data_H4M
#
_chem_comp.id H4M
_chem_comp.name "5,10-DIMETHYLENE TETRAHYDROMETHANOPTERIN"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H45 N6 O16 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-12-16
_chem_comp.pdbx_modified_date 2015-04-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 788.693
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code H4M
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3IQE
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H4M N1 N1 N 0 1 N N N -3.377 -26.311 16.374 -12.604 -1.827 -0.031 N1 H4M 1
H4M C2 C2 C 0 1 N N N -4.484 -25.698 15.946 -13.019 -1.535 1.183 C2 H4M 2
H4M NA2 NA2 N 0 1 N N N -5.284 -25.013 16.810 -14.225 -2.029 1.612 NA2 H4M 3
H4M N3 N3 N 0 1 N N N -4.812 -25.749 14.645 -12.285 -0.758 2.026 N3 H4M 4
H4M C4 C4 C 0 1 N N N -4.045 -26.410 13.740 -11.090 -0.266 1.625 C4 H4M 5
H4M OH4 OH4 O 0 1 N N N -4.426 -26.422 12.553 -10.418 0.430 2.370 OH4 H4M 6
H4M C4A C4A C 0 1 N N N -2.916 -27.071 14.178 -10.645 -0.574 0.341 C4A H4M 7
H4M N5 N5 N 0 1 N N N -2.061 -27.791 13.355 -9.415 -0.131 -0.171 N5 H4M 8
H4M C6 C6 C 0 1 N N R -1.380 -28.915 13.981 -9.142 -0.107 -1.630 C6 H4M 9
H4M C7 C7 C 0 1 N N S -0.578 -28.338 15.152 -9.604 -1.464 -2.171 C7 H4M 10
H4M C7M C7M C 0 1 N N N 0.181 -29.401 15.935 -9.494 -1.476 -3.697 C7M H4M 11
H4M N8 N8 N 0 1 N N N -1.486 -27.613 16.025 -11.007 -1.664 -1.773 N8 H4M 12
H4M C8A C8A C 0 1 N N N -2.597 -27.019 15.536 -11.435 -1.367 -0.491 C8A H4M 13
H4M C9 C9 C 0 1 N N R -0.579 -29.531 12.817 -7.615 0.048 -1.733 C9 H4M 14
H4M C9M C9M C 0 1 N N N -0.322 -31.016 13.040 -7.231 0.811 -3.002 C9M H4M 15
H4M C10 C10 C 0 1 N N N -2.346 -28.240 12.010 -8.195 0.279 0.520 C10 H4M 16
H4M N10 N10 N 0 1 N N N -1.418 -29.291 11.634 -7.293 0.848 -0.515 N10 H4M 17
H4M C11 C11 C 0 1 Y N N -0.351 -30.096 7.632 -3.299 0.380 0.564 C11 H4M 18
H4M C12 C12 C 0 1 Y N N 0.513 -30.465 8.650 -4.154 1.102 1.378 C12 H4M 19
H4M C13 C13 C 0 1 Y N N 0.172 -30.203 9.994 -5.479 1.259 1.023 C13 H4M 20
H4M C14 C14 C 0 1 Y N N -1.024 -29.560 10.301 -5.954 0.692 -0.153 C14 H4M 21
H4M C15 C15 C 0 1 Y N N -1.879 -29.210 9.267 -5.093 -0.032 -0.968 C15 H4M 22
H4M C16 C16 C 0 1 Y N N -1.547 -29.471 7.940 -3.768 -0.186 -0.607 C16 H4M 23
H4M CX1 CX1 C 0 1 N N N -0.042 -30.396 6.180 -1.852 0.216 0.952 CX1 H4M 24
H4M CX2 CX2 C 0 1 N N S 1.192 -29.704 5.661 -1.034 1.369 0.368 CX2 H4M 25
H4M CX3 CX3 C 0 1 N N S 1.463 -30.182 4.260 0.410 1.271 0.863 CX3 H4M 26
