data_GYO # _chem_comp.id GYO _chem_comp.name "~{N}-[(1~{S},2~{S})-2-(2-methoxyphenyl)cyclopropyl]-3~{H}-benzimidazole-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H17 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-09 _chem_comp.pdbx_modified_date 2021-12-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 307.346 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GYO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7D8E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GYO C01 C1 C 0 1 Y N N 10.581 -9.158 127.774 -4.040 1.118 -0.142 C01 GYO 1 GYO C02 C2 C 0 1 Y N N 9.251 -9.371 128.109 -4.218 -0.156 0.427 C02 GYO 2 GYO C04 C3 C 0 1 Y N N 9.773 -10.693 126.464 -6.108 0.980 0.512 C04 GYO 3 GYO C06 C4 C 0 1 Y N N 11.454 -8.100 128.561 -2.788 1.482 -0.652 C06 GYO 4 GYO C07 C5 C 0 1 Y N N 10.822 -7.303 129.673 -1.748 0.605 -0.597 C07 GYO 5 GYO C08 C6 C 0 1 Y N N 9.402 -7.532 130.056 -1.918 -0.666 -0.032 C08 GYO 6 GYO C09 C7 C 0 1 Y N N 8.588 -8.553 129.277 -3.158 -1.044 0.481 C09 GYO 7 GYO C10 C8 C 0 1 N N N 8.839 -6.660 131.208 -0.782 -1.607 0.022 C10 GYO 8 GYO C13 C9 C 0 1 N N S 6.745 -8.111 131.802 1.546 -2.177 -0.420 C13 GYO 9 GYO C14 C10 C 0 1 N N S 5.449 -8.470 132.595 2.956 -1.583 -0.428 C14 GYO 10 GYO C15 C11 C 0 1 N N N 6.790 -9.023 133.011 2.421 -2.299 -1.670 C15 GYO 11 GYO C16 C12 C 0 1 Y N N 4.470 -7.981 133.689 3.078 -0.082 -0.490 C16 GYO 12 GYO C17 C13 C 0 1 Y N N 4.858 -8.030 135.174 2.551 0.611 -1.562 C17 GYO 13 GYO C18 C14 C 0 1 Y N N 3.872 -7.559 136.246 2.662 1.988 -1.619 C18 GYO 14 GYO C19 C15 C 0 1 Y N N 2.476 -7.073 135.821 3.302 2.675 -0.604 C19 GYO 15 GYO C20 C16 C 0 1 Y N N 2.079 -7.048 134.333 3.831 1.986 0.470 C20 GYO 16 GYO C21 C17 C 0 1 Y N N 3.081 -7.511 133.261 3.716 0.605 0.533 C21 GYO 17 GYO C23 C18 C 0 1 N N N 1.490 -8.106 131.655 4.873 0.698 2.607 C23 GYO 18 GYO N03 N1 N 0 1 Y N N 8.775 -10.317 127.314 -5.538 -0.211 0.831 N03 GYO 19 GYO N05 N2 N 0 1 Y N N 10.889 -9.973 126.770 -5.234 1.756 -0.062 N05 GYO 20 GYO N11 N3 N 0 1 N N N 7.614 -6.926 131.980 0.418 -1.243 -0.473 N11 GYO 21 GYO O12 O1 O 0 1 N N N 9.455 -5.671 131.466 -0.928 -2.710 0.512 O12 GYO 22 GYO O22 O2 O 0 1 N N N 2.753 -7.508 131.888 4.230 -0.074 1.591 O22 GYO 23 GYO H1 H1 H 0 1 N N N 9.693 -11.434 125.683 -7.139 1.242 0.700 H1 GYO 24 GYO H2 H2 H 0 1 N N N 12.492 -7.950 128.304 -2.647 2.459 -1.090 H2 GYO 25 GYO H3 H3 H 0 1 N N N 11.404 -6.559 130.197 -0.784 0.891 -0.992 H3 GYO 26 GYO H4 H4 H 0 1 N N N 7.550 -8.717 129.527 -3.290 -2.023 0.917 H4 GYO 27 GYO H5 H5 H 0 1 N N N 6.835 -8.623 130.833 1.383 -3.078 0.171 H5 GYO 28 GYO H6 H6 H 0 1 N N N 4.930 -9.253 132.023 3.720 -2.093 0.157 H6 GYO 29 GYO H7 H7 H 0 1 N N N 7.002 -10.094 132.877 2.833 -3.282 -1.901 H7 GYO 