data_GVX
#
_chem_comp.id GVX
_chem_comp.name "L-gamma-glutamyl-S-[(2-phenylethyl)carbamothioyl]-L-cysteinylglycine"
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H26 N4 O6 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-05-05
_chem_comp.pdbx_modified_date 2016-10-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 470.563
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code GVX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5JCW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GVX O01 O1 O 0 1 N N N 18.519 -3.400 11.023 -6.911 4.488 -1.442 O01 GVX 1
GVX C02 C1 C 0 1 N N N 18.993 -2.978 9.934 -7.068 3.759 -0.326 C02 GVX 2
GVX O03 O2 O 0 1 N N N 18.587 -3.482 8.821 -8.176 3.439 0.036 O03 GVX 3
GVX C04 C2 C 0 1 N N S 20.030 -1.861 9.972 -5.863 3.339 0.475 C04 GVX 4
GVX N05 N1 N 0 1 N N N 19.892 -1.072 11.149 -6.279 2.993 1.841 N05 GVX 5
GVX C06 C3 C 0 1 N N N 21.391 -2.517 9.987 -5.211 2.121 -0.183 C06 GVX 6
GVX C07 C4 C 0 1 N N N 21.697 -3.053 8.538 -3.919 1.771 0.558 C07 GVX 7
GVX C08 C5 C 0 1 N N N 23.109 -3.620 8.410 -3.277 0.572 -0.091 C08 GVX 8
GVX O09 O3 O 0 1 N N N 23.928 -3.549 9.328 -3.802 0.048 -1.051 O09 GVX 9
GVX N10 N2 N 0 1 N N N 23.469 -4.235 7.159 -2.121 0.081 0.396 N10 GVX 10
GVX C11 C6 C 0 1 N N R 24.749 -4.816 6.981 -1.497 -1.085 -0.234 C11 GVX 11
GVX C12 C7 C 0 1 N N N 25.357 -4.288 5.668 -2.102 -2.345 0.330 C12 GVX 12
GVX O13 O4 O 0 1 N N N 24.634 -4.046 4.738 -2.968 -2.276 1.176 O13 GVX 13
GVX N14 N3 N 0 1 N N N 26.772 -4.085 5.542 -1.679 -3.549 -0.105 N14 GVX 14
GVX C15 C8 C 0 1 N N N 27.276 -3.628 4.270 -2.267 -4.773 0.444 C15 GVX 15
GVX C16 C9 C 0 1 N N N 27.745 -2.203 4.275 -1.625 -5.973 -0.204 C16 GVX 16
GVX O17 O5 O 0 1 N N N 27.473 -1.430 5.274 -2.009 -7.211 0.146 O17 GVX 17
GVX O18 O6 O 0 1 N N N 28.411 -1.752 3.259 -0.765 -5.821 -1.039 O18 GVX 18
GVX C19 C10 C 0 1 N N N 24.518 -6.305 6.857 0.007 -1.072 0.045 C19 GVX 19
GVX S20 S1 S 0 1 N N N 23.556 -7.009 8.177 0.734 0.441 -0.634 S20 GVX 20
GVX C21 C11 C 0 1 N N N 24.656 -7.596 9.483 2.420 0.199 -0.183 C21 GVX 21
GVX S22 S2 S 0 1 N N N 24.089 -8.536 10.735 2.885 -1.212 0.667 S22 GVX 22
GVX N23 N4 N 0 1 N N N 26.119 -7.371 9.310 3.343 1.126 -0.507 N23 GVX 23
GVX C24 C12 C 0 1 N N N 27.022 -7.419 10.422 4.745 0.925 -0.133 C24 GVX 24
GVX C25 C13 C 0 1 N N N 27.356 -6.024 10.905 5.577 2.115 -0.616 C25 GVX 25
GVX C26 C14 C 0 1 Y N N 28.137 -5.209 9.806 7.020 1.908 -0.231 C26 GVX 26
GVX C27 C15 C 0 1 Y N N 29.158 -5.819 9.090 7.878 1.253 -1.093 C27 GVX 27
