data_H5C # _chem_comp.id H5C _chem_comp.name "9-[(2R,3R,4R)-5-(hydroxymethyl)-3-methoxy-4-oxidanyl-oxolan-2-yl]-3H-purine-2,6-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H14 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-12 _chem_comp.pdbx_modified_date 2022-01-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 298.252 _chem_comp.one_letter_code ? _chem_comp.three_letter_code H5C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 7DGC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal H5C C02 C1 C 0 1 N N N -11.381 -51.936 -2.551 ? ? ? C02 H5C 1 H5C C03 C2 C 0 1 Y N N -10.547 -51.419 -3.728 ? ? ? C03 H5C 2 H5C C05 C3 C 0 1 Y N N -9.560 -50.977 -5.632 ? ? ? C05 H5C 3 H5C C07 C4 C 0 1 N N R -8.045 -49.088 -4.879 ? ? ? C07 H5C 4 H5C C08 C5 C 0 1 N N R -6.840 -49.531 -5.775 ? ? ? C08 H5C 5 H5C C10 C6 C 0 1 N N N -5.679 -50.778 -4.253 ? ? ? C10 H5C 6 H5C C11 C7 C 0 1 N N R -6.668 -48.332 -6.777 ? ? ? C11 H5C 7 H5C C13 C8 C 0 1 N N R -7.868 -47.927 -6.976 ? ? ? C13 H5C 8 H5C C14 C9 C 0 1 N N N -8.552 -48.797 -7.985 ? ? ? C14 H5C 9 H5C C17 C10 C 0 1 Y N N -9.655 -50.403 -3.530 ? ? ? C17 H5C 10 H5C C19 C11 C 0 1 N N N -10.293 -50.275 -1.058 ? ? ? C19 H5C 11 H5C N04 N1 N 0 1 Y N N -10.485 -51.769 -5.027 ? ? ? N04 H5C 12 H5C N06 N2 N 0 1 Y N N -9.056 -50.141 -4.694 ? ? ? N06 H5C 13 H5C N18 N3 N 0 1 N N N -9.497 -49.787 -2.180 ? ? ? N18 H5C 14 H5C N20 N4 N 0 1 N N N -11.228 -51.351 -1.258 ? ? ? N20 H5C 15 H5C O01 O1 O 0 1 N N N -12.157 -52.815 -2.715 ? ? ? O01 H5C 16 H5C O09 O2 O 0 1 N N N -5.745 -49.625 -5.040 ? ? ? O09 H5C 17 H5C O12 O3 O 0 1 N N N -5.896 -47.265 -6.089 ? ? ? O12 H5C 18 H5C O15 O4 O 0 1 N N N -9.275 -47.986 -8.868 ? ? ? O15 H5C 19 H5C O16 O5 O 0 1 N N N -8.602 -48.076 -5.479 ? ? ? O16 H5C 20 H5C O21 O6 O 0 1 N N N -10.162 -49.783 0.013 ? ? ? O21 H5C 21 H5C H1 H1 H 0 1 N N N -9.278 -51.009 -6.674 ? ? ? H1 H5C 22 H5C H2 H2 H 0 1 N N N -7.644 -48.802 -3.895 ? ? ? H2 H5C 23 H5C H3 H3 H 0 1 N N N -7.093 -50.450 -6.324 ? ? ? H3 H5C 24 H5C H4 H4 H 0 1 N N N -4.742 -50.776 -3.677 ? ? ? H4 H5C 25 H5C H5 H5 H 0 1 N N N -6.534 -50.799 -3.561 ? ? ? H5 H5C 26 H5C H6 H6 H 0 1 N N N -5.709 -51.666 -4.901 ? ? ? H6 H5C 27 H5C H7 H7 H 0 1 N N N -6.146 -48.675 -7.682 ? ? ? H7 H5C 28 H5C H8 H8 H 0 1 N N N -7.933 -46.872 -7.281 ? ? ? H8 H5C 29 H5C H10 H10 H 0 1 N N N -7.801 -49.374 -8.545 ? ? ? H10 H5C 30 H5C H11 H11 H 0 1 N N N -9.238 -49.488 -7.472 ? ? ? H11 H5C 31 H5C H12 H12 H 0 1 N N N -8.846 -49.040 -2.044 ? ? ? H12 H5C 32 H5C H13 H13 H 0 1 N N N -11.771 -51.689 -0.490 ? ? ? H13 H5C 33 H5C H14 H14 H 0 1 N N N -5.780 -46.528 -6.677 ? ? ? H14 H5C 34 H5C H15 H15 H 0 1 N N N -9.713 -48.530 -9.512 ? ? ? H15 H5C 35 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal H5C C02 C03 SING N N 1 H5C C02 N20 SING N N 2 H5C C02 O01 DOUB N N 3 H5C C03 C17 DOUB Y N 4 H5C C03 N04 SING Y N 5 H5C C05 N04 DOUB Y N 6 H5C C05 N06 SING Y N 7 H5C C07 C08 SING N N 8 H5C C07 N06 SING N N 9 H5C C07 O16 SING N N 10 H5C C08 C11 SING N N 11 H5C C08 O09 SING N N 12 H5C C10 O09 SING N N 13 H5C C11 C13 SING N N 14 H5C C11 O12 SING N N 15 H5C C13 C14 SING N N 16 H5C C14 O15 SING N N 17 H5C C17 N06 SING Y N 18 H5C C17 N18 SING N N 19 H5C C19 N18 SING N N 20 H5C C19 N20 SING N N 21 H5C C19 O21 DOUB N N 22 H5C C05 H1 SING N N 23 H5C C07 H2 SING N N 24 H5C C08 H3 SING N N 25 H5C C10 H4 SING N N 26 H5C C10 H5 SING N N 27 H5C C10 H6 SING N N 28 H5C C11 H7 SING N N 29 H5C C13 H8 SING N N 30 H5C C14 H10 SING N N 31 H5C C14 H11 SING N N 32 H5C N18 H12 SING N N 33 H5C N20 H13 SING N N 34 H5C O12 H14 SING N N 35 H5C O15 H15 SING N N 36 H5C O16 C13 SING N N 37 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor H5C InChI InChI 1.03 "InChI=1S/C11H14N4O6/c1-20-7-6(17)4(2-16)21-10(7)15-3-12-5-8(15)13-11(19)14-9(5)18/h3-4,6-7,10,16-17H,2H2,1H3,(H2,13,14,18,19)/t4-,6-,7-,10-/m1/s1" H5C InChIKey InChI 1.03 PASFATVSJBQETG-KQYNXXCUSA-N H5C SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1[C@H](O)[C@@H](CO)O[C@H]1n2cnc3C(=O)NC(=O)Nc23" H5C SMILES CACTVS 3.385 "CO[CH]1[CH](O)[CH](CO)O[CH]1n2cnc3C(=O)NC(=O)Nc23" H5C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@@H]1[C@@H](C(O[C@H]1n2cnc3c2NC(=O)NC3=O)CO)O" H5C SMILES "OpenEye OEToolkits" 2.0.7 "COC1C(C(OC1n2cnc3c2NC(=O)NC3=O)CO)O" # _pdbx_chem_comp_identifier.comp_id H5C _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "9-[(2~{R},3~{R},4~{R})-5-(hydroxymethyl)-3-methoxy-4-oxidanyl-oxolan-2-yl]-3~{H}-purine-2,6-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site H5C "Create component" 2020-11-12 PDBJ H5C "Initial release" 2022-02-02 RCSB ##