data_H3F
#
_chem_comp.id H3F
_chem_comp.name Tafenoquine
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAD
_chem_comp.formula "C24 H28 F3 N3 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "(4S)-N4-[2,6-dimethoxy-4-methyl-5-[3-(trifluoromethyl)phenoxy]quinolin-8-yl]pentane-1,4-diamine"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-10-30
_chem_comp.pdbx_modified_date 2021-11-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 463.493
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code H3F
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7DDC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H3F C01 C1 C 0 1 N N N 4.513 -0.924 20.438 1.607 -2.442 1.062 C01 H3F 1
H3F C02 C2 C 0 1 Y N N 5.714 -1.038 21.318 0.194 -2.288 0.562 C02 H3F 2
H3F C03 C3 C 0 1 Y N N 6.684 -2.030 20.927 -0.567 -3.381 0.270 C03 H3F 3
H3F C04 C4 C 0 1 Y N N 7.894 -2.265 21.690 -1.878 -3.214 -0.194 C04 H3F 4
H3F N05 N1 N 0 1 Y N N 8.127 -1.515 22.821 -2.403 -2.020 -0.359 N05 H3F 5
H3F C06 C5 C 0 1 Y N N 7.140 -0.487 23.266 -1.705 -0.910 -0.089 C06 H3F 6
H3F C07 C6 C 0 1 Y N N 5.882 -0.179 22.546 -0.376 -1.012 0.389 C07 H3F 7
H3F C08 C7 C 0 1 Y N N 4.904 0.919 23.149 0.353 0.156 0.677 C08 H3F 8
H3F C09 C8 C 0 1 Y N N 5.314 1.590 24.321 -0.236 1.392 0.496 C09 H3F 9
H3F C10 C9 C 0 1 Y N N 6.583 1.235 24.970 -1.547 1.493 0.031 C10 H3F 10
H3F C11 C10 C 0 1 Y N N 7.490 0.256 24.511 -2.278 0.366 -0.270 C11 H3F 11
H3F N12 N2 N 0 1 N N N 8.680 -0.045 25.212 -3.591 0.485 -0.736 N12 H3F 12
H3F C13 C11 C 0 1 N N S 8.985 -1.275 26.020 -4.184 1.811 -0.923 C13 H3F 13
H3F C14 C12 C 0 1 N N N 9.299 -0.869 27.441 -3.802 2.351 -2.302 C14 H3F 14
H3F C15 C13 C 0 1 N N N 7.771 -2.433 26.032 -5.707 1.708 -0.820 C15 H3F 15
H3F C16 C14 C 0 1 N N N 7.953 -3.833 26.792 -6.096 1.288 0.599 C16 H3F 16
H3F C17 C15 C 0 1 N N N 9.389 -4.462 26.787 -7.619 1.184 0.701 C17 H3F 17
H3F N18 N3 N 0 1 N N N 9.600 -5.401 25.654 -7.991 0.781 2.064 N18 H3F 18
H3F O19 O1 O 0 1 N N N 4.456 2.649 24.882 0.469 2.522 0.774 O19 H3F 19
H3F C20 C16 C 0 1 N N N 3.103 2.382 25.372 -0.196 3.770 0.567 C20 H3F 20
H3F O21 O2 O 0 1 N N N 3.655 1.477 22.592 1.632 0.069 1.131 O21 H3F 21
H3F C22 C17 C 0 1 Y N N 2.401 0.999 22.253 2.640 0.243 0.237 C22 H3F 22
H3F C23 C18 C 0 1 Y N N 1.346 1.918 22.026 2.351 0.503 -1.095 C23 H3F 23
H3F C24 C19 C 0 1 Y N N 0.056 1.498 21.666 3.377 0.680 -2.002 C24 H3F 24
H3F C25 C20 C 0 1 Y N N -0.196 0.155 21.505 4.693 0.600 -1.583 C25 H3F 25
H3F C26 C21 C 0 1 Y N N 0.873 -0.731 21.729 4.984 0.342 -0.256 C26 H3F 26
H3F C27 C22 C 0 1 Y N N 2.153 -0.339 22.092 3.961 0.169 0.656 C27 H3F 27