GVX C28 C16 C 0 1 Y N N 29.832 -5.103 8.126 9.201 1.064 -0.739 C28 GVX 28
GVX C29 C17 C 0 1 Y N N 29.489 -3.758 7.863 9.665 1.529 0.477 C29 GVX 29
GVX C30 C18 C 0 1 Y N N 28.470 -3.154 8.574 8.806 2.185 1.339 C30 GVX 30
GVX C31 C19 C 0 1 Y N N 27.795 -3.866 9.542 7.485 2.379 0.983 C31 GVX 31
GVX H1 H1 H 0 1 N N N 17.881 -4.082 10.848 -7.714 4.733 -1.922 H1 GVX 32
GVX H2 H2 H 0 1 N N N 19.930 -1.239 9.070 -5.146 4.160 0.511 H2 GVX 33
GVX H3 H3 H 0 1 N N N 20.582 -0.349 11.149 -6.654 3.799 2.320 H3 GVX 34
GVX H4 H4 H 0 1 N N N 18.980 -0.662 11.170 -6.944 2.234 1.836 H4 GVX 35
GVX H6 H6 H 0 1 N N N 21.393 -3.354 10.701 -5.896 1.274 -0.138 H6 GVX 36
GVX H7 H7 H 0 1 N N N 22.155 -1.782 10.281 -4.983 2.350 -1.224 H7 GVX 37
GVX H8 H8 H 0 1 N N N 21.584 -2.224 7.824 -3.234 2.618 0.513 H8 GVX 38
GVX H9 H9 H 0 1 N N N 20.975 -3.847 8.296 -4.147 1.543 1.599 H9 GVX 39
GVX H10 H10 H 0 1 N N N 22.809 -4.252 6.408 -1.701 0.500 1.164 H10 GVX 40
GVX H11 H11 H 0 1 N N N 25.421 -4.598 7.824 -1.667 -1.051 -1.310 H11 GVX 41
GVX H12 H12 H 0 1 N N N 27.388 -4.255 6.311 -0.986 -3.604 -0.781 H12 GVX 42
GVX H13 H13 H 0 1 N N N 26.473 -3.725 3.525 -2.096 -4.807 1.520 H13 GVX 43
GVX H14 H14 H 0 1 N N N 28.122 -4.269 3.983 -3.339 -4.783 0.246 H14 GVX 44
GVX H15 H15 H 0 1 N N N 27.829 -0.564 5.111 -1.569 -7.949 -0.297 H15 GVX 45
GVX H16 H16 H 0 1 N N N 23.993 -6.494 5.909 0.178 -1.106 1.121 H16 GVX 46
GVX H17 H17 H 0 1 N N N 25.497 -6.805 6.840 0.471 -1.940 -0.424 H17 GVX 47
GVX H18 H18 H 0 1 N N N 26.479 -7.182 8.396 3.079 1.926 -0.989 H18 GVX 48
GVX H19 H19 H 0 1 N N N 26.554 -7.982 11.243 4.823 0.844 0.951 H19 GVX 49
GVX H20 H20 H 0 1 N N N 27.948 -7.925 10.112 5.117 0.010 -0.594 H20 GVX 50
GVX H21 H21 H 0 1 N N N 27.980 -6.097 11.808 5.499 2.196 -1.700 H21 GVX 51
GVX H22 H22 H 0 1 N N N 26.422 -5.495 11.147 5.205 3.030 -0.155 H22 GVX 52
GVX H23 H23 H 0 1 N N N 29.422 -6.847 9.288 7.516 0.889 -2.043 H23 GVX 53
GVX H24 H24 H 0 1 N N N 30.628 -5.573 7.567 9.872 0.551 -1.413 H24 GVX 54
GVX H25 H25 H 0 1 N N N 30.023 -3.202 7.107 10.698 1.380 0.753 H25 GVX 55
GVX H26 H26 H 0 1 N N N 28.203 -2.127 8.372 9.169 2.548 2.289 H26 GVX 56
GVX H27 H27 H 0 1 N N N 27.001 -3.394 10.101 6.814 2.892 1.656 H27 GVX 57
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GVX O18 C16 DOUB N N 1
GVX C15 C16 SING N N 2
GVX C15 N14 SING N N 3
GVX C16 O17 SING N N 4
GVX O13 C12 DOUB N N 5
GVX N14 C12 SING N N 6
GVX C12 C11 SING N N 7
GVX C19 C11 SING N N 8
