data_GYA # _chem_comp.id GYA _chem_comp.name ;2-[(2S)-1-{[(2-chlorophenyl)sulfanyl]acetyl}pyrrolidin-2-yl]-N-(5,6-dimethoxy-2,3-dihydro-1H-inden-2-yl)-5-hydroxy-6-ox o-1,6-dihydropyrimidine-4-carboxamide ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H29 Cl N4 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms SRI-30026 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-06-28 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 585.071 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GYA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5WB3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GYA C1 C1 C 0 1 N N N 130.403 106.263 286.962 -5.875 1.918 -0.377 C1 GYA 1 GYA C10 C2 C 0 1 N N N 133.213 99.845 279.646 5.841 3.358 -2.106 C10 GYA 2 GYA C11 C3 C 0 1 Y N N 134.817 99.834 282.923 4.925 1.616 0.991 C11 GYA 3 GYA C12 C4 C 0 1 N N N 135.822 97.680 282.873 6.132 0.588 2.764 C12 GYA 4 GYA C13 C5 C 0 1 Y N N 135.392 100.689 283.850 3.762 1.262 1.651 C13 GYA 5 GYA C14 C6 C 0 1 Y N N 135.479 102.041 283.543 2.527 1.590 1.113 C14 GYA 6 GYA C15 C7 C 0 1 N N N 136.046 103.177 284.351 1.131 1.320 1.633 C15 GYA 7 GYA C16 C8 C 0 1 N N N 130.238 104.115 285.910 -4.728 -0.119 -0.197 C16 GYA 8 GYA C17 C9 C 0 1 N N S 129.492 102.824 285.651 -4.766 -1.625 -0.235 C17 GYA 9 GYA C18 C10 C 0 1 N N N 129.893 102.257 283.274 -2.296 -1.959 -0.509 C18 GYA 10 GYA C19 C11 C 0 1 N N N 130.668 101.438 282.262 -1.020 -2.581 -0.002 C19 GYA 11 GYA C2 C12 C 0 1 N N N 131.646 106.396 286.349 -4.602 2.598 -0.106 C2 GYA 12 GYA C20 C13 C 0 1 Y N N 131.024 103.452 280.248 1.735 -2.921 -0.353 C20 GYA 13 GYA C21 C14 C 0 1 Y N N 131.533 104.212 281.302 1.565 -3.682 0.796 C21 GYA 14 GYA C22 C15 C 0 1 Y N N 132.081 105.457 281.055 2.651 -4.312 1.373 C22 GYA 15 GYA C23 C16 C 0 1 Y N N 132.131 105.953 279.770 3.907 -4.186 0.808 C23 GYA 16 GYA C24 C17 C 0 1 Y N N 131.637 105.214 278.718 4.081 -3.428 -0.337 C24 GYA 17 GYA C25 C18 C 0 1 Y N N 131.085 103.971 278.958 2.999 -2.801 -0.923 C25 GYA 18 GYA C26 C19 C 0 1 N N N 130.969 100.961 285.121 -3.617 -2.980 1.368 C26 GYA 19 GYA C27 C20 C 0 1 N N N 130.958 101.231 286.610 -5.103 -3.415 1.360 C27 GYA 20 GYA C28 C21 C 0 1 N N N 129.571 101.821 286.813 -5.795 -2.150 0.789 C28 GYA 21 GYA C3 C22 C 0 1 N N N 132.126 105.395 285.561 -3.481 1.810 0.099 C3 GYA 22 GYA C4 C23 C 0 1 N N N 133.469 105.529 284.903 -2.170 2.437 0.377 C4 GYA 23 GYA C5 C24 C 0 1 N N N 135.286 104.386 283.770 0.216 2.286 0.851 C5 GYA 24 GYA C6 C25 C 0 1 N N N 135.221 104.019 282.277 1.006 2.507 -0.456 C6 GYA 25 GYA C7 C26 C 0 1 Y N N 134.991 102.532 282.337 2.456 2.272 -0.087 C7 GYA 26 GYA C8 C27 C 0 1 Y N N 134.415 101.687 281.402 3.618 2.628 -0.751 C8 GYA 27 GYA C9 C28 C 0 1 Y N N 134.321 100.333 281.696 4.853 2.308 -0.215 C9 GYA 28 GYA N1 N1 N 0 1 N N N 133.943 104.434 284.314 -1.082 1.666 0.576 N1 GYA 29 GYA N2 N2 N 0 1 N N N 131.438 104.264 285.342 -3.595 0.471 0.044 N2 GYA 30 GYA N3 N3 N 0 1 N N N 130.114 102.027 284.579 -3.455 -2.169 0.147 N3 GYA 31 GYA N4 N4 N 0 1 N N N 129.717 105.093 286.717 -5.878 0.567 -0.405 N4 GYA 32 GYA O1 O1 O 0 1 N N N 