data_GZF # _chem_comp.id GZF _chem_comp.name "[(2R,3R,4S,5S)-5-(2-azanyl-6-oxidanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl bis(oxidanyl)phosphinothioyl hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H15 N5 O10 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-10-12 _chem_comp.pdbx_modified_date 2021-03-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 459.266 _chem_comp.one_letter_code ? _chem_comp.three_letter_code GZF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7D8Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal GZF O01 O1 O 0 1 N N N -34.073 -2.077 21.701 -0.803 -3.474 -0.188 O01 GZF 1 GZF C02 C1 C 0 1 N N R -33.869 -3.438 21.303 -1.053 -2.748 1.018 C02 GZF 2 GZF C03 C2 C 0 1 N N R -32.626 -4.017 21.664 -0.114 -1.528 1.128 C03 GZF 3 GZF C04 C3 C 0 1 N N N -31.920 -3.936 23.076 1.132 -1.751 0.269 C04 GZF 4 GZF O05 O2 O 0 1 N N N -32.515 -4.722 24.116 2.047 -0.672 0.467 O05 GZF 5 GZF P06 P1 P 0 1 N N N -32.182 -4.101 25.532 3.469 -0.580 -0.282 P06 GZF 6 GZF O07 O3 O 0 1 N N N -33.146 -4.567 26.574 3.232 -0.413 -1.865 O07 GZF 7 GZF O08 O4 O 0 1 N N N -32.096 -2.566 25.524 4.242 -1.816 -0.026 O08 GZF 8 GZF O09 O5 O 0 1 N N N -30.685 -4.673 25.793 4.287 0.690 0.275 O09 GZF 9 GZF P10 P2 P 0 1 N N N -29.787 -5.049 27.065 5.826 1.156 0.185 P10 GZF 10 GZF O11 O6 O 0 1 N N N -28.436 -5.354 26.302 6.010 2.552 0.967 O11 GZF 11 GZF O12 O7 O 0 1 N N N -29.792 -3.881 28.103 6.766 0.036 0.859 O12 GZF 12 GZF S13 S1 S 0 1 N N N -30.549 -6.708 27.863 6.305 1.377 -1.602 S13 GZF 13 GZF O14 O8 O 0 1 N N N -32.934 -5.585 21.617 -0.834 -0.384 0.653 O14 GZF 14 GZF C15 C4 C 0 1 N N S -34.108 -5.605 22.252 -2.142 -0.777 0.209 C15 GZF 15 GZF N16 N1 N 0 1 Y N N -34.510 -6.998 22.571 -3.124 0.259 0.541 N16 GZF 16 GZF C17 C5 C 0 1 Y N N -33.686 -7.601 23.463 -3.009 1.194 1.528 C17 GZF 17 GZF N18 N2 N 0 1 Y N N -34.092 -8.809 23.763 -4.063 1.956 1.543 N18 GZF 18 GZF C19 C6 C 0 1 Y N N -35.256 -9.010 23.071 -4.921 1.560 0.570 C19 GZF 19 GZF C20 C7 C 0 1 Y N N -36.090 -10.152 23.036 -6.180 1.996 0.129 C20 GZF 20 GZF O21 O9 O 0 1 N N N -35.827 -11.135 23.693 -6.795 3.046 0.725 O21 GZF 21 GZF N22 N3 N 0 1 Y N N -37.165 -10.064 22.252 -6.754 1.360 -0.883 N22 GZF 22 GZF C23 C8 C 0 1 Y N N -37.458 -8.957 21.523 -6.159 0.331 -1.474 C23 GZF 23 GZF N24 N4 N 0 1 N N N -38.651 -8.974 20.702 -6.804 -0.303 -2.523 N24 GZF 24 GZF N25 N5 N 0 1 Y N N -36.691 -7.856 21.531 -4.973 -0.114 -1.090 N25 GZF 25 GZF C26 C9 C 0 1 Y N N -35.557 -7.864 22.320 -4.325 0.470 -0.088 C26 GZF 26 GZF C27 C10 C 0 1 N N S -35.003 -4.444 21.684 -2.456 -2.083 0.981 C27 GZF 27 GZF O28 O10 O 0 1 N N N -35.860 -4.086 22.754 -3.391 -2.892 0.265 O28 GZF 28 GZF H1 H1 H 0 1 N N N -34.930 -1.787 21.412 -1.368 -4.250 -0.303 H1 GZF 29 GZF H2 H2 H 0 1 N N N -33.880 -3.426 20.203 -0.953 -3.395 1.889 H2 GZF 30 GZF H3 H3 H 0 1 N N N -31.871 -3.801 20.894 0.176 -1.377 2.168 H3 GZF 31 GZF H4 H4 H 0 1 N N N -30.879 -4.271 22.953 1.607 -2.689 0.557 H4 GZF 32 GZF H5 H5 H 0 1 N N N -31.931 -2.885 