data_GYP
#

_chem_comp.id                                   GYP
_chem_comp.name                                 "methyl alpha-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C7 H14 O6"
_chem_comp.mon_nstd_parent_comp_id              GLC
_chem_comp.pdbx_synonyms                        
;METHYL-ALPHA-D-GLUCOPYRANOSIDE; ALPHA-METHYL-D-GLUCOPYRANOSIDE; methyl alpha-D-glucoside; methyl D-glucoside; methyl
glucoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2003-03-06
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       194.182
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GYP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1HKD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  GYP  METHYL-ALPHA-D-GLUCOPYRANOSIDE    PDB  ?  
2  GYP  ALPHA-METHYL-D-GLUCOPYRANOSIDE    PDB  ?  
3  GYP  "methyl alpha-D-glucoside"        PDB  ?  
4  GYP  "methyl D-glucoside"              PDB  ?  
5  GYP  "methyl glucoside"                PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GYP  C1    C1    C  0  1  N  N  S  -15.590  48.045  -16.022   1.357  -0.509  -0.363  C1    GYP   1  
GYP  C2    C2    C  0  1  N  N  R  -14.345  48.282  -15.171   0.448  -0.643  -1.586  C2    GYP   2  
GYP  C3    C3    C  0  1  N  N  S  -13.260  47.253  -15.486  -0.780   0.250  -1.397  C3    GYP   3  
GYP  C4    C4    C  0  1  N  N  S  -13.826  45.842  -15.351  -1.437  -0.096  -0.057  C4    GYP   4  
GYP  C5    C5    C  0  1  N  N  R  -15.123  45.690  -16.144  -0.386  -0.003   1.051  C5    GYP   5  
GYP  C6    C6    C  0  1  N  N  N  -15.758  44.328  -15.913  -1.041  -0.316   2.398  C6    GYP   6  
GYP  C7    C7    C  0  1  N  N  N  -16.502  48.222  -18.228   2.592   0.916   0.942  C7    GYP   7  
GYP  O1    O1    O  0  1  N  N  N  -15.313  48.255  -17.418   1.746   0.856  -0.207  O1    GYP   8  
GYP  O2    O2    O  0  1  N  N  N  -13.824  49.602  -15.390   1.159  -0.238  -2.757  O2    GYP   9  
GYP  O3    O3    O  0  1  N  N  N  -12.153  47.434  -14.587  -1.710   0.025  -2.459  O3    GYP  10  
GYP  O4    O4    O  0  1  N  N  N  -12.863  44.916  -15.865  -2.497   0.823   0.210  O4    GYP  11  
GYP  O5    O5    O  0  1  N  N  N  -16.068  46.711  -15.800   0.660  -0.940   0.804  O5    GYP  12  
GYP  O6    O6    O  0  1  N  N  N  -16.269  44.257  -14.580  -0.063  -0.223   3.436  O6    GYP  13  
GYP  H1    H1    H  0  1  N  N  N  -16.365  48.767  -15.726   2.245  -1.126  -0.502  H1    GYP  14  
GYP  H2    H2    H  0  1  N  N  N  -14.641  48.178  -14.117   0.131  -1.681  -1.693  H2    GYP  15  
GYP  H3    H3    H  0  1  N  N  N  -12.911  47.394  -16.520  -0.474   1.297  -1.395  H3    GYP  16  
GYP  H4    H4    H  0  1  N  N  N  -14.040  45.646  -14.290  -1.836  -1.110  -0.097  H4    GYP  17  
GYP  H5    H5    H  0  1  N  N  N  -14.857  45.788  -17.207   0.026   1.004   1.075  H5    GYP  18  
GYP  H61   H6C1  H  0  1  N  N  N  -16.580  44.181  -16.629  -1.841   0.398   2.588  H61   GYP  19  
GYP  H62   H6C2  H  0  1  N  N  N  -15.001  43.543  -16.056  -1.453  -1.325   2.376  H62   GYP  20  
GYP  H7C1  H7C1  H  0  0  N  N  N  -16.786  47.177  -18.421   2.916   1.945   1.101  H7C1  GYP  21  
GYP  H7C2  H7C2  H  0  0  N  N  N  -17.320  48.732  -17.699   2.041   0.569   1.816  H7C2  GYP  22  
GYP  H7C3  H7C3  H  0  0  N  N  N  -16.309  48.732  -19.183   3.464   0.281   0.786  H7C3  GYP  23  
GYP  HO2   HA    H  0  1  N  Y  N  -14.574  50.240  -15.496   1.923  -0.825  -2.838  HO2   GYP  24  
GYP  HO3   HB    H  0  1  N  Y  N  -11.807  46.550  -14.306  -1.256   0.255  -3.282  HO3   GYP  25  
GYP  HO4   HC    H  0  1  N  Y  N  -13.173  43.991  -15.699  -3.135   0.732  -0.510  HO4   GYP  26  
GYP  HO6   H6    H  0  1  N  Y  N  -16.371  43.308  -14.315  -0.516  -0.427   4.266  HO6   GYP  27  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GYP  C1  C2    SING  N  N   1  
GYP  C1  O1    SING  N  N   2  
GYP  C1  O5    SING  N  N   3  
GYP  C1  H1    SING  N  N   4  
GYP  C2  C3    SING  N  N   5  
GYP  C2  O2    SING  N  N   6  