129.900 107.128 287.694 -6.899 2.552 -0.567 O1 GYA 33 GYA O2 O2 O 0 1 N N N 132.314 107.531 286.593 -4.527 3.952 -0.059 O2 GYA 34 GYA O3 O3 O 0 1 N N N 133.776 99.388 280.872 5.993 2.659 -0.869 O3 GYA 35 GYA O4 O4 O 0 1 N N N 134.665 98.483 283.089 6.135 1.293 1.521 O4 GYA 36 GYA O5 O5 O 0 1 N N N 134.101 106.583 284.926 -2.073 3.648 0.426 O5 GYA 37 GYA O6 O6 O 0 1 N N N 129.082 103.103 282.910 -2.280 -1.270 -1.507 O6 GYA 38 GYA S1 S1 S 0 1 N N N 130.317 101.855 280.529 0.353 -2.116 -1.092 S1 GYA 39 GYA CL1 CL1 CL 0 0 N N N 130.468 103.068 277.616 3.218 -1.851 -2.359 CL1 GYA 40 GYA H1 H1 H 0 1 N N N 132.813 98.988 279.084 5.280 2.739 -2.807 H1 GYA 41 GYA H2 H2 H 0 1 N N N 132.401 100.556 279.858 5.304 4.290 -1.934 H2 GYA 42 GYA H3 H3 H 0 1 N N N 133.991 100.344 279.049 6.825 3.577 -2.523 H3 GYA 43 GYA H4 H4 H 0 1 N N N 135.570 96.622 283.036 5.631 1.190 3.522 H4 GYA 44 GYA H5 H5 H 0 1 N N N 136.176 97.817 281.841 5.603 -0.358 2.643 H5 GYA 45 GYA H6 H6 H 0 1 N N N 136.613 97.981 283.575 7.159 0.393 3.074 H6 GYA 46 GYA H7 H7 H 0 1 N N N 135.764 100.312 284.791 3.816 0.729 2.589 H7 GYA 47 GYA H8 H8 H 0 1 N N N 135.836 103.050 285.423 0.847 0.286 1.434 H8 GYA 48 GYA H9 H9 H 0 1 N N N 137.131 103.275 284.198 1.078 1.528 2.701 H9 GYA 49 GYA H10 H10 H 0 1 N N N 128.439 103.037 285.415 -5.033 -1.964 -1.236 H10 GYA 50 GYA H11 H11 H 0 1 N N N 130.421 100.377 282.417 -0.819 -2.225 1.008 H11 GYA 51 GYA H12 H12 H 0 1 N N N 131.742 101.595 282.443 -1.124 -3.666 0.009 H12 GYA 52 GYA H13 H13 H 0 1 N N N 131.499 103.828 282.311 0.585 -3.781 1.239 H13 GYA 53 GYA H14 H14 H 0 1 N N N 132.472 106.044 281.873 2.519 -4.904 2.267 H14 GYA 54 GYA H15 H15 H 0 1 N N N 132.560 106.927 279.587 4.754 -4.679 1.261 H15 GYA 55 GYA H16 H16 H 0 1 N N N 131.681 105.604 277.712 5.062 -3.335 -0.778 H16 GYA 56 GYA H17 H17 H 0 1 N N N 130.551 99.968 284.897 -3.401 -2.381 2.253 H17 GYA 57 GYA H18 H18 H 0 1 N N N 131.989 101.029 284.715 -2.965 -3.853 1.334 H18 GYA 58 GYA H19 H19 H 0 1 N N N 131.086 100.302 287.186 -5.256 -4.273 0.706 H19 GYA 59 GYA H20 H20 H 0 1 N N N 131.743 101.948 286.892 -5.453 -3.629 2.370 H20 GYA 60 GYA H21 H21 H 0 1 N N N 129.488 102.326 287.786 -5.966 -1.415 1.575 H21 GYA 61 GYA H22 H22 H 0 1 N N N 128.791 101.050 286.732 -6.731 -2.412 0.295 H22 GYA 62 GYA H23 H23 H 0 1 N N N 135.842 105.322 283.928 0.088 3.223 1.393 H23 GYA 63 GYA H24 H24 H 0 1 N N N 136.164 104.258 281.764 0.689 1.793 -1.215 H24 GYA 64 GYA H25 H25 H 0 1 N N N 134.389 104.533 281.774 0.868 3.527 -0.814 H25 GYA 65 GYA H26 H26 H 0 1 N N N 134.046 102.074 280.463 3.561 3.165 -1.686 H26 GYA 66 GYA H27 H27 H 0 1 N N N 133.359 103.625 284.245 -1.160 0.700 0.536 H27 GYA 67 GYA H28 H28 H 0 1 N N N 128.820 104.955 287.137 -6.702 0.087 -0.581 H28 GYA 68 GYA H29 H29 H 0 1 N N N 133.122 107.537 286.093 -5.370 4.398 -0.217 H29 GYA 69 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GYA CL1 C25 SING N N 1 GYA C24 C25 DOUB Y N 2 GYA C24 C23 SING Y N 3 GYA C25 C20 SING Y N 4 GYA C10 O3 SING N N 5 GYA C23 C22 DOUB Y N 6 GYA C20 S1 SING N N 7 GYA C20 C21 DOUB Y N 8 GYA S1 C19 SING N N 9 GYA O3 C9 SING N N 10 GYA