H4M CX4 CX4 C 0 1 N N R 2.595 -29.257 3.940 1.229 2.424 0.279 CX4 H4M 27
H4M CX5 CX5 C 0 1 N N N 3.939 -29.726 3.431 2.674 2.326 0.775 CX5 H4M 28
H4M OX2 OX2 O 0 1 N N N 1.015 -28.286 5.545 -1.054 1.292 -1.059 OX2 H4M 29
H4M OX3 OX3 O 0 1 N N N 1.797 -31.564 4.293 0.431 1.348 2.290 OX3 H4M 30
H4M OX4 OX4 O 0 1 N N N 2.254 -27.850 3.952 1.209 2.347 -1.148 OX4 H4M 31
H4M OX5 OX5 O 0 1 N N N 4.997 -28.909 3.912 3.410 3.465 0.324 OX5 H4M 32
H4M O5J O5J O 0 1 N N N 9.848 -29.605 2.600 7.850 0.761 -0.162 O5J H4M 33
H4M C5J C5J C 0 1 N N N 8.951 -28.817 1.827 7.876 2.066 0.421 C5J H4M 34
H4M C4J C4J C 0 1 N N R 7.700 -28.453 2.627 6.838 2.953 -0.269 C4J H4M 35
H4M O4J O4J O 0 1 N N N 6.779 -29.545 2.631 5.520 2.473 0.018 O4J H4M 36
H4M C3J C3J C 0 1 N N S 7.939 -28.089 4.089 6.938 4.395 0.274 C3J H4M 37
H4M O3J O3J O 0 1 N N N 7.251 -26.877 4.409 7.654 5.233 -0.635 O3J H4M 38
H4M C2J C2J C 0 1 N N R 7.267 -29.187 4.892 5.446 4.819 0.359 C2J H4M 39
H4M O2J O2J O 0 1 N N N 6.744 -28.726 6.159 4.973 5.293 -0.903 O2J H4M 40
H4M C1J C1J C 0 1 N N S 6.196 -29.688 3.915 4.778 3.472 0.735 C1J H4M 41
H4M PA PA P 0 1 N N N 10.971 -30.526 1.893 8.814 -0.434 0.322 PA H4M 42
H4M O1A O1A O 0 1 N N N 12.280 -29.789 2.102 10.224 0.010 0.252 O1A H4M 43
H4M O2A O2A O 0 1 N N N 10.825 -31.818 2.682 8.452 -0.836 1.838 O2A H4M 44
H4M O3A O3A O 0 1 N N N 10.558 -30.595 0.434 8.606 -1.712 -0.636 O3A H4M 45
H4M H1 H1 H 0 1 N N N -5.046 -24.964 17.780 -14.758 -2.585 1.023 H1 H4M 46
H4M H2 H2 H 0 1 N N N -6.109 -24.559 16.474 -14.543 -1.823 2.505 H2 H4M 47
H4M H3 H3 H 0 1 N N N -5.643 -25.288 14.334 -12.620 -0.555 2.913 H3 H4M 48
H4M H6 H6 H 0 1 N N N -2.107 -29.650 14.357 -9.669 0.713 -2.119 H6 H4M 49
H4M H7 H7 H 0 1 N N N 0.158 -27.631 14.740 -8.986 -2.258 -1.751 H7 H4M 50
H4M H8 H8 H 0 1 N N N 0.734 -28.926 16.758 -8.457 -1.306 -3.988 H8 H4M 51
H4M H9 H9 H 0 1 N N N -0.531 -30.132 16.346 -9.823 -2.443 -4.078 H9 H4M 52
H4M H10 H10 H 0 1 N N N 0.888 -29.914 15.266 -10.122 -0.689 -4.113 H10 H4M 53
H4M H11 H11 H 0 1 N N N 0.381 -29.003 12.717 -7.124 -0.924 -1.703 H11 H4M 54
H4M H12 H12 H 0 1 N N N 0.307 -31.150 13.932 -7.684 1.802 -2.982 H12 H4M 55
H4M H13 H13 H 0 1 N N N -1.280 -31.536 13.186 -6.146 0.908 -3.053 H13 H4M 56
H4M H14 H14 H 0 1 N N N 0.192 -31.435 12.162 -7.588 0.266 -3.876 H14 H4M 57
H4M H15 H15 H 0 1 N N N -2.242 -27.395 11.313 -8.426 1.034 1.271 H15 H4M 58
H4M H16 H16 H 0 1 N N N -3.374 -28.628 11.965 -7.725 -0.585 0.992 H16 H4M 59
