118 -1.266 39.017 1.579 5.960 0.571 C12 GVU 2 GVU C10 C3 C 0 1 N N S 16.519 2.719 39.181 -1.082 1.283 0.091 C10 GVU 3 GVU C9 C4 C 0 1 N N R 17.468 3.271 38.114 -1.742 0.209 0.960 C9 GVU 4 GVU C1 C5 C 0 1 N N S 15.024 1.589 37.445 -0.964 2.811 1.936 C1 GVU 5 GVU C2 C6 C 0 1 N N N 13.587 1.687 36.967 -1.353 4.228 2.364 C2 GVU 6 GVU C3 C7 C 0 1 N N N 12.627 0.912 37.872 -0.646 5.240 1.457 C3 GVU 7 GVU C8 C8 C 0 1 N N N 17.398 2.290 36.949 -1.276 0.380 2.409 C8 GVU 8 GVU C7 C9 C 0 1 N N N 16.001 2.038 36.373 -1.617 1.798 2.879 C7 GVU 9 GVU C4 C10 C 0 1 N N S 13.095 -0.521 38.111 0.866 5.005 1.531 C4 GVU 10 GVU C5 C11 C 0 1 N N R 14.517 -0.479 38.663 1.169 3.559 1.132 C5 GVU 11 GVU O6 O1 O 0 1 N N N 15.360 0.231 37.733 0.457 2.669 1.995 O6 GVU 12 GVU O11 O2 O 0 1 N N N 15.188 2.379 38.625 -1.413 2.576 0.600 O11 GVU 13 GVU C14 C12 C 0 1 N N N 15.015 -2.485 40.126 2.898 1.884 1.727 C14 GVU 14 GVU C15 C13 C 0 1 N N N 15.549 -3.627 40.567 3.539 1.021 0.945 C15 GVU 15 GVU C16 C14 C 0 1 N N N 15.195 -4.061 41.909 3.464 -0.421 1.225 C16 GVU 16 GVU C17 C15 C 0 1 N N N 16.494 -4.486 39.771 4.343 1.520 -0.228 C17 GVU 17 GVU C18 C16 C 0 1 N N N 15.440 -5.217 42.493 3.660 -1.299 0.248 C18 GVU 18 GVU C19 C17 C 0 1 N N S 15.056 -5.559 43.900 3.473 -2.772 0.508 C19 GVU 19 GVU C20 C18 C 0 1 N N S 13.813 -6.466 43.960 2.473 -3.345 -0.498 C20 GVU 20 GVU C21 C19 C 0 1 N N N 13.987 -7.688 43.102 2.100 -4.747 -0.092 C21 GVU 21 GVU C22 C20 C 0 1 N N N 14.110 -8.881 43.651 0.831 -5.047 0.176 C22 GVU 22 GVU O23 O3 O 0 1 N N N 16.142 -6.206 44.565 4.727 -3.443 0.369 O23 GVU 23 GVU C24 C21 C 0 1 N N N 12.562 -5.701 43.526 3.107 -3.369 -1.890 C24 GVU 24 GVU C25 C22 C 0 1 N N N 16.999 1.528 39.964 0.414 1.101 0.116 C25 GVU 25 GVU C26 C23 C 0 1 N N N 17.618 1.589 41.129 1.049 0.640 -0.964 C26 GVU 26 GVU C27 C24 C 0 1 N N N 18.101 0.438 41.888 2.177 1.385 -1.522 C27 GVU 27 GVU C28 C25 C 0 1 N N N 18.481 0.593 43.170 2.814 0.924 -2.622 C28 GVU 28 GVU C29 C26 C 0 1 N N N 18.240 -0.886 41.182 2.630 2.667 -0.871 C29 GVU 29 GVU C30 C27 C 0 1 N N N 18.910 3.394 38.628 -1.338 -1.178 0.454 C30 GVU 30 GVU O31 O4 O 0 1 N N N 16.912 4.551 37.624 -3.185 0.350 0.893 O31 GVU 31 GVU C32 C28 C 0 1 N N N 19.894 4.128 37.720 -1.902 -2.247 1.393 