data_GY8 # _chem_comp.id GY8 _chem_comp.name ;2-[(2S)-1-(3,5-dichloropyridine-4-carbonyl)pyrrolidin-2-yl]-N-(2,3-dihydro-1H-inden-2-yl)-5-hydroxy-6-oxo-1,6-dihydropy rimidine-4-carboxamide ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H21 Cl2 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms SRI-29928 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-06-22 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 514.361 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GY8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5W7U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GY8 C1 C1 C 0 1 Y N N 126.349 105.321 285.582 -4.620 0.449 -1.452 C1 GY8 1 GY8 C10 C2 C 0 1 Y N N 132.989 105.219 282.573 6.593 0.753 0.156 C10 GY8 2 GY8 C11 C3 C 0 1 Y N N 133.011 103.853 282.816 6.026 1.834 -0.493 C11 GY8 3 GY8 C12 C4 C 0 1 Y N N 132.265 102.987 282.030 6.784 2.967 -0.734 C12 GY8 4 GY8 C13 C5 C 0 1 Y N N 131.501 103.509 281.000 8.103 3.022 -0.328 C13 GY8 5 GY8 C14 C6 C 0 1 Y N N 131.476 104.870 280.760 8.669 1.941 0.321 C14 GY8 6 GY8 C15 C7 C 0 1 Y N N 132.221 105.738 281.540 7.917 0.807 0.559 C15 GY8 7 GY8 C16 C8 C 0 1 N N N 133.921 103.562 283.981 4.583 1.527 -0.833 C16 GY8 8 GY8 C17 C9 C 0 1 N N N 131.067 106.450 288.446 0.725 -3.184 -0.335 C17 GY8 9 GY8 C18 C10 C 0 1 N N N 129.824 106.348 289.080 -0.640 -3.469 0.125 C18 GY8 10 GY8 C19 C11 C 0 1 N N N 128.711 102.014 287.723 -1.871 -0.926 3.265 C19 GY8 11 GY8 C2 C12 C 0 1 Y N N 127.649 105.248 285.074 -3.876 1.238 -0.567 C2 GY8 12 GY8 C20 C13 C 0 1 N N N 129.821 101.468 286.838 -3.271 -0.287 3.465 C20 GY8 13 GY8 C21 C14 C 0 1 N N N 129.325 101.822 285.451 -3.785 -0.202 2.006 C21 GY8 14 GY8 C22 C15 C 0 1 Y N N 128.367 106.444 285.011 -4.372 2.505 -0.237 C22 GY8 15 GY8 C23 C16 C 0 1 Y N N 127.763 107.625 285.422 -5.567 2.923 -0.794 C23 GY8 16 GY8 C24 C17 C 0 1 Y N N 125.825 106.544 285.978 -5.802 0.950 -1.966 C24 GY8 17 GY8 C3 C18 C 0 1 N N N 128.253 103.932 284.676 -2.603 0.747 0.004 C3 GY8 18 GY8 C4 C19 C 0 1 N N S 128.460 103.401 287.107 -1.393 -0.311 1.933 C4 GY8 19 GY8 C5 C20 C 0 1 N N N 129.360 104.507 287.615 -0.655 -1.348 1.126 C5 GY8 20 GY8 C6 C21 C 0 1 N N N 131.399 105.584 287.442 1.277 -1.960 0.005 C6 GY8 21 GY8 C7 C22 C 0 1 N N N 132.711 105.656 286.709 2.651 -1.616 -0.426 C7 GY8 22 GY8 C8 C23 C 0 1 N N N 133.936 104.911 284.727 4.457 -0.006 -0.715 C8 GY8 23 GY8 C9 C24 C 0 1 N N N 133.880 105.921 283.563 5.569 -0.353 0.297 C9 GY8 24 GY8 N1 N1 N 0 1 N N N 128.649 103.115 285.664 -2.594 0.134 1.205 N1 GY8 25 GY8 N2 N2 N 0 1 N N N 130.548 104.638 287.020 0.554 -1.085 0.728 N2 GY8 26 GY8 N3 N3 N 0 1 N N N 132.739 105.011 285.538 