H4M H17 H17 H 0 1 N N N 1.447 -30.953 8.415 -3.785 1.542 2.292 H17 H4M 60
H4M H18 H18 H 0 1 N N N 0.841 -30.502 10.787 -6.146 1.822 1.658 H18 H4M 61
H4M H19 H19 H 0 1 N N N -2.818 -28.727 9.495 -5.458 -0.475 -1.883 H19 H4M 62
H4M H20 H20 H 0 1 N N N -2.225 -29.185 7.149 -3.098 -0.748 -1.240 H20 H4M 63
H4M H21 H21 H 0 1 N N N -0.900 -30.076 5.570 -1.765 0.222 2.039 H21 H4M 64
H4M H22 H22 H 0 1 N N N 0.099 -31.482 6.073 -1.477 -0.730 0.563 H22 H4M 65
H4M H23 H23 H 0 1 N N N 2.050 -29.939 6.308 -1.464 2.318 0.687 H23 H4M 66
H4M H24 H24 H 0 1 N N N 0.600 -29.983 3.608 0.841 0.322 0.545 H24 H4M 67
H4M H25 H25 H 0 1 N N N 2.941 -29.236 4.984 0.799 3.373 0.598 H25 H4M 68
H4M H26 H26 H 0 1 N N N 3.935 -29.693 2.331 2.682 2.296 1.864 H26 H4M 69
H4M H27 H27 H 0 1 N N N 4.106 -30.760 3.767 3.132 1.419 0.382 H27 H4M 70
H4M H28 H28 H 0 1 N N N 0.839 -27.917 6.403 -0.685 0.471 -1.414 H28 H4M 71
H4M H29 H29 H 0 1 N N N 1.022 -32.073 4.502 0.062 2.168 2.645 H29 H4M 72
H4M H30 H30 H 0 1 N N N 1.378 -27.739 4.302 1.578 1.526 -1.503 H30 H4M 73
H4M H31 H31 H 0 1 N N N 9.461 -27.892 1.519 7.643 1.994 1.484 H31 H4M 74
H4M H32 H32 H 0 1 N N N 8.652 -29.386 0.934 8.867 2.500 0.295 H32 H4M 75
H4M H33 H33 H 0 1 N N N 7.229 -27.588 2.138 7.007 2.950 -1.346 H33 H4M 76
H4M H34 H34 H 0 1 N N N 9.015 -28.035 4.312 7.404 4.407 1.259 H34 H4M 77
H4M H35 H35 H 0 1 N N N 7.404 -26.657 5.320 7.743 6.149 -0.339 H35 H4M 78
H4M H36 H36 H 0 1 N N N 7.992 -29.996 5.062 5.293 5.565 1.139 H36 H4M 79
H4M H37 H37 H 0 1 N N N 7.460 -28.432 6.710 4.046 5.569 -0.897 H37 H4M 80
H4M H38 H38 H 0 1 N N N 5.974 -30.744 4.130 4.851 3.299 1.809 H38 H4M 81
H4M H40 H40 H 0 1 N N N 11.608 -31.963 3.200 7.541 -1.137 1.959 H40 H4M 82
H4M CP1 CP1 C 0 1 N N N ? ? ? 9.393 -2.900 -0.531 CP1 H4M 83
H4M CP3 CP3 C 0 1 N N N ? ? ? 8.482 -4.091 -0.228 CP3 H4M 84
H4M CP2 CP2 C 0 1 N N N ? ? ? 10.117 -3.139 -1.831 CP2 H4M 85
H4M H4 H4 H 0 1 N N N -1.794 -28.264 16.719 -11.642 -2.009 -2.420 H4 H4M 86
H4M H5 H5 H 0 1 N N N ? ? ? 10.120 -2.784 0.273 H5 H4M 87
H4M H39 H39 H 0 1 N N N ? ? ? 7.701 -4.153 -0.985 H39 H4M 88
H4M H41 H41 H 0 1 N N N ? ? ? 9.069 -5.009 -0.235 H41 H4M 89
H4M OP1 OP1 O 0 1 N N N ? ? ? 9.973 -2.371 -2.753 OP1 H4M 90
H4M OP2 OP2 O 0 1 N N N ? ? ? 10.921 -4.205 -1.965 OP2 H4M 91
H4M CP4 CP4 C 0 1 N N N ? ? ? 7.842 -3.906 1.150 CP4 H4M 92
H4M CP5 CP5 C 0 1 N N N ? ? ? 6.945 -5.079 1.449 CP5 H4M 93