C32 GVU 32 GVU C33 C29 C 0 1 N N N 21.341 3.989 38.158 -1.614 -3.634 0.816 C33 GVU 33 GVU C34 C30 C 0 1 N N N 21.854 5.173 38.912 -2.177 -4.703 1.754 C34 GVU 34 GVU C35 C31 C 0 1 N N N 17.144 5.741 38.199 -3.764 0.127 -0.298 C35 GVU 35 GVU C36 C32 C 0 1 N N N 17.044 6.844 37.174 -5.242 0.363 -0.473 C36 GVU 36 GVU C37 C33 C 0 1 N N N 18.282 7.733 37.106 -5.644 0.037 -1.913 C37 GVU 37 GVU O38 O5 O 0 1 N N N 17.389 5.908 39.364 -3.100 -0.262 -1.229 O38 GVU 38 GVU C39 C34 C 0 1 N N N 14.284 -10.112 42.849 0.467 -6.414 0.572 C39 GVU 39 GVU O40 O6 O 0 1 N N N 14.341 -10.077 41.619 1.324 -7.272 0.655 O40 GVU 40 GVU O41 O7 O 0 1 N N N 14.379 -11.212 43.535 -0.818 -6.718 0.844 O41 GVU 41 GVU C42 C35 C 0 1 N N N 18.998 -0.342 44.193 3.500 1.825 -3.475 C42 GVU 42 GVU O43 O8 O 0 1 N N N 19.645 0.074 45.138 4.053 1.381 -4.623 O43 GVU 43 GVU O44 O9 O 0 1 N N N 18.862 -1.611 43.947 3.590 3.000 -3.172 O44 GVU 44 GVU C45 C36 C 0 1 N N N 18.220 8.811 36.057 -7.122 0.273 -2.088 C45 GVU 45 GVU O46 O10 O 0 1 N N N 17.184 9.231 35.578 -7.786 0.662 -1.156 O46 GVU 46 GVU O47 O11 O 0 1 N N N 19.408 9.273 35.711 -7.701 0.051 -3.278 O47 GVU 47 GVU H1 H1 H 0 1 N N N 14.759 -2.518 38.018 3.148 3.442 0.290 H1 GVU 48 GVU H2 H2 H 0 1 N N N 16.268 -1.728 38.588 3.101 3.993 1.982 H2 GVU 49 GVU H3 H3 H 0 1 N N N 12.475 -2.294 39.175 1.357 6.990 0.851 H3 GVU 50 GVU H4 H4 H 0 1 N N N 12.049 -0.749 39.986 2.654 5.793 0.624 H4 GVU 51 GVU H5 H5 H 0 1 N N N 11.125 -1.291 38.544 1.232 5.779 -0.447 H5 GVU 52 GVU H6 H6 H 0 1 N N N 16.364 3.531 39.907 -1.441 1.192 -0.934 H6 GVU 53 GVU H7 H7 H 0 1 N N N 13.288 2.746 36.956 -2.432 4.352 2.275 H7 GVU 54 GVU H8 H8 H 0 1 N N N 13.523 1.277 35.948 -1.051 4.392 3.398 H8 GVU 55 GVU H9 H9 H 0 1 N N N 12.557 1.429 38.841 -0.986 5.110 0.430 H9 GVU 56 GVU H10 H10 H 0 1 N N N 11.635 0.887 37.398 -0.875 6.252 1.793 H10 GVU 57 GVU H11 H11 H 0 1 N N N 17.799 1.326 37.295 -1.784 -0.346 3.044 H11 GVU 58 GVU H12 H12 H 0 1 N N N 18.031 2.682 36.139 -0.199 0.224 2.467 H12 GVU 59 GVU H13 H13 H 0 1 N N N 15.629 2.969 35.919 -1.240 1.947 3.891 H13 GVU 60 GVU H14 H14 H 0 1 N N N 16.069 1.256 35.602 -2.698 1.935 2.869 H14 GVU 61 GVU H15 H15 H 0 1 N N N 13.121 -1.038 37.140 1.213 5.184 2.548 H15 GVU 62 GVU H16 