data_GX0 # _chem_comp.id GX0 _chem_comp.name "1-[(4-chlorophenyl)methyl]-2-(pyrrolidin-1-ylmethyl)benzimidazole" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H20 Cl N3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Clemizole _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-29 _chem_comp.pdbx_modified_date 2021-03-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 325.835 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GX0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7D4P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GX0 C7 C1 C 0 1 N N N 162.012 177.958 156.016 0.540 0.669 -1.940 C7 GX0 1 GX0 N2 N1 N 0 1 Y N N 165.544 177.707 155.173 2.648 -1.250 0.251 N2 GX0 2 GX0 C C2 C 0 1 N N N 166.172 174.663 155.021 -1.297 -3.426 -0.824 C GX0 3 GX0 N N2 N 0 1 N N N 164.792 174.877 154.543 -0.328 -2.468 -0.234 N GX0 4 GX0 CL CL1 CL 0 0 N N N 161.375 177.949 162.080 -4.473 2.195 1.000 CL GX0 5 GX0 C1 C3 C 0 1 N N N 164.166 173.552 154.318 0.067 -3.044 1.070 C1 GX0 6 GX0 N1 N3 N 0 1 Y N N 163.422 178.149 155.680 1.526 0.152 -0.988 N1 GX0 7 GX0 C2 C4 C 0 1 N N N 166.556 173.259 154.572 -2.138 -3.881 0.395 C2 GX0 8 GX0 C3 C5 C 0 1 N N N 165.253 172.489 154.416 -1.088 -3.953 1.530 C3 GX0 9 GX0 C4 C6 C 0 1 N N N 164.012 175.682 155.503 0.840 -2.295 -1.108 C4 GX0 10 GX0 C5 C7 C 0 1 Y N N 164.325 177.167 155.448 1.676 -1.146 -0.608 C5 GX0 11 GX0 C6 C8 C 0 1 Y N N 164.028 179.342 155.560 2.476 0.891 -0.312 C6 GX0 12 GX0 C8 C9 C 0 1 Y N N 165.437 179.052 155.219 3.188 -0.025 0.480 C8 GX0 13 GX0 C9 C10 C 0 1 Y N N 161.852 177.941 157.521 -0.718 1.051 -1.203 C9 GX0 14 GX0 C10 C11 C 0 1 Y N N 163.616 180.671 155.677 2.812 2.238 -0.282 C10 GX0 15 GX0 C11 C12 C 0 1 Y N N 166.318 180.107 155.024 4.230 0.432 1.291 C11 GX0 16 GX0 C12 C13 C 0 1 Y N N 164.532 181.702 155.475 3.843 2.666 0.526 C12 GX0 17 GX0 C13 C14 C 0 1 Y N N 165.860 181.418 155.155 4.547 1.761 1.308 C13 GX0 18 GX0 C14 C15 C 0 1 Y N N 161.262 179.031 158.157 -0.865 2.334 -0.708 C14 GX0 19 GX0 C15 C16 C 0 1 Y N N 162.305 176.854 158.269 -1.725 0.122 -1.026 C15 GX0 20 GX0 C16 C17 C 0 1 Y N N 161.115 179.034 159.540 -2.018 2.686 -0.032 C16 GX0 21 GX0 C17 C18 C 0 1 Y N N 162.160 176.856 159.654 -2.879 0.472 -0.350 C17 GX0 22 GX0 C18 C19 C 0 1 Y N N 161.565 177.947 160.290 -3.024 1.754 0.150 C18 GX0 23 GX0 H1 H1 H 0 1 N N N 161.419 178.782 155.593 0.946 1.545 -2.445 H1 GX0 24 GX0 H2 H2 H 0 1 N N N 161.661 177.002 155.599 0.308 -0.100 -2.678 H2 GX0 25 GX0 H3 H3 H 0 1 N N N 166.851 175.406 154.576 -1.927 -2.931 -1.562 H3 GX0 26 GX0 H4 H4 H 0 1 N N N 166.213 174.739 156.118 -0.777 -4.274 -1.270 H4 GX0 27 GX0 H6 H6 H 0 1 N N N 163.705 173.523 153.320 0.979 -3.631 0.958 H6 GX0 28 GX0 H7 H7 H 0 1 N N N 163.396 173.369 155.082 0.223 -2.245 1.795 H7 GX0 29 GX0 H8 H8 H 0 1 N N N 167.194 172.779 155.328 -2.908 -3.145 0.629 H8 GX0 30 GX0 H9 H9 H 0 1 N N N 167.092 173.299 153.612 -2.584 -4.859 0.213 H9 GX0 31 GX0 H10 H10 H 0 1 N N N 165.081 171.842 