3.141 -0.382 -0.193 N3 GY8 27 GY8 N4 N4 N 0 1 N N N 128.984 105.351 288.632 -1.276 -2.520 0.847 N4 GY8 28 GY8 N5 N5 N 0 1 Y N N 126.521 107.673 285.898 -6.235 2.147 -1.624 N5 GY8 29 GY8 O1 O1 O 0 1 N N N 128.402 103.627 283.493 -1.564 0.895 -0.609 O1 GY8 30 GY8 O2 O2 O 0 1 N N N 133.678 106.292 287.130 3.337 -2.446 -0.990 O2 GY8 31 GY8 O3 O3 O 0 1 N N N 131.880 107.417 288.890 1.423 -4.091 -1.063 O3 GY8 32 GY8 O4 O4 O 0 1 N N N 129.450 107.093 290.004 -1.183 -4.529 -0.135 O4 GY8 33 GY8 CL1 CL1 CL 0 0 N N N 125.379 103.902 285.710 -4.063 -1.133 -1.904 CL1 GY8 34 GY8 CL2 CL2 CL 0 0 N N N 129.984 106.478 284.411 -3.501 3.535 0.855 CL2 GY8 35 GY8 H1 H1 H 0 1 N N N 132.280 101.924 282.218 6.341 3.812 -1.242 H1 GY8 36 GY8 H2 H2 H 0 1 N N N 130.919 102.846 280.378 8.691 3.907 -0.518 H2 GY8 37 GY8 H3 H3 H 0 1 N N N 130.869 105.260 279.956 9.701 1.982 0.640 H3 GY8 38 GY8 H4 H4 H 0 1 N N N 132.205 106.801 281.348 8.360 -0.036 1.066 H4 GY8 39 GY8 H5 H5 H 0 1 N N N 133.514 102.760 284.615 3.916 2.017 -0.124 H5 GY8 40 GY8 H6 H6 H 0 1 N N N 134.929 103.284 283.640 4.358 1.849 -1.850 H6 GY8 41 GY8 H7 H7 H 0 1 N N N 127.811 101.384 287.669 -1.202 -0.649 4.080 H7 GY8 42 GY8 H8 H8 H 0 1 N N N 129.039 102.096 288.770 -1.950 -2.010 3.184 H8 GY8 43 GY8 H9 H9 H 0 1 N N N 129.928 100.380 286.958 -3.912 -0.930 4.068 H9 GY8 44 GY8 H10 H10 H 0 1 N N N 130.782 101.957 287.055 -3.188 0.705 3.909 H10 GY8 45 GY8 H11 H11 H 0 1 N N N 128.621 101.064 285.077 -4.197 -1.161 1.690 H11 GY8 46 GY8 H12 H12 H 0 1 N N N 130.162 101.925 284.745 -4.537 0.582 1.916 H12 GY8 47 GY8 H13 H13 H 0 1 N N N 128.325 108.544 285.352 -5.958 3.898 -0.546 H13 GY8 48 GY8 H14 H14 H 0 1 N N N 124.817 106.579 286.364 -6.380 0.351 -2.654 H14 GY8 49 GY8 H15 H15 H 0 1 N N N 127.412 103.682 287.289 -0.740 0.539 2.130 H15 GY8 50 GY8 H16 H16 H 0 1 N N N 134.858 105.031 285.315 4.642 -0.485 -1.677 H16 GY8 51 GY8 H17 H17 H 0 1 N N N 134.880 106.100 283.142 6.017 -1.316 0.052 H17 GY8 52 GY8 H18 H18 H 0 1 N N N 133.442 106.877 283.886 5.167 -0.369 1.310 H18 GY8 53 GY8 H19 H19 H 0 1 N N N 131.899 104.580 285.208 2.623 0.257 0.321 H19 GY8 54 GY8 H20 H20 H 0 1 N N N 128.085 105.240 289.055 -2.180 -2.675 1.162 H20 GY8 55 GY8 H21 H21 H 0 1 N N N 131.453 107.893 289.593 0.941 -4.911 -1.237 H21 GY8 56 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GY8 C14 C13 DOUB Y N 1 GY8 C14 C15 SING Y N 2 GY8 C13 C12 SING Y N 3 GY8 C15 C10 DOUB Y N 4 GY8 C12 C11 DOUB Y N 5 GY8 C10 C11 SING Y N 6 GY8 C10 C9 SING N N 7 GY8 C11 C16 SING N N 8 GY8 O1 C3 DOUB N N 9 GY8 C9 C8 SING N N 10 GY8 C16 C8 SING N N 11 GY8 CL2 C22 SING N N 12 GY8 C3 C2 SING N N 13 GY8 C3 N1 SING N N 14 GY8 C8 N3 