30 GYO H8 H8 H 0 1 N N N 7.259 -8.670 133.941 2.157 -1.686 -2.531 H8 GYO 31 GYO H9 H9 H 0 1 N N N 5.831 -8.398 135.463 2.051 0.077 -2.357 H9 GYO 32 GYO H10 H10 H 0 1 N N N 4.153 -7.568 137.289 2.250 2.528 -2.459 H10 GYO 33 GYO H11 H11 H 0 1 N N N 1.770 -6.747 136.570 3.388 3.750 -0.651 H11 GYO 34 GYO H12 H12 H 0 1 N N N 1.097 -6.705 134.042 4.331 2.523 1.263 H12 GYO 35 GYO H13 H13 H 0 1 N N N 1.268 -8.086 130.578 5.238 0.035 3.392 H13 GYO 36 GYO H14 H14 H 0 1 N N N 1.507 -9.148 132.007 5.711 1.244 2.174 H14 GYO 37 GYO H15 H15 H 0 1 N N N 0.714 -7.548 132.200 4.160 1.405 3.032 H15 GYO 38 GYO H16 H16 H 0 1 N N N 7.847 -10.690 127.333 -5.976 -0.960 1.265 H16 GYO 39 GYO H18 H18 H 0 1 N N N 7.350 -6.258 132.675 0.535 -0.363 -0.864 H18 GYO 40 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GYO C04 N05 DOUB Y N 1 GYO C04 N03 SING Y N 2 GYO N05 C01 SING Y N 3 GYO N03 C02 SING Y N 4 GYO C01 C02 DOUB Y N 5 GYO C01 C06 SING Y N 6 GYO C02 C09 SING Y N 7 GYO C06 C07 DOUB Y N 8 GYO C09 C08 DOUB Y N 9 GYO C07 C08 SING Y N 10 GYO C08 C10 SING N N 11 GYO C10 O12 DOUB N N 12 GYO C10 N11 SING N N 13 GYO C23 O22 SING N N 14 GYO C13 N11 SING N N 15 GYO C13 C14 SING N N 16 GYO C13 C15 SING N N 17 GYO O22 C21 SING N N 18 GYO C14 C15 SING N N 19 GYO C14 C16 SING N N 20 GYO C21 C16 DOUB Y N 21 GYO C21 C20 SING Y N 22 GYO C16 C17 SING Y N 23 GYO C20 C19 DOUB Y N 24 GYO C17 C18 DOUB Y N 25 GYO C19 C18 SING Y N 26 GYO C04 H1 SING N N 27 GYO C06 H2 SING N N 28 GYO C07 H3 SING N N 29 GYO C09 H4 SING N N 30 GYO C13 H5 SING N N 31 GYO C14 H6 SING N N 32 GYO C15 H7 SING N N 33 GYO C15 H8 SING N N 34 GYO C17 H9 SING N N 35 GYO C18 H10 SING N N 36 GYO C19 H11 SING N N 37 GYO C20 H12 SING N N 38 GYO C23 H13 SING N N 39 GYO C23 H14 SING N N 40 GYO C23 H15 SING N N 41 GYO N03 H16 SING N N 42 GYO N11 H18 SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GYO InChI InChI 1.03 "InChI=1S/C18H17N3O2/c1-23-17-5-3-2-4-12(17)13-9-15(13)21-18(22)11-6-7-14-16(8-11)20-10-19-14/h2-8,10,13,15H,9H2,1H3,(H,19,20)(H,21,22)/t13-,15-/m0/s1" GYO InChIKey InChI 1.03 ZKYVGLRMGWYWNE-ZFWWWQNUSA-N GYO SMILES_CANONICAL CACTVS 3.385 "COc1ccccc1[C@@H]2C[C@@H]2NC(=O)c3ccc4nc[nH]c4c3" GYO SMILES CACTVS 3.385 "COc1ccccc1[CH]2C[CH]2NC(=O)c3ccc4nc[nH]c4c3" GYO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccccc1[C@@H]2C[C@@H]2NC(=O)c3ccc4c(c3)[nH]cn4" GYO SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccccc1C2CC2NC(=O)c3ccc4c(c3)[nH]cn4" # _pdbx_chem_comp_identifier.comp_id GYO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(1~{S},2~{S})-2-(2-methoxyphenyl)cyclopropyl]-3~{H}-benzimidazole-5-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GYO "Create component" 2020-10-09 PDBJ GYO "Initial release" 2021-12-08 RCSB ##