data_GXP # _chem_comp.id GXP _chem_comp.name "(4S)-4-hydroxy-2,5-dioxopentanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H6 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-01-16 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 146.098 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GXP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4OE7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GXP O O O 0 1 N N N N N N -28.624 23.258 -22.953 -3.668 -0.522 0.284 O GXP 1 GXP C C C 0 1 N N N N N N -28.961 22.249 -22.330 -2.750 -0.669 -0.487 C GXP 2 GXP C1 C1 C 0 1 N N S N N N -29.920 22.302 -21.134 -1.541 0.226 -0.398 C1 GXP 3 GXP O1 O1 O 0 1 N N N N N N -30.379 23.645 -20.849 -1.717 1.161 0.669 O1 GXP 4 GXP C2 C2 C 0 1 N N N N N N -31.129 21.389 -21.379 -0.296 -0.622 -0.132 C2 GXP 5 GXP C3 C3 C 0 1 N N N N N N -32.444 21.966 -20.842 0.928 0.257 -0.165 C3 GXP 6 GXP C4 C4 C 0 1 N N N N N N -33.249 22.775 -21.851 2.276 -0.334 0.067 C4 GXP 7 GXP O3 O3 O 0 1 N N N N N N -32.847 22.860 -23.039 2.389 -1.522 0.282 O3 GXP 8 GXP O4 O4 O 0 1 N N N N N N -34.276 23.342 -21.422 3.369 0.451 0.037 O4 GXP 9 GXP H1 H1 H 0 1 N N N N N N -28.566 21.292 -22.638 -2.793 -1.445 -1.237 H1 GXP 10 GXP H2 H2 H 0 1 N N N N N N -29.382 21.917 -20.255 -1.419 0.766 -1.337 H2 GXP 11 GXP H3 H3 H 0 1 N N N N N N -29.987 24.252 -21.466 -1.832 0.750 1.536 H3 GXP 12 GXP H4 H4 H 0 1 N N N N N N -31.234 21.232 -22.463 -0.379 -1.092 0.848 H4 GXP 13 GXP H7 H7 H 0 1 N N N N N N -34.686 23.831 -22.126 4.222 0.023 0.193 H7 GXP 14 GXP O2 O2 O 0 1 N Y N N N N ? ? ? 0.816 1.440 -0.379 O2 GXP 15 GXP H8 H8 H 0 1 N N N N N N -30.944 20.424 -20.885 -0.211 -1.393 -0.898 H8 GXP 16 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GXP O3 C4 DOUB N N 1 GXP O C DOUB N N 2 GXP C C1 SING N N 3 GXP C4 O4 SING N N 4 GXP C4 C3 SING N N 5 GXP C2 C1 SING N N 6 GXP C2 C3 SING N N 7 GXP C1 O1 SING N N 8 GXP C H1 SING N N 9 GXP C1 H2 SING N N 10 GXP O1 H3 SING N N 11 GXP C2 H4 SING N N 12 GXP O4 H7 SING N N 13 GXP C3 O2 DOUB N N 14 GXP C2 H8 SING N N 15 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GXP SMILES ACDLabs 12.01 "O=CC(O)CC(=O)C(=O)O" GXP InChI InChI 1.03 "InChI=1S/C5H6O5/c6-2-3(7)1-4(8)5(9)10/h2-3,7H,1H2,(H,9,10)/t3-/m0/s1" GXP InChIKey InChI 1.03 QZKCWTOLHHFWCD-VKHMYHEASA-N GXP SMILES_CANONICAL CACTVS 3.385 "O[C@@H](CC(=O)C(O)=O)C=O" GXP SMILES CACTVS 3.385 "O[CH](CC(=O)C(O)=O)C=O" GXP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C([C@@H](C=O)O)C(=O)C(=O)O" GXP SMILES "OpenEye OEToolkits" 1.7.6 "C(C(C=O)O)C(=O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GXP "SYSTEMATIC NAME" ACDLabs 12.01 "(4S)-4-hydroxy-2,5-dioxopentanoic acid" GXP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(4S)-4-oxidanyl-2,5-bis(oxidanylidene)pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GXP "Create component" 2014-01-16 RCSB GXP "Initial release" 2014-12-24 RCSB GXP "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id GXP _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C3 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #