data_GYV # _chem_comp.id GYV _chem_comp.name 2-acetamido-1-O-carbamoyl-2-deoxy-alpha-D-glucopyranose _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C9 H16 N2 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;2-(ACETYLAMINO)-1-O-CARBAMOYL-2-DEOXY-ALPHA-D-GLUCOPYRANOSE; 2-acetamido-1-O-carbamoyl-2-deoxy-alpha-D-glucose; 2-acetamido-1-O-carbamoyl-2-deoxy-D-glucose; 2-acetamido-1-O-carbamoyl-2-deoxy-glucose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-01-26 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 264.233 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GYV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2X3T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 GYV "2-(ACETYLAMINO)-1-O-CARBAMOYL-2-DEOXY-ALPHA-D-GLUCOPYRANOSE" PDB ? 2 GYV 2-acetamido-1-O-carbamoyl-2-deoxy-alpha-D-glucose PDB ? 3 GYV 2-acetamido-1-O-carbamoyl-2-deoxy-D-glucose PDB ? 4 GYV 2-acetamido-1-O-carbamoyl-2-deoxy-glucose PDB ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GYV ND3 ND3 N 0 1 N N N N N N 22.266 27.065 42.329 0.532 3.298 1.746 ND3 GYV 1 GYV C1A C1 C 0 1 N N N N N N 22.714 27.873 43.265 0.383 2.560 0.628 C1A GYV 2 GYV O1A O1A O 0 1 N N N N N N 23.042 27.557 44.350 0.669 3.032 -0.454 O1A GYV 3 GYV O1 O1B O 0 1 N N N N N N 22.852 29.278 43.046 -0.083 1.299 0.711 O1 GYV 4 GYV C1 C15 C 0 1 N N R N N N 23.322 29.983 44.157 -0.217 0.563 -0.533 C1 GYV 5 GYV O5 O8 O 0 1 N N N N N N 24.538 30.559 43.740 1.080 0.258 -1.049 O5 GYV 6 GYV C5 C8 C 0 1 N N R N N N 24.595 31.830 43.062 1.893 -0.516 -0.164 C5 GYV 7 GYV C6 C9 C 0 1 N N N N N N 25.882 32.534 43.444 3.260 -0.756 -0.806 C6 GYV 8 GYV O6 O9 O 0 1 N N N N N N 26.832 32.411 42.396 3.943 0.491 -0.954 O6 GYV 9 GYV C4 C7 C 0 1 N N S N N N 23.415 32.756 43.310 1.213 -1.860 0.107 C4 GYV 10 GYV O4 O7 O 0 1 N N N N N N 23.228 33.708 42.291 1.995 -2.612 1.038 O4 GYV 11 GYV C3 C6 C 0 1 N N R N N N 22.210 31.917 43.252 -0.180 -1.610 0.694 C3 GYV 12 GYV O3 O6 O 0 1 N N N N N N 21.138 32.825 43.293 -0.851 -2.857 0.882 O3 GYV 13 GYV C2 C5 C 0 1 N N R N N N 22.357 31.096 44.491 -0.982 -0.738 -0.277 C2 GYV 14 GYV N2 N5 N 0 1 N N N N N N 21.056 30.535 44.746 -2.290 -0.430 0.308 N5 GYV 15 GYV C10 C10 C 0 1 N N N N N N 20.453 30.678 45.908 -3.331 -0.128 -0.493 C10 GYV 16 GYV O10 O10 O 0 1 N N N N N N 20.939 31.278 46.802 -3.186 -0.111 -1.697 O10 GYV 17 GYV C11 C11 C 0 1 N N N N N N 19.126 30.052 46.071 -4.676 0.189 0.108 C11 GYV 18 GYV HD31 HD31 H 0 0 N N N N N N 22.212 26.103 42.597 0.867 4.206 1.687 HD31 GYV 19 GYV HD32 HD32 H 0 0 N N N N N N 22.000 27.387 41.420 0.300 2.922 2.610 HD32 GYV 20 GYV H1 H15 H 0 1 N N N N N N 23.435 29.334 45.038 -0.763 1.169 -1.257 H1 GYV 21 GYV H2 H5 H 0 1 N N N N N N 22.718 31.669 45.358 -1.119 -1.271 -1.217 H2 GYV 22 GYV H5 H8 H 0 1 N N N N N N 24.555 31.597 41.988 2.022 0.023 0.775 H5 GYV 23 GYV H61 H91C H 0 1 N N N N N N 25.674 33.599 43.623 3.848 -1.419 -0.171 H61 GYV 24 GYV H62 H92C H 0 1 N N N N N N 26.289 32.074 44.356 3.126 -1.215 -1.786 H62 GYV 25 GYV H4 H7 H 0 1 N N N N N N 23.597 33.274 44.263 1.121 -2.417 -0.825 H4 GYV 26 GYV HO6 H9 H 0 1 N Y N N N N 26.381 32.384 41.560 4.819 0.414 -1.355 HO6 GYV 27 GYV HO4 HA H 0 1 N Y N N N N 23.186 34.577 42.673 2.892 -2.803 0.733 HO4 GYV 28 GYV H3 H6 H 0 1 N N N N N N 22.058 31.267 