H16 H 0 1 N N N 14.517 0.014 39.646 0.858 3.393 0.101 H16 GVU 63 GVU H17 H17 H 0 1 N N N 14.381 -1.956 40.822 2.540 1.571 2.696 H17 GVU 64 GVU H18 H18 H 0 1 N N N 14.659 -3.339 42.508 3.250 -0.766 2.226 H18 GVU 65 GVU H19 H19 H 0 1 N N N 16.782 -5.365 40.367 5.367 1.713 0.089 H19 GVU 66 GVU H20 H20 H 0 1 N N N 15.998 -4.816 38.846 4.342 0.766 -1.016 H20 GVU 67 GVU H21 H21 H 0 1 N N N 17.393 -3.905 39.518 3.899 2.441 -0.607 H21 GVU 68 GVU H22 H22 H 0 1 N N N 15.954 -5.971 41.916 3.954 -0.957 -0.734 H22 GVU 69 GVU H23 H23 H 0 1 N N N 14.815 -4.625 44.428 3.094 -2.916 1.520 H23 GVU 70 GVU H24 H24 H 0 1 N N N 13.675 -6.788 45.003 1.579 -2.721 -0.517 H24 GVU 71 GVU H25 H25 H 0 1 N N N 14.012 -7.588 42.027 2.862 -5.509 -0.019 H25 GVU 72 GVU H26 H26 H 0 1 N N N 14.083 -8.962 44.728 0.069 -4.285 0.103 H26 GVU 73 GVU H27 H27 H 0 1 N N N 15.888 -6.418 45.455 5.087 -3.421 -0.529 H27 GVU 74 GVU H28 H28 H 0 1 N N N 12.440 -4.808 44.157 2.367 -3.693 -2.621 H28 GVU 75 GVU H29 H29 H 0 1 N N N 12.666 -5.395 42.475 3.458 -2.369 -2.147 H29 GVU 76 GVU H30 H30 H 0 1 N N N 11.680 -6.349 43.634 3.949 -4.061 -1.894 H30 GVU 77 GVU H31 H31 H 0 1 N N N 16.824 0.549 39.542 0.972 1.343 1.009 H31 GVU 78 GVU H32 H32 H 0 1 N N N 17.780 2.568 41.555 0.729 -0.282 -1.425 H32 GVU 79 GVU H33 H33 H 0 1 N N N 18.390 1.609 43.525 2.801 -0.132 -2.851 H33 GVU 80 GVU H34 H34 H 0 1 N N N 18.612 -1.642 41.889 3.173 2.437 0.046 H34 GVU 81 GVU H35 H35 H 0 1 N N N 17.260 -1.199 40.793 3.283 3.210 -1.554 H35 GVU 82 GVU H36 H36 H 0 1 N N N 18.949 -0.784 40.348 1.761 3.281 -0.634 H36 GVU 83 GVU H37 H37 H 0 1 N N N 19.297 2.377 38.787 -1.737 -1.328 -0.549 H37 GVU 84 GVU H38 H38 H 0 1 N N N 18.878 3.929 39.589 -0.251 -1.253 0.428 H38 GVU 85 GVU H39 H39 H 0 1 N N N 19.633 5.197 37.715 -1.431 -2.155 2.371 H39 GVU 86 GVU H40 H40 H 0 1 N N N 19.798 3.722 36.702 -2.978 -2.111 1.493 H40 GVU 87 GVU H41 H41 H 0 1 N N N 21.425 3.102 38.804 -2.084 -3.726 -0.163 H41 GVU 88 GVU H42 H42 H 0 1 N N N 21.964 3.851 37.262 -0.537 -3.770 0.716 H42 GVU 89 GVU H43 H43 H 0 1 N N N 22.903 5.002 39.195 -1.972 -5.692 1.344 H43 GVU 90 GVU H44 H44 H 0 1 N N N 21.787 6.069 38.277 -1.706 -4.612 2.733 H44 GVU 91 GVU H45 H45 H 0 1 N N N 21.249 5.320 39.819 -3.254 -4.568 