155.289 -0.738 -4.977 1.653 H10 GX0 32 GX0 H11 H11 H 0 1 N N N 165.275 171.875 153.503 -1.512 -3.582 2.464 H11 GX0 33 GX0 H12 H12 H 0 1 N N N 162.943 175.544 155.285 1.436 -3.207 -1.103 H12 GX0 34 GX0 H13 H13 H 0 1 N N N 164.229 175.318 156.518 0.505 -2.085 -2.124 H13 GX0 35 GX0 H14 H14 H 0 1 N N N 162.590 180.900 155.924 2.268 2.946 -0.889 H14 GX0 36 GX0 H15 H15 H 0 1 N N N 167.350 179.914 154.773 4.784 -0.264 1.905 H15 GX0 37 GX0 H16 H16 H 0 1 N N N 164.211 182.729 155.567 4.106 3.713 0.550 H16 GX0 38 GX0 H17 H17 H 0 1 N N N 166.551 182.234 155.005 5.353 2.111 1.936 H17 GX0 39 GX0 H18 H18 H 0 1 N N N 160.919 179.874 157.576 -0.079 3.061 -0.850 H18 GX0 40 GX0 H19 H19 H 0 1 N N N 162.767 176.012 157.775 -1.611 -0.879 -1.416 H19 GX0 41 GX0 H20 H20 H 0 1 N N N 160.653 179.877 160.033 -2.133 3.687 0.356 H20 GX0 42 GX0 H21 H21 H 0 1 N N N 162.507 176.015 160.235 -3.666 -0.254 -0.213 H21 GX0 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GX0 C1 C3 SING N N 1 GX0 C1 N SING N N 2 GX0 C3 C2 SING N N 3 GX0 N C SING N N 4 GX0 N C4 SING N N 5 GX0 C2 C SING N N 6 GX0 C11 C13 DOUB Y N 7 GX0 C11 C8 SING Y N 8 GX0 C13 C12 SING Y N 9 GX0 N2 C8 SING Y N 10 GX0 N2 C5 DOUB Y N 11 GX0 C8 C6 DOUB Y N 12 GX0 C5 C4 SING N N 13 GX0 C5 N1 SING Y N 14 GX0 C12 C10 DOUB Y N 15 GX0 C6 C10 SING Y N 16 GX0 C6 N1 SING Y N 17 GX0 N1 C7 SING N N 18 GX0 C7 C9 SING N N 19 GX0 C9 C14 DOUB Y N 20 GX0 C9 C15 SING Y N 21 GX0 C14 C16 SING Y N 22 GX0 C15 C17 DOUB Y N 23 GX0 C16 C18 DOUB Y N 24 GX0 C17 C18 SING Y N 25 GX0 C18 CL SING N N 26 GX0 C7 H1 SING N N 27 GX0 C7 H2 SING N N 28 GX0 C H3 SING N N 29 GX0 C H4 SING N N 30 GX0 C1 H6 SING N N 31 GX0 C1 H7 SING N N 32 GX0 C2 H8 SING N N 33 GX0 C2 H9 SING N N 34 GX0 C3 H10 SING N N 35 GX0 C3 H11 SING N N 36 GX0 C4 H12 SING N N 37 GX0 C4 H13 SING N N 38 GX0 C10 H14 SING N N 39 GX0 C11 H15 SING N N 40 GX0 C12 H16 SING N N 41 GX0 C13 H17 SING N N 42 GX0 C14 H18 SING N N 43 GX0 C15 H19 SING N N 44 GX0 C16 H20 SING N N 45 GX0 C17 H21 SING N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GX0 InChI InChI 1.03 "InChI=1S/C19H20ClN3/c20-16-9-7-15(8-10-16)13-23-18-6-2-1-5-17(18)21-19(23)14-22-11-3-4-12-22/h1-2,5-10H,3-4,11-14H2" GX0 InChIKey InChI 1.03 CJXAEXPPLWQRFR-UHFFFAOYSA-N GX0 SMILES_CANONICAL CACTVS 3.385 "Clc1ccc(Cn2c(CN3CCCC3)nc4ccccc24)cc1" GX0 SMILES CACTVS 3.385 "Clc1ccc(Cn2c(CN3CCCC3)nc4ccccc24)cc1" GX0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)nc(n2Cc3ccc(cc3)Cl)CN4CCCC4" GX0 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)nc(n2Cc3ccc(cc3)Cl)CN4CCCC4" # _pdbx_chem_comp_identifier.comp_id GX0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(4-chlorophenyl)methyl]-2-(pyrrolidin-1-ylmethyl)benzimidazole" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id GX0 _pdbx_chem_comp_synonyms.name Clemizole _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GX0 "Create component" 2020-09-29 PDBJ GX0 "Modify synonyms" 2021-03-01 PDBE GX0 "Initial release" 2021-03-31 RCSB ##