H4M OP5 OP5 O 0 1 N N N ? ? ? 6.828 -5.971 0.642 OP5 H4M 94
H4M OPX OPX O 0 1 N N N ? ? ? 6.274 -5.133 2.610 OPX H4M 95
H4M H42 H42 H 0 1 N N N ? ? ? 11.364 -4.317 -2.817 H42 H4M 96
H4M H43 H43 H 0 1 N N N ? ? ? 8.623 -3.844 1.908 H43 H4M 97
H4M H44 H44 H 0 1 N N N ? ? ? 7.255 -2.988 1.158 H44 H4M 98
H4M H45 H45 H 0 1 N N N ? ? ? 5.711 -5.905 2.757 H45 H4M 99
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H4M O3A PA SING N N 1
H4M C5J O5J SING N N 2
H4M C5J C4J SING N N 3
H4M PA O1A DOUB N N 4
H4M PA O5J SING N N 5
H4M PA O2A SING N N 6
H4M C4J O4J SING N N 7
H4M C4J C3J SING N N 8
H4M O4J C1J SING N N 9
H4M CX5 OX5 SING N N 10
H4M CX5 CX4 SING N N 11
H4M OX5 C1J SING N N 12
H4M C1J C2J SING N N 13
H4M CX4 OX4 SING N N 14
H4M CX4 CX3 SING N N 15
H4M C3J O3J SING N N 16
H4M C3J C2J SING N N 17
H4M CX3 OX3 SING N N 18
H4M CX3 CX2 SING N N 19
H4M C2J O2J SING N N 20
H4M OX2 CX2 SING N N 21
H4M CX2 CX1 SING N N 22
H4M CX1 C11 SING N N 23
H4M C11 C16 DOUB Y N 24
H4M C11 C12 SING Y N 25
H4M C16 C15 SING Y N 26
H4M C12 C13 DOUB Y N 27
H4M C15 C14 DOUB Y N 28
H4M C13 C14 SING Y N 29
H4M C14 N10 SING N N 30
H4M N10 C10 SING N N 31
H4M N10 C9 SING N N 32
H4M C10 N5 SING N N 33
H4M OH4 C4 DOUB N N 34
H4M C9 C9M SING N N 35
H4M C9 C6 SING N N 36
H4M N5 C6 SING N N 37
H4M N5 C4A SING N N 38
H4M C4 C4A SING N N 39
H4M C4 N3 SING N N 40
H4M C6 C7 SING N N 41
H4M C4A C8A DOUB N N 42
H4M N3 C2 SING N N 43
H4M C7 C7M SING N N 44
H4M C7 N8 SING N N 45
H4M C8A N8 SING N N 46
H4M C8A N1 SING N N 47
H4M C2 N1 DOUB N N 48
H4M C2 NA2 SING N N 49
H4M NA2 H1 SING N N 50
H4M NA2 H2 SING N N 51
H4M N3 H3 SING N N 52
H4M C6 H6 SING N N 53
H4M C7 H7 SING N N 54
H4M C7M H8 SING N N 55
H4M C7M H9 SING N N 56
H4M C7M H10 SING N N 57
H4M C9 H11 SING N N 58
H4M C9M H12 SING N N 59
H4M C9M H13 SING N N 60
H4M C9M H14 SING N N 61
H4M C10 H15 SING N N 62
H4M C10 H16 SING N N 63
H4M C12 H17 SING N N 64
H4M C13 H18 SING N N 65
H4M C15 H19 SING N N 66
H4M C16 H20 SING N N 67
H4M CX1 H21 SING N N 68
H4M CX1 H22 SING N N 69
H4M CX2 H23 SING N N 70
H4M CX3 H24 SING N N 71
H4M CX4 H25 SING N N 72
H4M CX5 H26 SING N N 73
H4M CX5 H27 SING N N 74
H4M OX2 H28 SING N N 75
H4M OX3 H29 SING N N 76
H4M OX4 H30 SING N N 77
H4M C5J H31 SING N N 78
H4M C5J H32 SING N N 79
H4M C4J H33 SING N N 80
H4M C3J H34 SING N N 81
H4M O3J H35 SING N N 82
H4M C2J H36 SING N N 83
H4M O2J H37 SING N N 84
H4M C1J H38 SING N N 85
H4M O2A H40 SING N N 86
H4M O3A CP1 SING N N 87
H4M CP1 CP3 SING N N 88
