data_GYV
# 
_chem_comp.id                                    GYV 
_chem_comp.name                                  2-acetamido-1-O-carbamoyl-2-deoxy-alpha-D-glucopyranose 
_chem_comp.type                                  D-saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C9 H16 N2 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         
;2-(ACETYLAMINO)-1-O-CARBAMOYL-2-DEOXY-ALPHA-D-GLUCOPYRANOSE;
2-acetamido-1-O-carbamoyl-2-deoxy-alpha-D-glucose;
2-acetamido-1-O-carbamoyl-2-deoxy-D-glucose;
2-acetamido-1-O-carbamoyl-2-deoxy-glucose
;
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-01-26 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        264.233 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GYV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2X3T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 GYV "2-(ACETYLAMINO)-1-O-CARBAMOYL-2-DEOXY-ALPHA-D-GLUCOPYRANOSE" PDB ? 
2 GYV 2-acetamido-1-O-carbamoyl-2-deoxy-alpha-D-glucose             PDB ? 
3 GYV 2-acetamido-1-O-carbamoyl-2-deoxy-D-glucose                   PDB ? 
4 GYV 2-acetamido-1-O-carbamoyl-2-deoxy-glucose                     PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GYV ND3  ND3  N 0 1 N N N N N N 22.266 27.065 42.329 0.532  3.298  1.746  ND3  GYV 1  
GYV C1A  C1   C 0 1 N N N N N N 22.714 27.873 43.265 0.383  2.560  0.628  C1A  GYV 2  
GYV O1A  O1A  O 0 1 N N N N N N 23.042 27.557 44.350 0.669  3.032  -0.454 O1A  GYV 3  
GYV O1   O1B  O 0 1 N N N N N N 22.852 29.278 43.046 -0.083 1.299  0.711  O1   GYV 4  
GYV C1   C15  C 0 1 N N R N N N 23.322 29.983 44.157 -0.217 0.563  -0.533 C1   GYV 5  
GYV O5   O8   O 0 1 N N N N N N 24.538 30.559 43.740 1.080  0.258  -1.049 O5   GYV 6  
GYV C5   C8   C 0 1 N N R N N N 24.595 31.830 43.062 1.893  -0.516 -0.164 C5   GYV 7  
GYV C6   C9   C 0 1 N N N N N N 25.882 32.534 43.444 3.260  -0.756 -0.806 C6   GYV 8  
GYV O6   O9   O 0 1 N N N N N N 26.832 32.411 42.396 3.943  0.491  -0.954 O6   GYV 9  
GYV C4   C7   C 0 1 N N S N N N 23.415 32.756 43.310 1.213  -1.860 0.107  C4   GYV 10 
GYV O4   O7   O 0 1 N N N N N N 23.228 33.708 42.291 1.995  -2.612 1.038  O4   GYV 11 
GYV C3   C6   C 0 1 N N R N N N 22.210 31.917 43.252 -0.180 -1.610 0.694  C3   GYV 12 
GYV O3   O6   O 0 1 N N N N N N 21.138 32.825 43.293 -0.851 -2.857 0.882  O3   GYV 13 
GYV C2   C5   C 0 1 N N R N N N 22.357 31.096 44.491 -0.982 -0.738 -0.277 C2   GYV 14 
GYV N2   N5   N 0 1 N N N N N N 21.056 30.535 44.746 -2.290 -0.430 0.308  N5   GYV 15 
GYV C10  C10  C 0 1 N N N N N N 20.453 30.678 45.908 -3.331 -0.128 -0.493 C10  GYV 16 
GYV O10  O10  O 0 1 N N N N N N 20.939 31.278 46.802 -3.186 -0.111 -1.697 O10  GYV 17 
GYV C11  C11  C 0 1 N N N N N N 19.126 30.052 46.071 -4.676 0.189  0.108  C11  GYV 18 
GYV HD31 HD31 H 0 0 N N N N N N 22.212 26.103 42.597 0.867  4.206  1.687  HD31 GYV 19 
GYV HD32 HD32 H 0 0 N N N N N N 22.000 27.387 41.420 0.300  2.922  2.610  HD32 GYV 20 
GYV H1   H15  H 0 1 N N N N N N 23.435 29.334 45.038 -0.763 1.169  -1.257 H1   GYV 21 
GYV H2   H5   H 0 1 N N N N N N 22.718 31.669 45.358 -1.119 -1.271 -1.217 H2   GYV 22 
GYV H5   H8   H 0 1 N N N N N N 24.555 31.597 41.988 2.022  0.023  0.775  H5   GYV 23 
GYV H61  H91C H 0 1 N N N N N N 25.674 33.599 43.623 3.848  -1.419 -0.171 H61  GYV 24 
GYV H62  H92C H 0 1 N N N N N N 26.289 32.074 44.356 3.126  -1.215 -1.786 H62  GYV 25 
GYV H4   H7   H 0 1 N N N N N N 23.597 33.274 44.263 1.121  -2.417 -0.825 H4   GYV 26 
GYV HO6  H9   H 0 1 N Y N N N N 26.381 32.384 41.560 4.819  0.414  -1.355 HO6  GYV 27 
GYV HO4  HA   H 0 1 N Y N N N N 23.186 34.577 42.673 2.892  -2.803 0.733  HO4  GYV 28 
GYV H3   H6   H 0 1 N N N N N N 22.058 31.267 42.377 -0.085 -1.098 1.652  H3   GYV 29 
GYV HO3  HB   H 0 1 N Y N N N N 20.930 33.030 44.197 -0.394 -3.463 1.482  HO3  GYV 30 
GYV HN2  HC   H 0 1 N N N N N N 20.597 30.022 44.020 -2.406 -0.444 1.270  HC   GYV 31 
GYV H111 H111 H 0 0 N N N N N N 18.922 29.896 47.141 -4.587 1.056  0.763  H111 GYV 32 
