data_GYU # _chem_comp.id GYU _chem_comp.name "2-acetamido-2-deoxy-1-O-(propylcarbamoyl)-alpha-D-glucopyranose" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C12 H22 N2 O7" _chem_comp.mon_nstd_parent_comp_id PA1 _chem_comp.pdbx_synonyms ;2-(ACETYLAMINO)-2-DEOXY-1-O-(PROPYLCARBAMOYL)-ALPHA-D-GLUCOPYRANOSE; N-acetyl-1-O-(propylcarbamoyl)-alpha-D-glucosamine; 2-acetamido-2-deoxy-1-O-(propylcarbamoyl)-alpha-D-glucose; 2-acetamido-2-deoxy-1-O-(propylcarbamoyl)-D-glucose; 2-acetamido-2-deoxy-1-O-(propylcarbamoyl)-glucose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-03-21 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 306.312 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GYU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye OEToolkits" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2UWG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 GYU "2-(ACETYLAMINO)-2-DEOXY-1-O-(PROPYLCARBAMOYL)-ALPHA-D-GLUCOPYRANOSE" PDB ? 2 GYU "N-acetyl-1-O-(propylcarbamoyl)-alpha-D-glucosamine" PDB ? 3 GYU "2-acetamido-2-deoxy-1-O-(propylcarbamoyl)-alpha-D-glucose" PDB ? 4 GYU "2-acetamido-2-deoxy-1-O-(propylcarbamoyl)-D-glucose" PDB ? 5 GYU "2-acetamido-2-deoxy-1-O-(propylcarbamoyl)-glucose" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GYU C1A C1 C 0 1 N N N -6.195 42.927 5.040 1.383 1.915 3.274 C1A GYU 1 GYU O1A O1A O 0 1 N N N -6.582 44.075 5.294 2.317 1.617 4.011 O1A GYU 2 GYU O1 O1B O 0 1 N N N -7.107 41.881 5.000 1.289 1.548 1.958 O1 GYU 3 GYU C12 C12 C 0 1 N N N -3.862 43.579 4.786 0.073 3.202 4.956 C12 GYU 4 GYU C13 C13 C 0 1 N N N -3.139 43.611 6.120 0.664 4.598 5.110 C13 GYU 5 GYU C14 C14 C 0 1 N N N -2.448 42.292 6.459 0.044 5.608 4.156 C14 GYU 6 GYU C2 C5 C 0 1 N N N -8.441 40.526 6.363 2.137 0.436 -0.031 C2 GYU 7 GYU N2 N5 N 0 1 N N N -7.194 40.018 6.862 1.961 1.638 -0.813 N2 GYU 8 GYU C10 C10 C 0 1 N N N -7.033 39.704 8.181 3.014 2.331 -1.384 C10 GYU 9 GYU O10 O10 O 0 1 N N N -7.955 39.824 8.981 4.201 2.037 -1.311 O10 GYU 10 GYU C11 C11 C 0 1 N N N -5.659 39.178 8.598 2.600 3.542 -2.151 C11 GYU 11 GYU C3 C6 C 0 1 N N N -8.812 39.671 5.137 0.949 -0.515 -0.197 C3 GYU 12 GYU O3 O6 O 0 1 N N N -9.055 38.315 5.610 0.906 -0.961 -1.554 O3 GYU 13 GYU C4 C7 C 0 1 N N N -10.028 40.220 4.471 1.107 -1.734 0.716 C4 GYU 14 GYU O4 O7 O 0 1 N N N -10.251 39.435 3.278 -0.109 -2.477 0.674 O4 GYU 15 GYU C1 C15 C 0 1 N N N -8.280 41.985 5.853 2.368 0.767 1.447 C1 GYU 16 GYU O5 O8 O 0 1 N N N -9.436 42.442 5.255 2.557 -0.438 2.193 O5 GYU 17 GYU NAC NAC N 0 1 N N N -4.960 42.563 4.811 0.280 2.660 3.632 NAC GYU 18 GYU C5 C8 C 0 1 N N N -9.832 41.701 4.066 1.425 -1.314 2.156 C5 GYU 19 GYU C6 C9 C 0 1 N N N -11.154 42.279 3.648 1.759 -2.511 3.042 C6 GYU 20 GYU O6 O9 O 0 