1.855 H45 GVU 92 GVU H46 H46 H 0 1 N N N 16.178 7.474 37.425 -5.796 -0.278 0.213 H46 GVU 93 GVU H47 H47 H 0 1 N N N 16.890 6.386 36.186 -5.471 1.407 -0.259 H47 GVU 94 GVU H48 H48 H 0 1 N N N 19.152 7.095 36.892 -5.090 0.678 -2.599 H48 GVU 95 GVU H49 H49 H 0 1 N N N 18.413 8.215 38.086 -5.415 -1.007 -2.126 H49 GVU 96 GVU H50 H50 H 0 1 N N N 14.495 -11.946 42.943 -1.009 -7.630 1.100 H50 GVU 97 GVU H51 H51 H 0 1 N N N 20.004 -0.659 45.624 4.431 2.079 -5.174 H51 GVU 98 GVU H52 H52 H 0 1 N N N 19.305 9.954 35.057 -8.651 0.216 -3.342 H52 GVU 99 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GVU O46 C45 DOUB N N 1 GVU O47 C45 SING N N 2 GVU C45 C37 SING N N 3 GVU C7 C8 SING N N 4 GVU C7 C1 SING N N 5 GVU C8 C9 SING N N 6 GVU C2 C1 SING N N 7 GVU C2 C3 SING N N 8 GVU C37 C36 SING N N 9 GVU C36 C35 SING N N 10 GVU C1 O6 SING N N 11 GVU C1 O11 SING N N 12 GVU O31 C9 SING N N 13 GVU O31 C35 SING N N 14 GVU C32 C33 SING N N 15 GVU C32 C30 SING N N 16 GVU O6 C5 SING N N 17 GVU C3 C4 SING N N 18 GVU C4 C5 SING N N 19 GVU C4 C12 SING N N 20 GVU C9 C30 SING N N 21 GVU C9 C10 SING N N 22 GVU C33 C34 SING N N 23 GVU C35 O38 DOUB N N 24 GVU O11 C10 SING N N 25 GVU C5 C13 SING N N 26 GVU C13 C14 SING N N 27 GVU C10 C25 SING N N 28 GVU C17 C15 SING N N 29 GVU C25 C26 DOUB N E 30 GVU C14 C15 DOUB N E 31 GVU C15 C16 SING N N 32 GVU C26 C27 SING N N 33 GVU C29 C27 SING N N 34 GVU O40 C39 DOUB N N 35 GVU C27 C28 DOUB N E 36 GVU C16 C18 DOUB N E 37 GVU C18 C19 SING N N 38 GVU C39 O41 SING N N 39 GVU C39 C22 SING N N 40 GVU C21 C22 DOUB N E 41 GVU C21 C20 SING N N 42 GVU C28 C42 SING N N 43 GVU C24 C20 SING N N 44 GVU C19 C20 SING N N 45 GVU C19 O23 SING N N 46 GVU O44 C42 DOUB N N 47 GVU C42 O43 SING N N 48 GVU C13 H1 SING N N 49 GVU C13 H2 SING N N 50 GVU C12 H3 SING N N 51 GVU C12 H4 SING N N 52 GVU C12 H5 SING N N 53 GVU C10 H6 SING N N 54 GVU C2 H7 SING N N 55 GVU C2 H8 SING N N 56 GVU C3 H9 SING N N 57 GVU C3 H10 SING N N 58 GVU C8 H11 SING N N 59 GVU C8 H12 SING N N 60 GVU C7 H13 SING N N 61 GVU C7 H14 SING N N 62 GVU C4 H15 SING N N 63 GVU C5 H16 SING N N 64 GVU C14 H17 SING N N 65 GVU C16 H18 SING N N 66 GVU C17 H19 SING N N 67 GVU C17 H20 SING N N 68 GVU C17 H21 SING N N 69 GVU C18 H22 SING N N 70 GVU