H3F C28 C23 C 0 1 N N N 0.625 -2.236 21.555 6.419 0.254 0.196 C28 H3F 28
H3F F29 F1 F 0 1 N N N 0.268 -2.829 22.722 7.266 0.468 -0.896 F29 H3F 29
H3F F30 F2 F 0 1 N N N 1.673 -2.843 21.063 6.661 1.228 1.171 F30 H3F 30
H3F F31 F3 F 0 1 N N N -0.395 -2.488 20.722 6.662 -1.015 0.734 F31 H3F 31
H3F O32 O3 O 0 1 N N N 8.920 -3.322 21.225 -2.623 -4.311 -0.480 O32 H3F 32
H3F C33 C24 C 0 1 N N N 8.687 -4.714 21.337 -3.954 -4.086 -0.950 C33 H3F 33
H3F H1 H1 H 0 1 N N N 3.729 -1.608 20.796 1.618 -2.363 2.149 H1 H3F 34
H3F H2 H2 H 0 1 N N N 4.137 0.109 20.463 1.994 -3.417 0.764 H2 H3F 35
H3F H3 H3 H 0 1 N N N 4.788 -1.189 19.406 2.231 -1.657 0.634 H3 H3F 36
H3F H4 H4 H 0 1 N N N 6.504 -2.616 20.038 -0.160 -4.373 0.395 H4 H3F 37
H3F H5 H5 H 0 1 N N N 6.843 1.767 25.873 -1.991 2.468 -0.103 H5 H3F 38
H3F H6 H6 H 0 1 N N N 9.399 -0.012 24.518 -4.109 -0.310 -0.935 H6 H3F 39
H3F H7 H7 H 0 1 N N N 9.875 -1.760 25.593 -3.813 2.487 -0.152 H7 H3F 40
H3F H8 H8 H 0 1 N N N 9.523 -1.765 28.038 -4.243 3.338 -2.441 H8 H3F 41
H3F H9 H9 H 0 1 N N N 10.170 -0.198 27.446 -2.717 2.425 -2.375 H9 H3F 42
H3F H10 H10 H 0 1 N N N 8.432 -0.348 27.873 -4.173 1.675 -3.073 H10 H3F 43
H3F H11 H11 H 0 1 N N N 6.888 -1.951 26.477 -6.153 2.677 -1.047 H11 H3F 44
H3F H12 H12 H 0 1 N N N 7.565 -2.676 24.979 -6.070 0.966 -1.531 H12 H3F 45
H3F H13 H13 H 0 1 N N N 7.660 -3.682 27.841 -5.650 0.319 0.825 H13 H3F 46
H3F H14 H14 H 0 1 N N N 7.271 -4.557 26.322 -5.733 2.030 1.310 H14 H3F 47
H3F H15 H15 H 0 1 N N N 9.537 -5.009 27.730 -8.065 2.153 0.475 H15 H3F 48
H3F H16 H16 H 0 1 N N N 10.128 -3.651 26.714 -7.981 0.442 -0.010 H16 H3F 49
H3F H17 H17 H 0 1 N N N 10.527 -5.773 25.697 -7.611 1.419 2.747 H17 H3F 50
H3F H18 H18 H 0 1 N N N 8.938 -6.148 25.713 -8.993 0.705 2.157 H18 H3F 51
H3F H20 H20 H 0 1 N N N 2.656 3.316 25.742 -1.085 3.817 1.196 H20 H3F 52
H3F H21 H21 H 0 1 N N N 2.489 1.981 24.552 0.477 4.587 0.826 H21 H3F 53
H3F H22 H22 H 0 1 N N N 3.148 1.648 26.190 -0.487 3.856 -0.480 H22 H3F 54
H3F H23 H23 H 0 1 N N N 1.541 2.975 22.133 1.323 0.565 -1.423 H23 H3F 55
H3F H24 H24 H 0 1 N N N -0.731 2.222 21.517 3.153 0.882 -3.039 H24 H3F 56
H3F H25 H25 H 0 1 N N N -1.174 -0.204 21.219 5.494 0.740 -2.294 H25 H3F 57
H3F H26 H26 H 0 1 N N N 2.934 -1.069 22.244 4.189 -0.033 1.692 H26 H3F 58
H3F H27 H27 H 0 1 N N N 9.554 -5.264 20.943 -3.921 -3.506 -1.872 H27 H3F 59
H3F H28 H28 H 0 1 N N N 8.536 -4.976 22.395 -4.438 -5.044 -1.140 H28 H3F 60
H3F H29 H29 H 0 1 N N N 7.789 -4.983 20.761 -4.518 -3.537 -0.195 H29 H3F 61
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H3F C01 C02 SING N N 1
H3F F31 C28 SING N N 2
H3F C03 C02 DOUB Y N 3
H3F C03 C04 SING Y N 4
H3F F30 C28 SING N N 5
