data_GY5 # _chem_comp.id GY5 _chem_comp.name "5-hydroxy-N-(2-methoxyethyl)-6-oxo-2-[(2S)-1-(phenoxyacetyl)pyrrolidin-2-yl]-1,6-dihydropyrimidine-4-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms SRI-29685 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-06-09 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 416.428 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GY5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5W3I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GY5 N N1 N 0 1 N N N 24.234 -20.893 9.432 -1.182 -1.063 1.593 N GY5 1 GY5 C C1 C 0 1 Y N N 25.371 -17.558 5.243 -7.164 0.757 -0.075 C GY5 2 GY5 O O1 O 0 1 N N N 26.474 -21.144 9.678 -1.036 0.867 0.508 O GY5 3 GY5 C01 C2 C 0 1 N N N 22.705 -19.519 7.863 0.969 -1.430 0.508 C01 GY5 4 GY5 C02 C3 C 0 1 N N N 22.702 -17.142 7.711 2.529 -0.625 -1.002 C02 GY5 5 GY5 C03 C4 C 0 1 N N N 22.080 -17.201 6.483 2.287 -1.687 -1.859 C03 GY5 6 GY5 C04 C5 C 0 1 N N N 21.722 -18.535 5.854 1.296 -2.687 -1.444 C04 GY5 7 GY5 C05 C6 C 0 1 N N N 23.107 -15.826 8.443 3.525 0.411 -1.360 C05 GY5 8 GY5 C06 C7 C 0 1 N N N 24.232 -14.875 10.596 4.897 2.341 -0.787 C06 GY5 9 GY5 C07 C8 C 0 1 N N N 22.285 -20.649 10.914 -0.978 -2.679 3.351 C07 GY5 10 GY5 C08 C9 C 0 1 N N N 21.849 -21.174 9.549 0.411 -2.540 2.675 C08 GY5 11 GY5 C09 C10 C 0 1 N N S 23.019 -20.879 8.569 0.256 -1.261 1.825 C09 GY5 12 GY5 C1 C11 C 0 1 N N N 25.575 -15.253 11.362 5.129 3.251 0.421 C1 GY5 13 GY5 C10 C12 C 0 1 N N N 23.828 -20.533 10.816 -1.921 -2.167 2.234 C10 GY5 14 GY5 C11 C13 C 0 1 N N N 25.573 -21.176 8.910 -1.734 -0.039 0.913 C11 GY5 15 GY5 C12 C14 C 0 1 N N N 25.791 -21.551 7.319 -3.219 -0.018 0.657 C12 GY5 16 GY5 C13 C15 C 0 1 Y N N 25.815 -16.595 6.153 -7.541 1.753 -0.956 C13 GY5 17 GY5 C14 C16 C 0 1 Y N N 26.577 -17.016 7.235 -6.580 2.530 -1.577 C14 GY5 18 GY5 C15 C17 C 0 1 Y N N 26.887 -18.373 7.398 -5.241 2.312 -1.318 C15 GY5 19 GY5 C16 C18 C 0 1 Y N N 26.448 -19.360 6.486 -4.860 1.313 -0.434 C16 GY5 20 GY5 C17 C19 C 0 1 Y N N 25.677 -18.912 5.403 -5.826 0.535 0.188 C17 GY5 21 GY5 N01 N2 N 0 1 N N N 23.012 -18.359 8.401 1.852 -0.543 0.157 N01 GY5 22 GY5 N02 N3 N 0 1 N N N 22.087 -19.662 6.650 0.669 -2.505 -0.261 N02 GY5 23 GY5 N03 N4 N 0 1 N N N 23.742 -15.974 9.707 3.833 1.382 -0.478 N03 GY5 24 GY5 O01 O2 O 0 1 N N N 21.749 -16.151 5.779 2.951 -1.804 -3.036 O01 GY5 25 GY5 O02 O3 O 0 1 N N N 21.173 -18.686 4.792 1.036 -3.646 -2.151 O02 GY5 26 GY5 O03 O4 