GYP  C2  H2    SING  N  N   7  
GYP  C3  C4    SING  N  N   8  
GYP  C3  O3    SING  N  N   9  
GYP  C3  H3    SING  N  N  10  
GYP  C4  C5    SING  N  N  11  
GYP  C4  O4    SING  N  N  12  
GYP  C4  H4    SING  N  N  13  
GYP  C5  C6    SING  N  N  14  
GYP  C5  O5    SING  N  N  15  
GYP  C5  H5    SING  N  N  16  
GYP  C6  O6    SING  N  N  17  
GYP  C6  H61   SING  N  N  18  
GYP  C6  H62   SING  N  N  19  
GYP  C7  O1    SING  N  N  20  
GYP  C7  H7C1  SING  N  N  21  
GYP  C7  H7C2  SING  N  N  22  
GYP  C7  H7C3  SING  N  N  23  
GYP  O2  HO2   SING  N  N  24  
GYP  O3  HO3   SING  N  N  25  
GYP  O4  HO4   SING  N  N  26  
GYP  O6  HO6   SING  N  N  27  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GYP  SMILES            ACDLabs               10.04  "OC1C(O)C(O)C(OC1OC)CO"  
GYP  SMILES_CANONICAL  CACTVS                3.341  "CO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O"  
GYP  SMILES            CACTVS                3.341  "CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O"  
GYP  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CO[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O"  
GYP  SMILES            "OpenEye OEToolkits"  1.5.0  "COC1C(C(C(C(O1)CO)O)O)O"  
GYP  InChI             InChI                 1.03   "InChI=1S/C7H14O6/c1-12-7-6(11)5(10)4(9)3(2-8)13-7/h3-11H,2H2,1H3/t3-,4-,5+,6-,7+/m1/s1"  
GYP  InChIKey          InChI                 1.03   HOVAGTYPODGVJG-ZFYZTMLRSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GYP  "SYSTEMATIC NAME"                      ACDLabs               10.04  "methyl alpha-D-glucopyranoside"  
GYP  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.5.0  "(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-methoxy-oxane-3,4,5-triol"  
GYP  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DGlcp[1Me]a  
GYP  "COMMON NAME"                          GMML                  1.0    1-methyl-a-D-glucopyranose  
GYP  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    methyl-a-D-glucopyranoside  
#
_pdbx_chem_comp_related.comp_id            GYP
_pdbx_chem_comp_related.related_comp_id    GLC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  GYP  C1   GLC  C1   "Carbohydrate core"  
 2  GYP  C2   GLC  C2   "Carbohydrate core"  
 3  GYP  C3   GLC  C3   "Carbohydrate core"  
 4  GYP  C4   GLC  C4   "Carbohydrate core"  
 5  GYP  C5   GLC  C5   "Carbohydrate core"  
 6  GYP  C6   GLC  C6   "Carbohydrate core"  
 7  GYP  O1   GLC  O1   "Carbohydrate core"  
 8  GYP  O2   GLC  O2   "Carbohydrate core"  
 9  GYP  O3   GLC  O3   "Carbohydrate core"  
10  GYP  O4   GLC  O4   "Carbohydrate core"  
11  GYP  O5   GLC  O5   "Carbohydrate core"  
12  GYP  O6   GLC  O6   "Carbohydrate core"  
13  GYP  H1   GLC  H1   "Carbohydrate core"  
14  GYP  H2   GLC  H2   "Carbohydrate core"  
15  GYP  H3   GLC  H3   "Carbohydrate core"  
16  GYP  H4   GLC  H4   "Carbohydrate core"  
17  GYP  H5   GLC  H5   "Carbohydrate core"  
18  GYP  HO6  GLC  HO6  "Carbohydrate core"  
19  GYP  H61  GLC  H61  "Carbohydrate core"  
20  GYP  H62  GLC  H62  "Carbohydrate core"  
21  GYP  HO2  GLC  HO2  "Carbohydrate core"  
22  GYP  HO3  GLC  HO3  "Carbohydrate core"  
23  GYP  HO4  GLC  HO4  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
GYP  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
GYP  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
GYP  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
GYP  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GYP  "Create component"          2003-03-06  EBI   
GYP  "Modify descriptor"         2011-06-04  RCSB  
GYP  "Other modification"        2020-07-03  RCSB  
GYP  "Modify parent residue"     2020-07-17  RCSB  
GYP  "Modify name"               2020-07-17  RCSB  
GYP  "Modify synonyms"           2020-07-17  RCSB  
GYP  "Modify linking type"       2020-07-17  RCSB  
GYP  "Modify atom id"            2020-07-17  RCSB  
GYP  "Modify component atom id"  2020-07-17  RCSB  
GYP  "Modify leaving atom flag"  2020-07-17  RCSB  
##