1 N N N -10.981 43.653 3.195 2.050 -2.040 4.344 O6 GYU 21 GYU HAC HAC H 0 1 N N N -4.748 41.599 4.651 -0.428 2.839 2.926 HAC GYU 22 GYU H1 H15 H 0 1 N N N -8.128 42.748 6.631 3.277 1.368 1.559 H1 GYU 23 GYU H121 H121 H 0 0 N N N -4.293 44.571 4.585 0.550 2.513 5.661 H121 GYU 24 GYU H122 H122 H 0 0 N N N -3.144 43.309 3.997 -1.003 3.202 5.154 H122 GYU 25 GYU H131 H131 H 0 0 N N N -2.374 44.401 6.079 0.499 4.940 6.139 H131 GYU 26 GYU H132 H132 H 0 0 N N N -3.892 43.798 6.899 1.748 4.568 4.948 H132 GYU 27 GYU H141 H141 H 0 0 N N N -2.282 41.717 5.536 -1.040 5.670 4.300 H141 GYU 28 GYU H142 H142 H 0 0 N N N -1.481 42.498 6.941 0.465 6.603 4.334 H142 GYU 29 GYU H143 H143 H 0 0 N N N -3.083 41.711 7.144 0.239 5.343 3.112 H143 GYU 30 GYU H2 H5 H 0 1 N N N -9.195 40.495 7.164 3.032 -0.052 -0.435 H2 GYU 31 GYU HN21 HA H 0 0 N N N -6.428 39.892 6.231 1.019 1.992 -0.952 HN21 GYU 32 GYU H3 H6 H 0 1 N N N -7.998 39.679 4.397 -0.003 -0.005 -0.003 H3 GYU 33 GYU H111 H111 H 0 0 N N N -5.028 39.052 7.706 3.057 4.465 -1.758 H111 GYU 34 GYU H112 H112 H 0 0 N N N -5.185 39.895 9.284 2.905 3.494 -3.209 H112 GYU 35 GYU H113 H113 H 0 0 N N N -5.776 38.208 9.104 1.517 3.741 -2.170 H113 GYU 36 GYU HO3 HB H 0 1 N Y N -9.108 37.725 4.867 1.705 -1.490 -1.693 HO3 GYU 37 GYU H4 H7 H 0 1 N N N -10.881 40.171 5.164 1.900 -2.383 0.324 H4 GYU 38 GYU HO4 HC H 0 1 N Y N -10.300 40.011 2.524 -0.383 -2.504 -0.255 HO4 GYU 39 GYU H5 H8 H 0 1 N N N -9.089 41.765 3.257 0.560 -0.813 2.608 H5 GYU 40 GYU H61 H9C1 H 0 1 N N N -11.570 41.676 2.827 2.628 -3.035 2.645 H61 GYU 41 GYU H62 H9C2 H 0 1 N N N -11.840 42.268 4.508 0.907 -3.190 3.085 H62 GYU 42 GYU HO6 H9 H 0 1 N Y N -10.943 44.232 3.947 2.976 -2.268 4.531 HO6 GYU 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GYU C1A O1A DOUB N N 1 GYU C1A O1 SING N N 2 GYU C12 C13 SING N N 3 GYU C13 C14 SING N N 4 GYU C2 N2 SING N N 5 GYU N2 C10 SING N N 6 GYU C10 O10 DOUB N N 7 GYU C10 C11 SING N N 8 GYU C2 C3 SING N N 9 GYU C3 O3 SING N N 10 GYU C3 C4 SING N N 11 GYU C4 O4 SING N N 12 GYU O1 C1 SING N N 13 GYU C2 C1 SING N N 14 GYU C1 O5 SING N N 15 GYU C1A NAC SING N N 16 GYU C12 NAC SING N N 17 GYU C4 C5 SING N N 18 GYU O5 C5 SING N N 19 GYU C5 C6 SING N N 20 GYU C6 O6 SING N N 21 GYU NAC HAC SING N N 22 GYU C1 H1 SING N N 23 GYU C12 H121 SING N N 24 GYU C12 H122 SING N N 25 GYU C13 H131 SING N N 26 GYU C13 H132 SING N N 27 GYU C14 H141 SING N N 28 GYU C14 H142 SING N N 29 GYU C14 H143 SING N N 30 GYU C2 H2 SING N N 31 GYU N2 HN21 SING N N 32 GYU C3 H3 SING N N 33 GYU C11 H111 SING N N 34 GYU C11 H112 SING N N 35 GYU C11 H113 SING N N 36 GYU O3 HO3 SING N N 37 GYU C4 H4 SING N N 38 GYU O4 HO4 SING N N 39 GYU C5 H5 SING N N 40 GYU C6 H61 SING N N 41 GYU C6 H62 SING N N 42 