O 0 1 N N N 22.891 -14.750 7.981 4.064 0.385 -2.449 O03 GY5 27 GY5 O1 O5 O 0 1 N N N 26.751 -20.715 6.640 -3.543 1.096 -0.177 O1 GY5 28 GY5 O11 O6 O 0 1 N N N 25.635 -16.653 11.690 5.611 2.473 1.518 O11 GY5 29 GY5 C18 C20 C 0 1 N N N 26.292 -17.491 10.740 5.755 3.210 2.734 C18 GY5 30 GY5 H H1 H 0 1 N N N 24.777 -17.248 4.396 -7.917 0.154 0.413 H GY5 31 GY5 H10 H2 H 0 1 N N N 24.418 -13.982 9.981 4.604 2.944 -1.646 H10 GY5 32 GY5 H03 H3 H 0 1 N N N 23.454 -14.652 11.341 5.816 1.802 -1.018 H03 GY5 33 GY5 H05 H4 H 0 1 N N N 21.834 -19.666 11.114 -1.191 -3.719 3.595 H05 GY5 34 GY5 H11 H5 H 0 1 N N N 21.999 -21.352 11.710 -1.045 -2.049 4.238 H11 GY5 35 GY5 H07 H6 H 0 1 N N N 20.936 -20.658 9.217 1.194 -2.413 3.423 H07 GY5 36 GY5 H06 H7 H 0 1 N N N 21.660 -22.256 9.601 0.621 -3.403 2.042 H06 GY5 37 GY5 H08 H8 H 0 1 N N N 23.076 -21.677 7.814 0.666 -0.405 2.361 H08 GY5 38 GY5 H13 H9 H 0 1 N N N 26.432 -15.002 10.720 5.865 4.013 0.165 H13 GY5 39 GY5 H12 H10 H 0 1 N N N 25.630 -14.668 12.292 4.191 3.731 0.700 H12 GY5 40 GY5 H1 H11 H 0 1 N N N 24.299 -21.221 11.533 -2.853 -1.801 2.662 H1 GY5 41 GY5 H09 H12 H 0 1 N N N 24.139 -19.502 11.039 -2.119 -2.959 1.512 H09 GY5 42 GY5 H2 H13 H 0 1 N N N 24.823 -21.452 6.806 -3.515 -0.942 0.160 H2 GY5 43 GY5 H3 H14 H 0 1 N N N 26.135 -22.594 7.254 -3.751 0.071 1.604 H3 GY5 44 GY5 H120 H15 H 0 0 N N N 25.572 -15.551 6.018 -8.587 1.924 -1.160 H120 GY5 45 GY5 H130 H16 H 0 0 N N N 26.933 -16.294 7.955 -6.877 3.307 -2.265 H130 GY5 46 GY5 H14 H17 H 0 1 N N N 27.481 -18.675 8.248 -4.491 2.918 -1.804 H14 GY5 47 GY5 H15 H18 H 0 1 N N N 25.313 -19.627 4.680 -5.532 -0.243 0.877 H15 GY5 48 GY5 H01 H19 H 0 1 N N N 21.886 -20.581 6.312 0.004 -3.144 0.039 H01 GY5 49 GY5 H04 H20 H 0 1 N N N 23.875 -16.909 10.035 3.352 1.446 0.362 H04 GY5 50 GY5 H02 H21 H 0 1 N N N 21.329 -16.429 4.973 2.702 -2.582 -3.552 H02 GY5 51 GY5 H112 H22 H 0 0 N N N 26.276 -18.532 11.096 6.394 4.076 2.560 H112 GY5 52 GY5 H111 H23 H 0 0 N N N 25.772 -17.426 9.773 4.775 3.543 3.076 H111 GY5 53 GY5 H113 H24 H 0 0 N N N 27.334 -17.161 10.619 6.208 2.572 3.494 H113 GY5 54 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GY5 O02 C04 DOUB N N 1 GY5 C C17 DOUB Y N 2 GY5 C C13 SING Y N 3 GY5 C17 C16 SING Y N 4 GY5 O01 C03 SING N N 5 GY5 C04 C03 SING N N 6 GY5 C04 N02 SING N N 7 GY5 C13 C14 DOUB Y N 8 GY5 C03 C02 DOUB N N 9 GY5 C16 O1 SING N N 10 GY5 C16 C15 DOUB Y N 11 GY5 O1 C12 SING N N 12 GY5 N02 C01 SING N N 13 GY5 C14 C15 SING Y N 14 GY5 C12 C11 SING N N 15 GY5 C02 N01 SING N N 16 GY5 C02 C05 SING N N 17 GY5 C01 N01 DOUB N N 18 GY5 C01 C09 SING N N 19 GY5 O03 C05 DOUB N N 20 GY5 C05 N03 SING N N 21 GY5 C09 N SING N N 22 GY5 C09 C08 SING N N 23 GY5 C11 N SING N N 24 GY5 C11 O DOUB N N 25 GY5 N C10 SING N N 26 GY5 C08 C07 SING N N 27 GY5 N03 C06 SING N N 28 GY5 C06 C1 SING N N 29 GY5 C18 O11 SING N N 30 GY5 C10 C07 SING N N 31 GY5 C1 O11 SING N N 32 GY5 C H SING N N 33 GY5 C06 H10 SING N N 34 GY5 C06 H03 SING N N 35 GY5 C07 H05 SING N N 36 GY5 C07 H11 SING N N 37 GY5 C08 H07 SING N N 38 GY5 C08 H06 SING N N 39 GY5 C09 H08 SING N N 40 GY5 C1 H13 SING N N 41 GY5 C1 H12 SING N N 42 GY5 C10 H1 SING N N 43 GY5 C10 H09 SING N N 44 GY5 C12 H2 SING N N 45 GY5 C12 H3 SING N N 46 GY5 C13 H120 SING N N 47 GY5 C14 H130 SING N N 48 GY5 C15 H14 SING N N 49 GY5 C17 H15 SING N N 50 GY5 N02 H01 SING N N 51 GY5 N03 H04 SING N N 52 GY5 O01 H02 SING N N 53 GY5 C18 H112 SING N N 54 GY5 C18 H111 SING N N 55 GY5 C18 H113 SING N N 56 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GY5 SMILES ACDLabs 12.01 "N1(CCCC1C2=NC(C(NCCOC)=O)=C(C(N2)=O)O)C(=O)COc3ccccc3" GY5 InChI InChI 1.03 "InChI=1S/C20H24N4O6/c1-29-11-9-21-19(27)16-17(26)20(28)23-18(22-16)14-8-5-10-24(14)15(25)12-30-13-6-3-2-4-7-13/h2-4,6-7,14,26H,5,8-12H2,1H3,(H,21,27)(H,22,23,28)/t14-/m0/s1" GY5 InChIKey InChI 1.03 QXPINDFCNAGJSF-AWEZNQCLSA-N GY5 SMILES_CANONICAL CACTVS 3.385 "COCCNC(=O)C1=C(O)C(=O)NC(=N1)[C@@H]2CCCN2C(=O)COc3ccccc3" GY5 SMILES CACTVS 3.385 "COCCNC(=O)C1=C(O)C(=O)NC(=N1)[CH]2CCCN2C(=O)COc3ccccc3" GY5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "COCCNC(=O)C1=C(C(=O)NC(=N1)[C@@H]2CCCN2C(=O)COc3ccccc3)O" GY5 SMILES "OpenEye OEToolkits" 2.0.6 "COCCNC(=O)C1=C(C(=O)NC(=N1)C2CCCN2C(=O)COc3ccccc3)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GY5 "SYSTEMATIC NAME" ACDLabs 12.01 "5-hydroxy-N-(2-methoxyethyl)-6-oxo-2-[(2S)-1-(phenoxyacetyl)pyrrolidin-2-yl]-1,6-dihydropyrimidine-4-carboxamide" GY5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-(2-methoxyethyl)-5-oxidanyl-6-oxidanylidene-2-[(2~{S})-1-(2-phenoxyethanoyl)pyrrolidin-2-yl]-1~{H}-pyrimidine-4-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GY5 "Create component" 2017-06-09 RCSB GY5 "Initial release" 2017-12-27 RCSB GY5 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id GY5 _pdbx_chem_comp_synonyms.name SRI-29685 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##