data_GY6 # _chem_comp.id GY6 _chem_comp.name "2-[(2S)-1-(2,6-dichlorobenzene-1-carbonyl)pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-(2-phenylethyl)-1,6-dihydropyrimidine-4-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H22 Cl2 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-06-12 _chem_comp.pdbx_modified_date 2017-12-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 501.362 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GY6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5W44 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GY6 C01 C1 C 0 1 N N N -8.409 79.991 14.914 0.670 -1.404 -1.061 C01 GY6 1 GY6 C03 C2 C 0 1 N N N -9.858 80.321 16.873 -1.292 -1.964 0.035 C03 GY6 2 GY6 C04 C3 C 0 1 N N N -10.249 78.913 16.800 -0.736 -3.153 0.480 C04 GY6 3 GY6 C07 C4 C 0 1 N N N -9.699 78.066 15.765 0.646 -3.450 0.083 C07 GY6 4 GY6 C11 C5 C 0 1 N N N -10.308 81.290 17.938 -2.685 -1.612 0.392 C11 GY6 5 GY6 C14 C6 C 0 1 N N N -10.141 83.605 18.794 -4.593 -0.100 0.309 C14 GY6 6 GY6 C17 C7 C 0 1 N N N -8.885 83.957 19.653 -5.055 1.102 -0.518 C17 GY6 7 GY6 C21 C8 C 0 1 N N N -5.904 81.499 15.307 3.349 -0.468 -3.380 C21 GY6 8 GY6 C24 C9 C 0 1 N N N -6.290 80.187 14.435 1.954 -1.117 -3.184 C24 GY6 9 GY6 C27 C10 C 0 1 N N S -7.463 80.436 13.916 1.421 -0.416 -1.916 C27 GY6 10 GY6 C30 C11 C 0 1 N N N -6.354 82.552 14.595 3.810 -0.271 -1.914 C30 GY6 11 GY6 C33 C12 C 0 1 N N N -8.557 82.701 13.088 2.542 0.792 -0.025 C33 GY6 12 GY6 C35 C13 C 0 1 Y N N -8.333 87.024 12.685 6.115 2.381 1.635 C35 GY6 13 GY6 C37 C14 C 0 1 Y N N -9.174 86.480 13.673 5.752 1.074 1.906 C37 GY6 14 GY6 C39 C15 C 0 1 Y N N -9.274 85.082 13.822 4.592 0.550 1.370 C39 GY6 15 GY6 C41 C16 C 0 1 Y N N -8.531 84.250 12.992 3.784 1.344 0.552 C41 GY6 16 GY6 C42 C17 C 0 1 Y N N -7.695 84.801 12.021 4.157 2.664 0.283 C42 GY6 17 GY6 C44 C18 C 0 1 Y N N -7.594 86.192 11.861 5.317 3.175 0.830 C44 GY6 18 GY6 C46 C19 C 0 1 Y N N -5.485 84.816 17.129 -9.084 2.077 0.515 C46 GY6 19 GY6 C48 C20 C 0 1 Y N N -5.400 83.824 18.109 -8.034 2.659 1.201 C48 GY6 20 GY6 C50 C21 C 0 1 Y N N -6.505 83.552 18.922 -6.731 2.344 0.867 C50 GY6 21 GY6 C52 C22 C 0 1 Y N N -7.690 84.266 18.755 -6.477 1.446 -0.154 C52 GY6 22 GY6 C53 C23 C 0 1 Y N N -7.782 85.257 17.776 -7.526 0.864 -0.840 C53 GY6 23 GY6 C55 C24 C 0 1 Y N N -6.667 85.535 16.959 -8.830 1.175 -0.501 C55 GY6 24 GY6 N02 N1 N 0 1 N N N -8.942 80.842 15.950 -0.557 -1.133 -0.725 N02 GY6 25 GY6 N09 N2 N 0 1 N N N -8.803 78.616 14.845 1.296 -2.543 -0.678 N09 GY6 26 GY6 N13 N3 N 0 1 N N N -9.805 82.633 17.829 -3.256 -0.508 -0.128 N13 GY6 27 GY6 N29 N4 N 0 1 N N N -7.531 82.017 13.815 2.586 0.097 -1.180 N29 GY6 28 GY6 O05 O1 O 0 1 N N N -11.141 78.352 17.686 -1.447 -4.016 1.247 O05 GY6 29 GY6 O08 O2 O 0 1 N N N -10.005 76.868 15.648 1.195 -4.478 0.441 O08 GY6 30 GY6 O12 O3 O 0 1 N N N -10.974 80.978 18.892 -3.313 -2.319 1.155 O12 GY6 31 GY6 O34 O4 O 0 1 N N N -9.398 82.016 12.538 1.480 0.963 0.541 O34 GY6 32 GY6 CL2 CL1 CL 0 0 N N N -10.315 84.397 15.061 4.139 -1.091 1.711 CL2 GY6 33 GY6 CL CL2 CL 0 0 N N N -6.788 83.727 11.015 3.161 3.660 -0.732 CL GY6 34 GY6 H15 H1 H 0 1 N N N -10.503 84.512 18.288 -4.563 0.175 1.363 H15 GY6 35 GY6 H16 H2 H 0 1 N N N -10.932 83.211 19.449 -5.290 -0.926 0.169 H16 GY6 36 GY6 H18 H3 H 0 1 N N N -8.639 83.103 20.301 -4.410 1.956 -0.310 H18 GY6 37 GY6 H19 H4 H 0 1 N N N -9.107 84.837 20.275 -5.002 0.855 -1.578 H19 GY6 38 GY6 H23 H5 H 0 1 N N N -6.394 81.464 16.291 4.021 -1.140 -3.914 H23 GY6 39 GY6 H22 H6 H 0 1 N N N -4.814 81.564 15.442 3.266 0.489 -3.895 H22 GY6 40 GY6 H26 H7 H 0 1 N N N -6.338 79.298 15.081 1.309 -0.910 -4.038 H26 GY6 41 GY6 H25 H8 H 0 1 N N N -5.547 80.023 13.641 2.047 -2.191 -3.023 H25 GY6 42 GY6 H28 H9 H 0 1 N N N -7.643 79.980 12.931 0.764 0.407 -2.196 H28 GY6 43 GY6 H31 H10 H 0 1 N N N -5.573 82.921 13.914 4.224 -1.199 -1.519 H31 GY6 44 GY6 H32 H11 H 0 1 N N N -6.671 83.365 15.264 4.548 0.529 -1.852 H32 GY6 45 GY6 H36 H12 H 0 1 N N N -8.263 88.095 12.569 7.023 2.785 2.056 H36 GY6 46 GY6 H38 H13 H 0 1 N N N -9.743 87.134 14.317 6.377 0.461 2.538 H38 GY6 47 GY6 H45 H14 H 0 1 N N N -6.947 86.609 11.103 5.607 4.194 0.623 H45 GY6 48 GY6 H47 H15 H 0 1 N N N -4.632 85.027 16.501 -10.102 2.323 0.776 H47 GY6 49 GY6 H49 H16 H 0 1 N N N -4.483 83.268 18.239 -8.233 3.360 1.998 H49 GY6 50 GY6 H51 H17 H 0 1 N N N -6.440 82.787 19.681 -5.911 2.799 1.402 H51 GY6 51 GY6 H54 H18 H 0 1 N N N -8.702 85.808 17.645 -7.328 0.163 -1.637 H54 GY6 52 GY6 H56 H19 H 0 1 N N N -6.729 86.304 16.203 -9.650 0.721 -1.037 H56 GY6 53 GY6 H10 H20 H 0 1 N N N -8.428 78.036 14.122 2.213 -2.706 -0.951 H10 GY6 54 GY6 H20 H21 H 0 1 N N N -9.212 82.880 17.062 -2.782 0.016 -0.792 H20 GY6 55 GY6 H06 H22 H 0 1 N N N -11.270 77.436 17.469 -0.958 -4.812 1.500 H06 GY6 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GY6 CL C42 SING N N 1 GY6 C44 C42 DOUB Y N 2 GY6 C44 C35 SING Y N 3 GY6 C42 C41 SING Y N 4 GY6 O34 C33 DOUB N N 5 GY6 C35 C37 DOUB Y N 6 GY6 C41 C33 SING N N 7 GY6 C41 C39 DOUB Y N 8 GY6 C33 N29 SING N N 9 GY6 C37 C39 SING