C19 H23 SING N N 71 GVU C20 H24 SING N N 72 GVU C21 H25 SING N N 73 GVU C22 H26 SING N N 74 GVU O23 H27 SING N N 75 GVU C24 H28 SING N N 76 GVU C24 H29 SING N N 77 GVU C24 H30 SING N N 78 GVU C25 H31 SING N N 79 GVU C26 H32 SING N N 80 GVU C28 H33 SING N N 81 GVU C29 H34 SING N N 82 GVU C29 H35 SING N N 83 GVU C29 H36 SING N N 84 GVU C30 H37 SING N N 85 GVU C30 H38 SING N N 86 GVU C32 H39 SING N N 87 GVU C32 H40 SING N N 88 GVU C33 H41 SING N N 89 GVU C33 H42 SING N N 90 GVU C34 H43 SING N N 91 GVU C34 H44 SING N N 92 GVU C34 H45 SING N N 93 GVU C36 H46 SING N N 94 GVU C36 H47 SING N N 95 GVU C37 H48 SING N N 96 GVU C37 H49 SING N N 97 GVU O41 H50 SING N N 98 GVU O43 H51 SING N N 99 GVU O47 H52 SING N N 100 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GVU InChI InChI 1.03 "InChI=1S/C36H52O11/c1-6-7-19-35(47-34(44)17-16-32(40)41)21-22-36(46-30(35)14-10-25(3)23-33(42)43)20-18-27(5)29(45-36)13-9-24(2)8-12-28(37)26(4)11-15-31(38)39/h8-12,14-15,23,26-30,37H,6-7,13,16-22H2,1-5H3,(H,38,39)(H,40,41)(H,42,43)/b12-8+,14-10+,15-11+,24-9+,25-23+/t26-,27-,28-,29+,30-,35+,36-/m0/s1" GVU InChIKey InChI 1.03 ZESGNAJSBDILTB-OXVOKJAASA-N GVU SMILES_CANONICAL CACTVS 3.385 "CCCC[C@]1(CC[C@]2(CC[C@H](C)[C@@H](C\C=C(C)\C=C\[C@H](O)[C@@H](C)\C=C\C(O)=O)O2)O[C@H]1\C=C\C(C)=C\C(O)=O)OC(=O)CCC(O)=O" GVU SMILES CACTVS 3.385 "CCCC[C]1(CC[C]2(CC[CH](C)[CH](CC=C(C)C=C[CH](O)[CH](C)C=CC(O)=O)O2)O[CH]1C=CC(C)=CC(O)=O)OC(=O)CCC(O)=O" GVU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC[C@]1(CC[C@]2(CC[C@@H]([C@H](O2)C/C=C(\C)/C=C/[C@@H]([C@@H](C)/C=C/C(=O)O)O)C)O[C@H]1/C=C/C(=C/C(=O)O)/C)OC(=O)CCC(=O)O" GVU SMILES "OpenEye OEToolkits" 2.0.7 "CCCCC1(CCC2(CCC(C(O2)CC=C(C)C=CC(C(C)C=CC(=O)O)O)C)OC1C=CC(=CC(=O)O)C)OC(=O)CCC(=O)O" # _pdbx_chem_comp_identifier.comp_id GVU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{E},4~{S},5~{S},6~{E},8~{E})-10-[(2~{S},3~{R},6~{S},8~{R},9~{S})-3-butyl-9-methyl-2-[(1~{E},3~{E})-3-methyl-5-oxidanyl-5-oxidanylidene-penta-1,3-dienyl]-3-(4-oxidanyl-4-oxidanylidene-butanoyl)oxy-1,7-dioxaspiro[5.5]undecan-8-yl]-4,8-dimethyl-5-oxidanyl-deca-2,6,8-trienoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GVU "Create component" 2020-09-29 PDBJ GVU "Initial release" 2021-02-24 RCSB ##