GYU O6 HO6 SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GYU SMILES ACDLabs 10.04 "O=C(OC1OC(C(O)C(O)C1NC(=O)C)CO)NCCC" GYU SMILES_CANONICAL CACTVS 3.341 "CCCNC(=O)O[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1NC(C)=O" GYU SMILES CACTVS 3.341 "CCCNC(=O)O[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1NC(C)=O" GYU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCNC(=O)O[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)NC(=O)C" GYU SMILES "OpenEye OEToolkits" 1.5.0 "CCCNC(=O)OC1C(C(C(C(O1)CO)O)O)NC(=O)C" GYU InChI InChI 1.03 "InChI=1S/C12H22N2O7/c1-3-4-13-12(19)21-11-8(14-6(2)16)10(18)9(17)7(5-15)20-11/h7-11,15,17-18H,3-5H2,1-2H3,(H,13,19)(H,14,16)/t7-,8-,9-,10-,11-/m1/s1" GYU InChIKey InChI 1.03 WEAGJSCGQDTQRE-ISUQUUIWSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GYU "SYSTEMATIC NAME" ACDLabs 10.04 "2-(acetylamino)-2-deoxy-1-O-(propylcarbamoyl)-alpha-D-glucopyranose" GYU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R,5S,6R)-3-acetamido-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl] N-propylcarbamate" # _pdbx_chem_comp_related.comp_id GYU _pdbx_chem_comp_related.related_comp_id PA1 _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 GYU C1 PA1 C1 "Carbohydrate core" 2 GYU C2 PA1 C2 "Carbohydrate core" 3 GYU C3 PA1 C3 "Carbohydrate core" 4 GYU C4 PA1 C4 "Carbohydrate core" 5 GYU C5 PA1 C5 "Carbohydrate core" 6 GYU C6 PA1 C6 "Carbohydrate core" 7 GYU N2 PA1 N2 "Carbohydrate core" 8 GYU O1 PA1 O1 "Carbohydrate core" 9 GYU O3 PA1 O3 "Carbohydrate core" 10 GYU O4 PA1 O4 "Carbohydrate core" 11 GYU O5 PA1 O5 "Carbohydrate core" 12 GYU O6 PA1 O6 "Carbohydrate core" 13 GYU H1 PA1 H1 "Carbohydrate core" 14 GYU H2 PA1 H2 "Carbohydrate core" 15 GYU H3 PA1 H3 "Carbohydrate core" 16 GYU H4 PA1 H4 "Carbohydrate core" 17 GYU H5 PA1 H5 "Carbohydrate core" 18 GYU HO6 PA1 HO6 "Carbohydrate core" 19 GYU H61 PA1 H61 "Carbohydrate core" 20 GYU H62 PA1 H62 "Carbohydrate core" 21 GYU HN21 PA1 HN21 "Carbohydrate core" 22 GYU HO3 PA1 HO3 "Carbohydrate core" 23 GYU HO4 PA1 HO4 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support GYU "CARBOHYDRATE ISOMER" D PDB ? GYU "CARBOHYDRATE RING" pyranose PDB ? GYU "CARBOHYDRATE ANOMER" alpha PDB ? GYU "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GYU "Create component" 2007-03-21 EBI GYU "Modify descriptor" 2011-06-04 RCSB GYU "Other modification" 2020-07-03 RCSB GYU "Modify parent residue" 2020-07-17 RCSB GYU "Modify name" 2020-07-17 RCSB GYU "Modify synonyms" 2020-07-17 RCSB GYU "Modify internal type" 2020-07-17 RCSB GYU "Modify linking type" 2020-07-17 RCSB GYU "Modify atom id" 2020-07-17 RCSB GYU "Modify component atom id" 2020-07-17 RCSB GYU "Modify leaving atom flag" 2020-07-17 RCSB ##