C22 C21 SING Y N 11 GYA C8 C9 DOUB Y N 12 GYA C8 C7 SING Y N 13 GYA C9 C11 SING Y N 14 GYA C19 C18 SING N N 15 GYA C6 C7 SING N N 16 GYA C6 C5 SING N N 17 GYA C7 C14 DOUB Y N 18 GYA C12 O4 SING N N 19 GYA O6 C18 DOUB N N 20 GYA C11 O4 SING N N 21 GYA C11 C13 DOUB Y N 22 GYA C18 N3 SING N N 23 GYA C14 C13 SING Y N 24 GYA C14 C15 SING N N 25 GYA C5 N1 SING N N 26 GYA C5 C15 SING N N 27 GYA N1 C4 SING N N 28 GYA N3 C26 SING N N 29 GYA N3 C17 SING N N 30 GYA C4 O5 DOUB N N 31 GYA C4 C3 SING N N 32 GYA C26 C27 SING N N 33 GYA N2 C3 SING N N 34 GYA N2 C16 DOUB N N 35 GYA C3 C2 DOUB N N 36 GYA C17 C16 SING N N 37 GYA C17 C28 SING N N 38 GYA C16 N4 SING N N 39 GYA C2 O2 SING N N 40 GYA C2 C1 SING N N 41 GYA C27 C28 SING N N 42 GYA N4 C1 SING N N 43 GYA C1 O1 DOUB N N 44 GYA C10 H1 SING N N 45 GYA C10 H2 SING N N 46 GYA C10 H3 SING N N 47 GYA C12 H4 SING N N 48 GYA C12 H5 SING N N 49 GYA C12 H6 SING N N 50 GYA C13 H7 SING N N 51 GYA C15 H8 SING N N 52 GYA C15 H9 SING N N 53 GYA C17 H10 SING N N 54 GYA C19 H11 SING N N 55 GYA C19 H12 SING N N 56 GYA C21 H13 SING N N 57 GYA C22 H14 SING N N 58 GYA C23 H15 SING N N 59 GYA C24 H16 SING N N 60 GYA C26 H17 SING N N 61 GYA C26 H18 SING N N 62 GYA C27 H19 SING N N 63 GYA C27 H20 SING N N 64 GYA C28 H21 SING N N 65 GYA C28 H22 SING N N 66 GYA C5 H23 SING N N 67 GYA C6 H24 SING N N 68 GYA C6 H25 SING N N 69 GYA C8 H26 SING N N 70 GYA N1 H27 SING N N 71 GYA N4 H28 SING N N 72 GYA O2 H29 SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GYA SMILES ACDLabs 12.01 "C3(=O)C(O)=C(C(=O)NC2Cc1cc(OC)c(cc1C2)OC)N=C(N3)C4CCCN4C(CSc5ccccc5Cl)=O" GYA InChI InChI 1.03 "InChI=1S/C28H29ClN4O6S/c1-38-20-12-15-10-17(11-16(15)13-21(20)39-2)30-27(36)24-25(35)28(37)32-26(31-24)19-7-5-9-33(19)23(34)14-40-22-8-4-3-6-18(22)29/h3-4,6,8,12-13,17,19,35H,5,7,9-11,14H2,1-2H3,(H,30,36)(H,31,32,37)/t19-/m0/s1" GYA InChIKey InChI 1.03 DUURZOUMZXZFQN-IBGZPJMESA-N GYA SMILES_CANONICAL CACTVS 3.385 "COc1cc2CC(Cc2cc1OC)NC(=O)C3=C(O)C(=O)NC(=N3)[C@@H]4CCCN4C(=O)CSc5ccccc5Cl" GYA SMILES CACTVS 3.385 "COc1cc2CC(Cc2cc1OC)NC(=O)C3=C(O)C(=O)NC(=N3)[CH]4CCCN4C(=O)CSc5ccccc5Cl" GYA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "COc1cc2c(cc1OC)CC(C2)NC(=O)C3=C(C(=O)NC(=N3)[C@@H]4CCCN4C(=O)CSc5ccccc5Cl)O" GYA SMILES "OpenEye OEToolkits" 2.0.6 "COc1cc2c(cc1OC)CC(C2)NC(=O)C3=C(C(=O)NC(=N3)C4CCCN4C(=O)CSc5ccccc5Cl)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GYA "SYSTEMATIC NAME" ACDLabs 12.01 "2-[(2S)-1-{[(2-chlorophenyl)sulfanyl]acetyl}pyrrolidin-2-yl]-N-(5,6-dimethoxy-2,3-dihydro-1H-inden-2-yl)-5-hydroxy-6-oxo-1,6-dihydropyrimidine-4-carboxamide" GYA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[(2~{S})-1-[2-(2-chlorophenyl)sulfanylethanoyl]pyrrolidin-2-yl]-~{N}-(5,6-dimethoxy-2,3-dihydro-1~{H}-inden-2-yl)-5-oxidanyl-6-oxidanylidene-1~{H}-pyrimidine-4-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GYA "Create component" 2017-06-28 RCSB GYA "Initial release" 2018-01-03 RCSB GYA "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id GYA _pdbx_chem_comp_synonyms.name SRI-30026 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##