23.399 0.845 -1.796 -0.782 H5 GZF 33 GZF H6 H6 H 0 1 N N N -33.514 -3.816 27.024 2.731 0.378 -2.107 H6 GZF 34 GZF H7 H7 H 0 1 N N N -30.160 -4.187 28.923 6.573 -0.132 1.791 H7 GZF 35 GZF H9 H9 H 0 1 N N N -33.858 -5.211 23.248 -2.137 -0.962 -0.865 H9 GZF 36 GZF H10 H10 H 0 1 N N N -32.801 -7.140 23.876 -2.167 1.288 2.197 H10 GZF 37 GZF H12 H12 H 0 1 N N N -38.740 -8.100 20.224 -6.385 -1.059 -2.964 H12 GZF 38 GZF H13 H13 H 0 1 N N N -38.585 -9.715 20.033 -7.674 0.009 -2.817 H13 GZF 39 GZF H14 H14 H 0 1 N N N -35.548 -4.776 20.788 -2.815 -1.867 1.987 H14 GZF 40 GZF H15 H15 H 0 1 N N N -36.503 -4.772 22.889 -3.536 -3.765 0.656 H15 GZF 41 GZF H8 H8 H 0 1 N N N -28.237 -6.281 26.367 6.915 2.893 0.954 H8 GZF 42 GZF H16 H16 H 0 1 N N N -36.494 -11.797 23.554 -6.584 3.902 0.329 H16 GZF 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GZF N24 C23 SING N N 1 GZF C02 C03 SING N N 2 GZF C02 C27 SING N N 3 GZF C02 O01 SING N N 4 GZF C23 N25 DOUB Y N 5 GZF C23 N22 SING Y N 6 GZF N25 C26 SING Y N 7 GZF O14 C03 SING N N 8 GZF O14 C15 SING N N 9 GZF C03 C04 SING N N 10 GZF C27 C15 SING N N 11 GZF C27 O28 SING N N 12 GZF C15 N16 SING N N 13 GZF N22 C20 DOUB Y N 14 GZF C26 N16 SING Y N 15 GZF C26 C19 DOUB Y N 16 GZF N16 C17 SING Y N 17 GZF C20 C19 SING Y N 18 GZF C20 O21 SING N N 19 GZF C19 N18 SING Y N 20 GZF C04 O05 SING N N 21 GZF C17 N18 DOUB Y N 22 GZF O05 P06 SING N N 23 GZF O08 P06 DOUB N N 24 GZF P06 O09 SING N N 25 GZF P06 O07 SING N N 26 GZF O09 P10 SING N N 27 GZF O11 P10 SING N N 28 GZF P10 S13 DOUB N N 29 GZF P10 O12 SING N N 30 GZF O01 H1 SING N N 31 GZF C02 H2 SING N N 32 GZF C03 H3 SING N N 33 GZF C04 H4 SING N N 34 GZF C04 H5 SING N N 35 GZF O07 H6 SING N N 36 GZF O12 H7 SING N N 37 GZF C15 H9 SING N N 38 GZF C17 H10 SING N N 39 GZF N24 H12 SING N N 40 GZF N24 H13 SING N N 41 GZF C27 H14 SING N N 42 GZF O28 H15 SING N N 43 GZF O11 H8 SING N N 44 GZF O21 H16 SING N N 45 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor GZF InChI InChI 1.03 "InChI=1S/C10H15N5O10P2S/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(24-9)1-23-26(19,20)25-27(21,22)28/h2-3,5-6,9,16-17H,1H2,(H,19,20)(H2,21,22,28)(H3,11,13,14,18)/t3-,5+,6+,9+/m1/s1" GZF InChIKey InChI 1.03 QJXJXBXFIOTYHB-KHLHZJAASA-N GZF SMILES_CANONICAL CACTVS 3.385 "Nc1nc(O)c2ncn([C@H]3O[C@H](CO[P](O)(=O)O[P](O)(O)=S)[C@H](O)[C@@H]3O)c2n1" GZF SMILES CACTVS 3.385 "Nc1nc(O)c2ncn([CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=S)[CH](O)[CH]3O)c2n1" GZF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1[C@@H]3[C@H]([C@H]([C@H](O3)COP(=O)(O)OP(=S)(O)O)O)O)nc(nc2O)N" GZF SMILES "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=S)(O)O)O)O)nc(nc2O)N" # _pdbx_chem_comp_identifier.comp_id GZF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{R},4~{S},5~{S})-5-(2-azanyl-6-oxidanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl bis(oxidanyl)phosphinothioyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site GZF "Create component" 2020-10-12 PDBJ GZF "Initial release" 2021-03-17 RCSB ##