H3F O32 C33 SING N N 6
H3F O32 C04 SING N N 7
H3F C02 C07 SING Y N 8
H3F C25 C24 DOUB Y N 9
H3F C25 C26 SING Y N 10
H3F C28 C26 SING N N 11
H3F C28 F29 SING N N 12
H3F C24 C23 SING Y N 13
H3F C04 N05 DOUB Y N 14
H3F C26 C27 DOUB Y N 15
H3F C23 C22 DOUB Y N 16
H3F C27 C22 SING Y N 17
H3F C22 O21 SING N N 18
H3F C07 C08 DOUB Y N 19
H3F C07 C06 SING Y N 20
H3F O21 C08 SING N N 21
H3F N05 C06 SING Y N 22
H3F C08 C09 SING Y N 23
H3F C06 C11 DOUB Y N 24
H3F C09 O19 SING N N 25
H3F C09 C10 DOUB Y N 26
H3F C11 C10 SING Y N 27
H3F C11 N12 SING N N 28
H3F O19 C20 SING N N 29
H3F N12 C13 SING N N 30
H3F N18 C17 SING N N 31
H3F C13 C15 SING N N 32
H3F C13 C14 SING N N 33
H3F C15 C16 SING N N 34
H3F C17 C16 SING N N 35
H3F C01 H1 SING N N 36
H3F C01 H2 SING N N 37
H3F C01 H3 SING N N 38
H3F C03 H4 SING N N 39
H3F C10 H5 SING N N 40
H3F N12 H6 SING N N 41
H3F C13 H7 SING N N 42
H3F C14 H8 SING N N 43
H3F C14 H9 SING N N 44
H3F C14 H10 SING N N 45
H3F C15 H11 SING N N 46
H3F C15 H12 SING N N 47
H3F C16 H13 SING N N 48
H3F C16 H14 SING N N 49
H3F C17 H15 SING N N 50
H3F C17 H16 SING N N 51
H3F N18 H17 SING N N 52
H3F N18 H18 SING N N 53
H3F C20 H20 SING N N 54
H3F C20 H21 SING N N 55
H3F C20 H22 SING N N 56
H3F C23 H23 SING N N 57
H3F C24 H24 SING N N 58
H3F C25 H25 SING N N 59
H3F C27 H26 SING N N 60
H3F C33 H27 SING N N 61
H3F C33 H28 SING N N 62
H3F C33 H29 SING N N 63
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H3F InChI InChI 1.03 "InChI=1S/C24H28F3N3O3/c1-14-11-20(32-4)30-22-18(29-15(2)7-6-10-28)13-19(31-3)23(21(14)22)33-17-9-5-8-16(12-17)24(25,26)27/h5,8-9,11-13,15,29H,6-7,10,28H2,1-4H3/t15-/m0/s1"
H3F InChIKey InChI 1.03 LBHLFPGPEGDCJG-HNNXBMFYSA-N
H3F SMILES_CANONICAL CACTVS 3.385 "COc1cc(C)c2c(Oc3cccc(c3)C(F)(F)F)c(OC)cc(N[C@@H](C)CCCN)c2n1"
H3F SMILES CACTVS 3.385 "COc1cc(C)c2c(Oc3cccc(c3)C(F)(F)F)c(OC)cc(N[CH](C)CCCN)c2n1"
H3F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc2c1c(c(cc2N[C@@H](C)CCCN)OC)Oc3cccc(c3)C(F)(F)F)OC"
H3F SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc2c1c(c(cc2NC(C)CCCN)OC)Oc3cccc(c3)C(F)(F)F)OC"
#
_pdbx_chem_comp_identifier.comp_id H3F
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(4~{S})-~{N}4-[2,6-dimethoxy-4-methyl-5-[3-(trifluoromethyl)phenoxy]quinolin-8-yl]pentane-1,4-diamine"
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id H3F
_pdbx_chem_comp_synonyms.name "(4S)-N4-[2,6-dimethoxy-4-methyl-5-[3-(trifluoromethyl)phenoxy]quinolin-8-yl]pentane-1,4-diamine"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H3F "Create component" 2020-10-30 PDBJ
H3F "Modify synonyms" 2021-03-13 RCSB
H3F "Initial release" 2021-11-10 RCSB
##