GVX C19 S20 SING N N 9
GVX C11 N10 SING N N 10
GVX N10 C08 SING N N 11
GVX C29 C28 DOUB Y N 12
GVX C29 C30 SING Y N 13
GVX C28 C27 SING Y N 14
GVX S20 C21 SING N N 15
GVX C08 C07 SING N N 16
GVX C08 O09 DOUB N N 17
GVX C07 C06 SING N N 18
GVX C30 C31 DOUB Y N 19
GVX O03 C02 DOUB N N 20
GVX C27 C26 DOUB Y N 21
GVX N23 C21 SING N N 22
GVX N23 C24 SING N N 23
GVX C21 S22 DOUB N N 24
GVX C31 C26 SING Y N 25
GVX C26 C25 SING N N 26
GVX C02 C04 SING N N 27
GVX C02 O01 SING N N 28
GVX C04 C06 SING N N 29
GVX C04 N05 SING N N 30
GVX C24 C25 SING N N 31
GVX O01 H1 SING N N 32
GVX C04 H2 SING N N 33
GVX N05 H3 SING N N 34
GVX N05 H4 SING N N 35
GVX C06 H6 SING N N 36
GVX C06 H7 SING N N 37
GVX C07 H8 SING N N 38
GVX C07 H9 SING N N 39
GVX N10 H10 SING N N 40
GVX C11 H11 SING N N 41
GVX N14 H12 SING N N 42
GVX C15 H13 SING N N 43
GVX C15 H14 SING N N 44
GVX O17 H15 SING N N 45
GVX C19 H16 SING N N 46
GVX C19 H17 SING N N 47
GVX N23 H18 SING N N 48
GVX C24 H19 SING N N 49
GVX C24 H20 SING N N 50
GVX C25 H21 SING N N 51
GVX C25 H22 SING N N 52
GVX C27 H23 SING N N 53
GVX C28 H24 SING N N 54
GVX C29 H25 SING N N 55
GVX C30 H26 SING N N 56
GVX C31 H27 SING N N 57
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GVX SMILES ACDLabs 12.01 "OC(C(CCC(=O)NC(C(=O)NCC(O)=O)CSC(=S)NCCc1ccccc1)N)=O"
GVX InChI InChI 1.03 "InChI=1S/C19H26N4O6S2/c20-13(18(28)29)6-7-15(24)23-14(17(27)22-10-16(25)26)11-31-19(30)21-9-8-12-4-2-1-3-5-12/h1-5,13-14H,6-11,20H2,(H,21,30)(H,22,27)(H,23,24)(H,25,26)(H,28,29)/t13-,14-/m0/s1"
GVX InChIKey InChI 1.03 WSGBVCNCZSZCGE-KBPBESRZSA-N
GVX SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCC(=O)N[C@@H](CSC(=S)NCCc1ccccc1)C(=O)NCC(O)=O)C(O)=O"
GVX SMILES CACTVS 3.385 "N[CH](CCC(=O)N[CH](CSC(=S)NCCc1ccccc1)C(=O)NCC(O)=O)C(O)=O"
GVX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1ccc(cc1)CCNC(=S)SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H](C(=O)O)N"
GVX SMILES "OpenEye OEToolkits" 2.0.4 "c1ccc(cc1)CCNC(=S)SCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GVX "SYSTEMATIC NAME" ACDLabs 12.01 "L-gamma-glutamyl-S-[(2-phenylethyl)carbamothioyl]-L-cysteinylglycine"
GVX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{S})-2-azanyl-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-3-(2-phenylethylcarbamothioylsulfanyl)propan-2-yl]amino]-5-oxidanylidene-pentanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GVX "Create component" 2016-05-05 RCSB
GVX "Initial release" 2016-10-12 RCSB
#