H4M CP1 CP2 SING N N 89
H4M N8 H4 SING N N 90
H4M CP1 H5 SING N N 91
H4M CP3 H39 SING N N 92
H4M CP3 H41 SING N N 93
H4M CP2 OP1 DOUB N N 94
H4M CP2 OP2 SING N N 95
H4M CP3 CP4 SING N N 96
H4M CP4 CP5 SING N N 97
H4M CP5 OP5 DOUB N N 98
H4M CP5 OPX SING N N 99
H4M OP2 H42 SING N N 100
H4M CP4 H43 SING N N 101
H4M CP4 H44 SING N N 102
H4M OPX H45 SING N N 103
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H4M SMILES ACDLabs 12.01 "N1=C(N)NC(C2=C1NC(C3N2CN(C3C)c4ccc(cc4)CC(C(O)C(O)COC5OC(COP(=O)(O)OC(CCC(=O)O)C(=O)O)C(O)C5O)O)C)=O"
H4M InChI InChI 1.03
;InChI=1S/C31H45N6O16P/c1-13-22-14(2)36(12-37(22)23-27(33-13)34-31(32)35-28(23)45)16-5-3-15(4-6-16)9-17(38)24(42)18(39)10-50-30-26(44)25(43)20(52-30)11-51-54(48,49)53-19(29(46)47)7-8-21(40)41/h3-6,13-14,17-20,22,24-26,30,38-39,42-44H,7-12H2,1-2H3,(H,40,41)(H,46,47)(H,48,49)(H4,32,33,34,35,45)/t13-,14+,17-,18+,19?,20+,22+,24-,25+,26+,30-/m0/s1
;
H4M InChIKey InChI 1.03 GBMIGEWJAPFSQI-UQXKJNEMSA-N
H4M SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1NC2=C(N3CN([C@H](C)[C@@H]13)c4ccc(C[C@H](O)[C@H](O)[C@H](O)CO[C@H]5O[C@H](CO[P](O)(=O)OC(CCC(O)=O)C(O)=O)[C@@H](O)[C@H]5O)cc4)C(=O)NC(=N2)N"
H4M SMILES CACTVS 3.385 "C[CH]1NC2=C(N3CN([CH](C)[CH]13)c4ccc(C[CH](O)[CH](O)[CH](O)CO[CH]5O[CH](CO[P](O)(=O)OC(CCC(O)=O)C(O)=O)[CH](O)[CH]5O)cc4)C(=O)NC(=N2)N"
H4M SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H]1[C@@H]2[C@H](N(CN2C3=C(N1)N=C(NC3=O)N)c4ccc(cc4)C[C@@H]([C@@H](C(CO[C@@H]5[C@@H]([C@@H]([C@H](O5)COP(=O)(O)OC(CCC(=O)O)C(=O)O)O)O)O)O)O)C"
H4M SMILES "OpenEye OEToolkits" 1.7.6 "CC1C2C(N(CN2C3=C(N1)N=C(NC3=O)N)c4ccc(cc4)CC(C(C(COC5C(C(C(O5)COP(=O)(O)OC(CCC(=O)O)C(=O)O)O)O)O)O)O)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
H4M "SYSTEMATIC NAME" ACDLabs 12.01
"1-{4-[(6S,6aR,7R)-3-amino-6,7-dimethyl-1-oxo-1,2,5,6,6a,7-hexahydroimidazo[1,5-f]pteridin-8(9H)-yl]phenyl}-1-deoxy-5-O-{5-O-[(R)-(1,3-dicarboxypropoxy)(hydroxy)phosphoryl]-alpha-D-ribofuranosyl}-D-ribitol"
H4M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6
"2-[[(2R,3S,4R,5S)-5-[(3S,4S)-5-[4-[(6S,6aR,7R)-3-azanyl-6,7-dimethyl-1-oxidanylidene-2,5,6,6a,7,9-hexahydroimidazo[1,5-f]pteridin-8-yl]phenyl]-2,3,4-tris(oxidanyl)pentoxy]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxypentanedioic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H4M "Create component" 2004-12-16 RCSB
H4M "Modify descriptor" 2011-06-04 RCSB
H4M "Other modification" 2015-04-08 RCSB
#