42.377 -0.085 -1.098 1.652 H3 GYV 29 GYV HO3 HB H 0 1 N Y N N N N 20.930 33.030 44.197 -0.394 -3.463 1.482 HO3 GYV 30 GYV HN2 HC H 0 1 N N N N N N 20.597 30.022 44.020 -2.406 -0.444 1.270 HC GYV 31 GYV H111 H111 H 0 0 N N N N N N 18.922 29.896 47.141 -4.587 1.056 0.763 H111 GYV 32 GYV H112 H112 H 0 0 N N N N N N 18.355 30.710 45.643 -5.388 0.407 -0.688 H112 GYV 33 GYV H113 H113 H 0 0 N N N N N N 19.112 29.083 45.550 -5.027 -0.667 0.685 H113 GYV 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GYV ND3 C1A SING N N 1 GYV C1A O1A DOUB N N 2 GYV C1A O1 SING N N 3 GYV O1 C1 SING N N 4 GYV C1 O5 SING N N 5 GYV C1 C2 SING N N 6 GYV O5 C5 SING N N 7 GYV C5 C6 SING N N 8 GYV C5 C4 SING N N 9 GYV C6 O6 SING N N 10 GYV C4 O4 SING N N 11 GYV C4 C3 SING N N 12 GYV C3 O3 SING N N 13 GYV C3 C2 SING N N 14 GYV C2 N2 SING N N 15 GYV N2 C10 SING N N 16 GYV C10 O10 DOUB N N 17 GYV C10 C11 SING N N 18 GYV ND3 HD31 SING N N 19 GYV ND3 HD32 SING N N 20 GYV C1 H1 SING N N 21 GYV C2 H2 SING N N 22 GYV C5 H5 SING N N 23 GYV C6 H61 SING N N 24 GYV C6 H62 SING N N 25 GYV C4 H4 SING N N 26 GYV O6 HO6 SING N N 27 GYV O4 HO4 SING N N 28 GYV C3 H3 SING N N 29 GYV O3 HO3 SING N N 30 GYV N2 HN2 SING N N 31 GYV C11 H111 SING N N 32 GYV C11 H112 SING N N 33 GYV C11 H113 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GYV SMILES ACDLabs 10.04 "O=C(OC1OC(C(O)C(O)C1NC(=O)C)CO)N" GYV SMILES_CANONICAL CACTVS 3.352 "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1OC(N)=O" GYV SMILES CACTVS 3.352 "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1OC(N)=O" GYV SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1OC(=O)N)CO)O)O" GYV SMILES "OpenEye OEToolkits" 1.6.1 "CC(=O)NC1C(C(C(OC1OC(=O)N)CO)O)O" GYV InChI InChI 1.03 "InChI=1S/C9H16N2O7/c1-3(13)11-5-7(15)6(14)4(2-12)17-8(5)18-9(10)16/h4-8,12,14-15H,2H2,1H3,(H2,10,16)(H,11,13)/t4-,5-,6-,7-,8-/m1/s1" GYV InChIKey InChI 1.03 BMFDLZBABRHLIB-FMDGEEDCSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GYV "SYSTEMATIC NAME" ACDLabs 10.04 "2-(acetylamino)-1-O-carbamoyl-2-deoxy-alpha-D-glucopyranose" GYV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(2R,3R,4R,5S,6R)-3-acetamido-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl] carbamate" GYV "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 methyl-a-D-glucopyranoside # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support GYV "CARBOHYDRATE ISOMER" D PDB ? GYV "CARBOHYDRATE RING" pyranose PDB ? GYV "CARBOHYDRATE ANOMER" alpha PDB ? GYV "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GYV "Create component" 2010-01-26 EBI GYV "Modify descriptor" 2011-06-04 RCSB GYV "Other modification" 2020-07-03 RCSB GYV "Modify name" 2020-07-17 RCSB GYV "Modify synonyms" 2020-07-17 RCSB GYV "Modify linking type" 2020-07-17 RCSB GYV "Modify atom id" 2020-07-17 RCSB GYV "Modify component atom id" 2020-07-17 RCSB GYV "Modify leaving atom flag" 2020-07-17 RCSB GYV "Modify name" 2020-07-18 RCSB GYV "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id GYV _pdbx_chem_comp_pcm.modified_residue_id DBB _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Carbohydrate _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ND3 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom CG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #