data_GY0 # _chem_comp.id GY0 _chem_comp.name "methyl 3-[(E,3R,9R)-3,9-bis(oxidanyl)dec-4-enoyl]sulfanylpropanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H24 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-08 _chem_comp.pdbx_modified_date 2021-01-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 304.402 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GY0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7D79 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GY0 C02 C1 C 0 1 N N R 65.432 76.705 98.118 -7.379 -1.458 0.533 C02 GY0 1 GY0 C03 C2 C 0 1 N N N 64.982 78.045 97.549 -6.779 -0.110 0.128 C03 GY0 2 GY0 C04 C3 C 0 1 N N N 66.215 78.741 96.989 -5.303 -0.068 0.529 C04 GY0 3 GY0 C05 C4 C 0 1 N N N 66.553 78.161 95.620 -4.703 1.279 0.124 C05 GY0 4 GY0 C06 C5 C 0 1 N N N 65.638 78.846 94.615 -3.249 1.321 0.518 C06 GY0 5 GY0 C07 C6 C 0 1 N N N 65.791 78.687 93.320 -2.334 1.588 -0.381 C07 GY0 6 GY0 C08 C7 C 0 1 N N R 64.825 79.422 92.394 -0.880 1.629 0.013 C08 GY0 7 GY0 C09 C8 C 0 1 N N N 65.542 80.508 91.587 -0.104 0.583 -0.789 C09 GY0 8 GY0 C10 C9 C 0 1 N N N 66.700 81.142 92.363 1.324 0.539 -0.309 C10 GY0 9 GY0 C12 C10 C 0 1 N N N 68.083 83.369 93.698 3.921 -0.153 -0.072 C12 GY0 10 GY0 C13 C11 C 0 1 N N N 68.735 83.831 92.394 5.083 -1.026 -0.553 C13 GY0 11 GY0 C14 C12 C 0 1 N N N 65.286 76.710 99.636 -8.882 -1.454 0.247 C14 GY0 12 GY0 C17 C13 C 0 1 N N N 70.102 84.452 92.692 6.320 -0.699 0.243 C17 GY0 13 GY0 C19 C14 C 0 1 N N N 72.089 85.463 91.948 8.620 -0.979 0.799 C19 GY0 14 GY0 O01 O1 O 0 1 N N N 64.660 75.680 97.561 -6.754 -2.502 -0.216 O01 GY0 15 GY0 O15 O2 O 0 1 N N N 64.240 78.498 91.522 -0.350 2.928 -0.258 O15 GY0 16 GY0 O16 O3 O 0 1 N N N 67.783 80.663 92.321 1.685 1.272 0.587 O16 GY0 17 GY0 O18 O4 O 0 1 N N N 71.066 84.544 91.680 7.469 -1.346 -0.007 O18 GY0 18 GY0 O20 O5 O 0 1 N N N 70.346 84.854 93.780 6.277 0.146 1.106 O20 GY0 19 GY0 S11 S1 S 0 1 N N N 66.450 82.651 93.341 2.436 -0.546 -1.029 S11 GY0 20 GY0 H1 H1 H 0 1 N N N 66.494 76.559 97.870 -7.213 -1.625 1.597 H1 GY0 21 GY0 H2 H2 H 0 1 N N N 64.533 78.659 98.344 -6.867 0.017 -0.951 H2 GY0 22 GY0 H3 H3 H 0 1 N N N 64.245 77.885 96.748 -7.316 0.693 0.634 H3 GY0 23 GY0 H4 H4 H 0 1 N N N 67.064 78.587 97.671 -5.215 -0.196 1.607 H4 GY0 24 GY0 H5 H5 H 0 1 N N N 66.014 79.818 96.891 -4.767 -0.872 0.023 H5 GY0 25 GY0 H6 H6 H 0 1 N N N 66.376 77.075 95.614 -4.791 1.407 -0.955 H6 GY0 26 GY0 H7 H7 H 0 1 N N N 67.606 78.363 95.373 -5.239 2.082 0.629 H7 GY0 27 GY0 H8 H8 H 0 1 N N N 64.842 79.480 94.976 -2.961 1.130 1.541 H8 GY0 28 GY0 H9 H9 H 0 1 N N N 66.574 78.057 92.924 -2.622 1.778 -1.404 H9 GY0 29 GY0 H10 H10 H 0 1 N N N 64.052 79.903 93.011 -0.786 1.413 1.078 H10 GY0 30 GY0 H11 H11 H 0 1 N N N 64.817 81.294 91.330 -0.564 -0.396 -0.652 H11 GY0 31 GY0 H12 H12 H 0 1 N N N 65.939 80.059 90.665 -0.124 0.848 -1.847 H12 GY0 32 GY0 H13 H13 H 0 1 N N N 68.720 82.611 94.177 3.735 -0.346 0.984 H13 GY0 33 GY0 H14 H14 H 0 1 N N N 67.965 84.229 94.373 4.175 0.898 -0.211 H14 GY0 34 GY0 H15 H15 H 0 1 N N N 68.091 84.579 91.909 4.829 -2.077 -0.414 H15 GY0 35 GY0 H16 H16 H 0 1 N N N 68.864 82.968 91.724 5.269 -0.833 -1.610 H16 GY0 36 GY0 H17 H17 H 0 1 N N N 65.612 75.740 100.039 -9.049 -1.287 -0.817 H17 GY0 37 GY0 H18 H18 H 0 1 N N N 65.907 77.512 100.061 -9.310 -2.414 0.535 H18 GY0 38 GY0 H19 H19 H 0 1 N N N 64.233 76.882 99.902 -9.359 -0.658 0.819 H19 GY0 39 GY0 H20 H20 H 0 1 N N N 72.801 85.475 91.109 9.481 -1.575 0.495 H20 GY0 40 GY0 H21 H21 H 0 1 N N N 71.656 86.466 92.076 8.842 0.078 0.656 H21 GY0 41 GY0 H22 H22 H 0 1 N N N 72.613 85.170 92.869 8.402 -1.165 1.850 H22 GY0 42 GY0 H23 H23 H 0 1 N N N 64.940 74.844 97.915 -6.862 -2.418 -1.174 H23 GY0 43 GY0 H24 H24 H 0 1 N N N 63.796 77.825 92.024 -0.400 3.187 -1.189 H24 GY0 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GY0 O15 C08 SING N N 1 GY0 C09 C10 SING N N 2 GY0 C09 C08 SING N N 3 GY0 O18 C19 SING N N 4 GY0 O18 C17 SING N N 5 GY0 O16 C10 DOUB N N 6 GY0 C10 S11 SING N N 7 GY0 C08 C07 SING N N 8 GY0 C13 C17 SING N N 9 GY0 C13 C12 SING N N 10 GY0 C17 O20 DOUB N N 11 GY0 C07 C06 DOUB N E 12 GY0 S11 C12 SING N N 13 GY0 C06 C05 SING N N 14 GY0 C05 C04 SING N N 15 GY0 C04 C03 SING N N 16 GY0 C03 C02 SING N N 17 GY0 O01 C02 SING N N 18 GY0 C02 C14 SING N N 19 GY0 C02 H1 SING N N 20 GY0 C03 H2 SING N N 21 GY0 C03 H3 SING N N 22 GY0 C04 H4 SING N N 23 GY0 C04 H5 SING N N 24 GY0 C05 H6 SING N N 25 GY0 C05 H7 SING N N 26 GY0 C06 H8 SING N N 27 GY0 C07 H9 SING N N 28 GY0 C08 H10 SING N N 29 GY0 C09 H11 SING N N 30 GY0 C09 H12 SING N N 31 GY0 C12 H13 SING N N 32 GY0 C12 H14 SING N N 33 GY0 C13 H15 SING N N 34 GY0 C13 H16 SING N N 35 GY0 C14 H17 SING N N 36 GY0 C14 H18 SING N N 37 GY0 C14 H19 SING N N 38 GY0 C19 H20 SING N N 39 GY0 C19 H21 SING N N 40 GY0 C19 H22 SING N N 41 GY0 O01 H23 SING N N 42 GY0 O15 H24 SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GY0 InChI InChI 1.03 "InChI=1S/C14H24O5S/c1-11(15)6-4-3-5-7-12(16)10-14(18)20-9-8-13(17)19-2/h5,7,11-12,15-16H,3-4,6,8-10H2,1-2H3/b7-5+/t11-,12+/m1/s1" GY0 InChIKey InChI 1.03 ALEAPVQZLMYNNX-BAEOLTKYSA-N GY0 SMILES_CANONICAL CACTVS 3.385 "COC(=O)CCSC(=O)C[C@@H](O)\C=C\CCC[C@@H](C)O" GY0 SMILES CACTVS 3.385 "COC(=O)CCSC(=O)C[CH](O)C=CCCC[CH](C)O" GY0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CCC/C=C/[C@@H](CC(=O)SCCC(=O)OC)O)O" GY0 SMILES "OpenEye OEToolkits" 2.0.7 "CC(CCCC=CC(CC(=O)SCCC(=O)OC)O)O" # _pdbx_chem_comp_identifier.comp_id GY0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methyl 3-[(~{E},3~{R},9~{R})-3,9-bis(oxidanyl)dec-4-enoyl]sulfanylpropanoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GY0 "Create component" 2020-10-08 PDBJ GY0 "Initial release" 2021-01-27 RCSB ##