SING N N 15 GY8 C22 C2 DOUB Y N 16 GY8 C22 C23 SING Y N 17 GY8 C2 C1 SING Y N 18 GY8 C23 N5 DOUB Y N 19 GY8 C21 N1 SING N N 20 GY8 C21 C20 SING N N 21 GY8 N3 C7 SING N N 22 GY8 C1 CL1 SING N N 23 GY8 C1 C24 DOUB Y N 24 GY8 N1 C4 SING N N 25 GY8 N5 C24 SING Y N 26 GY8 C7 O2 DOUB N N 27 GY8 C7 C6 SING N N 28 GY8 C20 C19 SING N N 29 GY8 N2 C6 SING N N 30 GY8 N2 C5 DOUB N N 31 GY8 C4 C5 SING N N 32 GY8 C4 C19 SING N N 33 GY8 C6 C17 DOUB N N 34 GY8 C5 N4 SING N N 35 GY8 C17 O3 SING N N 36 GY8 C17 C18 SING N N 37 GY8 N4 C18 SING N N 38 GY8 C18 O4 DOUB N N 39 GY8 C12 H1 SING N N 40 GY8 C13 H2 SING N N 41 GY8 C14 H3 SING N N 42 GY8 C15 H4 SING N N 43 GY8 C16 H5 SING N N 44 GY8 C16 H6 SING N N 45 GY8 C19 H7 SING N N 46 GY8 C19 H8 SING N N 47 GY8 C20 H9 SING N N 48 GY8 C20 H10 SING N N 49 GY8 C21 H11 SING N N 50 GY8 C21 H12 SING N N 51 GY8 C23 H13 SING N N 52 GY8 C24 H14 SING N N 53 GY8 C4 H15 SING N N 54 GY8 C8 H16 SING N N 55 GY8 C9 H17 SING N N 56 GY8 C9 H18 SING N N 57 GY8 N3 H19 SING N N 58 GY8 N4 H20 SING N N 59 GY8 O3 H21 SING N N 60 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GY8 SMILES ACDLabs 12.01 "c1(Cl)cncc(c1C(N5CCCC5C=4NC(C(O)=C(C(=O)NC2Cc3c(C2)cccc3)N=4)=O)=O)Cl" GY8 InChI InChI 1.03 "InChI=1S/C24H21Cl2N5O4/c25-15-10-27-11-16(26)18(15)24(35)31-7-3-6-17(31)21-29-19(20(32)23(34)30-21)22(33)28-14-8-12-4-1-2-5-13(12)9-14/h1-2,4-5,10-11,14,17,32H,3,6-9H2,(H,28,33)(H,29,30,34)/t17-/m0/s1" GY8 InChIKey InChI 1.03 NJMRSWDIFAMYDM-KRWDZBQOSA-N GY8 SMILES_CANONICAL CACTVS 3.385 "OC1=C(N=C(NC1=O)[C@@H]2CCCN2C(=O)c3c(Cl)cncc3Cl)C(=O)NC4Cc5ccccc5C4" GY8 SMILES CACTVS 3.385 "OC1=C(N=C(NC1=O)[CH]2CCCN2C(=O)c3c(Cl)cncc3Cl)C(=O)NC4Cc5ccccc5C4" GY8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc2c(c1)CC(C2)NC(=O)C3=C(C(=O)NC(=N3)[C@@H]4CCCN4C(=O)c5c(cncc5Cl)Cl)O" GY8 SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc2c(c1)CC(C2)NC(=O)C3=C(C(=O)NC(=N3)C4CCCN4C(=O)c5c(cncc5Cl)Cl)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GY8 "SYSTEMATIC NAME" ACDLabs 12.01 "2-[(2S)-1-(3,5-dichloropyridine-4-carbonyl)pyrrolidin-2-yl]-N-(2,3-dihydro-1H-inden-2-yl)-5-hydroxy-6-oxo-1,6-dihydropyrimidine-4-carboxamide" GY8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[(2~{S})-1-[3,5-bis(chloranyl)pyridin-4-yl]carbonylpyrrolidin-2-yl]-~{N}-(2,3-dihydro-1~{H}-inden-2-yl)-5-oxidanyl-6-oxidanylidene-1~{H}-pyrimidine-4-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GY8 "Create component" 2017-06-22 RCSB GY8 "Initial release" 2017-12-27 RCSB GY8 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id GY8 _pdbx_chem_comp_synonyms.name SRI-29928 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##