GYV H112 H112 H 0 0 N N N N N N 18.355 30.710 45.643 -5.388 0.407  -0.688 H112 GYV 33 
GYV H113 H113 H 0 0 N N N N N N 19.112 29.083 45.550 -5.027 -0.667 0.685  H113 GYV 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GYV ND3 C1A  SING N N 1  
GYV C1A O1A  DOUB N N 2  
GYV C1A O1   SING N N 3  
GYV O1  C1   SING N N 4  
GYV C1  O5   SING N N 5  
GYV C1  C2   SING N N 6  
GYV O5  C5   SING N N 7  
GYV C5  C6   SING N N 8  
GYV C5  C4   SING N N 9  
GYV C6  O6   SING N N 10 
GYV C4  O4   SING N N 11 
GYV C4  C3   SING N N 12 
GYV C3  O3   SING N N 13 
GYV C3  C2   SING N N 14 
GYV C2  N2   SING N N 15 
GYV N2  C10  SING N N 16 
GYV C10 O10  DOUB N N 17 
GYV C10 C11  SING N N 18 
GYV ND3 HD31 SING N N 19 
GYV ND3 HD32 SING N N 20 
GYV C1  H1   SING N N 21 
GYV C2  H2   SING N N 22 
GYV C5  H5   SING N N 23 
GYV C6  H61  SING N N 24 
GYV C6  H62  SING N N 25 
GYV C4  H4   SING N N 26 
GYV O6  HO6  SING N N 27 
GYV O4  HO4  SING N N 28 
GYV C3  H3   SING N N 29 
GYV O3  HO3  SING N N 30 
GYV N2  HN2  SING N N 31 
GYV C11 H111 SING N N 32 
GYV C11 H112 SING N N 33 
GYV C11 H113 SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GYV SMILES           ACDLabs              10.04 "O=C(OC1OC(C(O)C(O)C1NC(=O)C)CO)N"                                                                                                    
GYV SMILES_CANONICAL CACTVS               3.352 "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1OC(N)=O"                                                                            
GYV SMILES           CACTVS               3.352 "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1OC(N)=O"                                                                                     
GYV SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1OC(=O)N)CO)O)O"                                                                             
GYV SMILES           "OpenEye OEToolkits" 1.6.1 "CC(=O)NC1C(C(C(OC1OC(=O)N)CO)O)O"                                                                                                    
GYV InChI            InChI                1.03  "InChI=1S/C9H16N2O7/c1-3(13)11-5-7(15)6(14)4(2-12)17-8(5)18-9(10)16/h4-8,12,14-15H,2H2,1H3,(H2,10,16)(H,11,13)/t4-,5-,6-,7-,8-/m1/s1" 
GYV InChIKey         InChI                1.03  BMFDLZBABRHLIB-FMDGEEDCSA-N                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GYV "SYSTEMATIC NAME"           ACDLabs              10.04 "2-(acetylamino)-1-O-carbamoyl-2-deoxy-alpha-D-glucopyranose"                       
GYV "SYSTEMATIC NAME"           "OpenEye OEToolkits" 1.6.1 "[(2R,3R,4R,5S,6R)-3-acetamido-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl] carbamate" 
GYV "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE             1.0   methyl-a-D-glucopyranoside                                                          
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
GYV "CARBOHYDRATE ISOMER"                 D        PDB ? 
GYV "CARBOHYDRATE RING"                   pyranose PDB ? 
GYV "CARBOHYDRATE ANOMER"                 alpha    PDB ? 
GYV "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GYV "Create component"         2010-01-26 EBI  
GYV "Modify descriptor"        2011-06-04 RCSB 
GYV "Other modification"       2020-07-03 RCSB 
GYV "Modify name"              2020-07-17 RCSB 
GYV "Modify synonyms"          2020-07-17 RCSB 
GYV "Modify linking type"      2020-07-17 RCSB 
GYV "Modify atom id"           2020-07-17 RCSB 
GYV "Modify component atom id" 2020-07-17 RCSB 
GYV "Modify leaving atom flag" 2020-07-17 RCSB 
GYV "Modify name"              2020-07-18 RCSB 
GYV "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            GYV 
_pdbx_chem_comp_pcm.modified_residue_id                DBB 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Carbohydrate 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ND3 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   CG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
#