Y N 10 GY6 N29 C27 SING N N 11 GY6 N29 C30 SING N N 12 GY6 C39 CL2 SING N N 13 GY6 C27 C24 SING N N 14 GY6 C27 C01 SING N N 15 GY6 C24 C21 SING N N 16 GY6 C30 C21 SING N N 17 GY6 N09 C01 SING N N 18 GY6 N09 C07 SING N N 19 GY6 C01 N02 DOUB N N 20 GY6 O08 C07 DOUB N N 21 GY6 C07 C04 SING N N 22 GY6 N02 C03 SING N N 23 GY6 C04 C03 DOUB N N 24 GY6 C04 O05 SING N N 25 GY6 C03 C11 SING N N 26 GY6 C55 C46 DOUB Y N 27 GY6 C55 C53 SING Y N 28 GY6 C46 C48 SING Y N 29 GY6 C53 C52 DOUB Y N 30 GY6 N13 C11 SING N N 31 GY6 N13 C14 SING N N 32 GY6 C11 O12 DOUB N N 33 GY6 C48 C50 DOUB Y N 34 GY6 C52 C50 SING Y N 35 GY6 C52 C17 SING N N 36 GY6 C14 C17 SING N N 37 GY6 C14 H15 SING N N 38 GY6 C14 H16 SING N N 39 GY6 C17 H18 SING N N 40 GY6 C17 H19 SING N N 41 GY6 C21 H23 SING N N 42 GY6 C21 H22 SING N N 43 GY6 C24 H26 SING N N 44 GY6 C24 H25 SING N N 45 GY6 C27 H28 SING N N 46 GY6 C30 H31 SING N N 47 GY6 C30 H32 SING N N 48 GY6 C35 H36 SING N N 49 GY6 C37 H38 SING N N 50 GY6 C44 H45 SING N N 51 GY6 C46 H47 SING N N 52 GY6 C48 H49 SING N N 53 GY6 C50 H51 SING N N 54 GY6 C53 H54 SING N N 55 GY6 C55 H56 SING N N 56 GY6 N09 H10 SING N N 57 GY6 N13 H20 SING N N 58 GY6 O05 H06 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GY6 SMILES ACDLabs 12.01 "C2(=NC(C(=O)NCCc1ccccc1)=C(O)C(N2)=O)C3CCCN3C(c4c(cccc4Cl)Cl)=O" GY6 InChI InChI 1.03 "InChI=1S/C24H22Cl2N4O4/c25-15-8-4-9-16(26)18(15)24(34)30-13-5-10-17(30)21-28-19(20(31)23(33)29-21)22(32)27-12-11-14-6-2-1-3-7-14/h1-4,6-9,17,31H,5,10-13H2,(H,27,32)(H,28,29,33)/t17-/m0/s1" GY6 InChIKey InChI 1.03 AEFIMSPWYSLTJK-KRWDZBQOSA-N GY6 SMILES_CANONICAL CACTVS 3.385 "OC1=C(N=C(NC1=O)[C@@H]2CCCN2C(=O)c3c(Cl)cccc3Cl)C(=O)NCCc4ccccc4" GY6 SMILES CACTVS 3.385 "OC1=C(N=C(NC1=O)[CH]2CCCN2C(=O)c3c(Cl)cccc3Cl)C(=O)NCCc4ccccc4" GY6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)CCNC(=O)C2=C(C(=O)NC(=N2)[C@@H]3CCCN3C(=O)c4c(cccc4Cl)Cl)O" GY6 SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)CCNC(=O)C2=C(C(=O)NC(=N2)C3CCCN3C(=O)c4c(cccc4Cl)Cl)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GY6 "SYSTEMATIC NAME" ACDLabs 12.01 "2-[(2S)-1-(2,6-dichlorobenzene-1-carbonyl)pyrrolidin-2-yl]-5-hydroxy-6-oxo-N-(2-phenylethyl)-1,6-dihydropyrimidine-4-carboxamide" GY6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[(2~{S})-1-[2,6-bis(chloranyl)phenyl]carbonylpyrrolidin-2-yl]-5-oxidanyl-6-oxidanylidene-~{N}-(2-phenylethyl)-1~{H}-pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GY6 "Create component" 2017-06-12 RCSB GY6 "Initial release" 2017-12-27 RCSB #