data_H5F # _chem_comp.id H5F _chem_comp.name "6-azanyl-9-[(2R,3R,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-1H-purin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H13 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-12 _chem_comp.pdbx_modified_date 2022-01-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 283.241 _chem_comp.one_letter_code ? _chem_comp.three_letter_code H5F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7DGA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal H5F C01 C1 C 0 1 N N N 21.943 34.003 6.221 0.308 1.593 0.885 C01 H5F 1 H5F C03 C2 C 0 1 N N N 21.726 34.224 4.020 2.326 0.960 0.403 C03 H5F 2 H5F C04 C3 C 0 1 N N N 21.874 34.441 2.525 3.700 0.784 0.220 C04 H5F 3 H5F C06 C4 C 0 1 N N N 19.468 33.979 2.208 3.245 -1.225 -0.914 C06 H5F 4 H5F C09 C5 C 0 1 N N N 20.490 33.898 4.537 1.447 -0.016 -0.108 C09 H5F 5 H5F C11 C6 C 0 1 N N R 19.556 33.425 6.822 -1.068 -0.278 -0.111 C11 H5F 6 H5F C12 C7 C 0 1 N N R 18.090 33.952 6.684 -1.810 -0.695 1.184 C12 H5F 7 H5F C13 C8 C 0 1 N N S 17.451 33.098 7.392 -3.278 -0.788 0.701 C13 H5F 8 H5F C14 C9 C 0 1 N N R 18.188 31.664 7.083 -3.309 0.069 -0.579 C14 H5F 9 H5F C16 C10 C 0 1 N N N 17.319 30.770 6.186 -4.335 1.194 -0.428 C16 H5F 10 H5F N02 N1 N 0 1 N N N 22.615 34.295 5.060 1.562 1.913 0.999 N02 H5F 11 H5F N05 N2 N 0 1 N N N 20.751 34.310 1.671 4.129 -0.326 -0.447 N05 H5F 12 H5F N08 N3 N 0 1 N N N 19.322 33.768 3.650 1.937 -1.073 -0.748 N08 H5F 13 H5F N10 N4 N 0 1 N N N 20.627 33.757 5.887 0.185 0.409 0.212 N10 H5F 14 H5F N20 N5 N 0 1 N N N 23.193 34.797 1.952 4.593 1.703 0.698 N20 H5F 15 H5F O07 O1 O 0 1 N N N 18.527 33.888 1.484 3.657 -2.209 -1.508 O07 H5F 16 H5F O15 O2 O 0 1 N N N 19.352 31.941 6.519 -1.994 0.623 -0.754 O15 H5F 17 H5F O17 O3 O 0 1 N N N 17.030 31.405 4.977 -4.441 1.911 -1.659 O17 H5F 18 H5F O18 O4 O 0 1 N N N 17.620 33.427 8.748 -3.622 -2.142 0.405 O18 H5F 19 H5F O19 O5 O 0 1 N N N 17.989 35.309 7.219 -1.346 -1.963 1.652 O19 H5F 20 H5F H1 H1 H 0 1 N N N 22.367 33.972 7.214 -0.517 2.174 1.269 H1 H5F 21 H5F H2 H2 H 0 1 N N N 19.892 33.551 7.862 -0.877 -1.146 -0.741 H2 H5F 22 H5F H3 H3 H 0 1 N N N 17.804 33.938 5.622 -1.702 0.066 1.957 H3 H5F 23 H5F H4 H4 H 0 1 N N N 16.387 33.006 7.126 -3.953 -0.379 1.453 H4 H5F 24 H5F H5 H5 H 0 1 N N N 18.322 31.156 8.049 -3.566 -0.554 -1.436 H5 H5F 25 H5F H6 H6 H 0 1 N N N 16.377 30.544 6.708 -5.305 0.768 -0.171 H6 H5F 26 H5F H7 H7 H 0 1 N N N 17.858 29.834 5.981 -4.015 1.873 0.362 H7 H5F 27 H5F H9 H9 H 0 1 N N N 23.872 34.849 2.684 4.275 2.488 1.170 H9 H5F 28 H5F H10 H10 H 0 1 N N N 23.468 34.099 1.291 5.544 1.570 0.564 H10 H5F 29 H5F H11 H11 H 0 1 N N N 16.493 30.835 4.440 -5.075 2.640 -1.637 H11 H5F 30 H5F H12 H12 H 0 1 N N N 17.151 32.801 9.287 -4.532 -2.259 0.098 H12 H5F 31 H5F H13 H13 H 0 1 N N N 17.095 35.619 7.130 -1.781 -2.268 2.460 H13 H5F 32 H5F H14 H14 H 0 1 N N N 20.856 34.450 0.686 5.079 -0.468 -0.586 H14 H5F 33 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal H5F O07 C06 DOUB N N 1 H5F N05 C06 SING N N 2 H5F N05 C04 SING N N 3 H5F N20 C04 SING N N 4 H5F C06 N08 SING N N 5 H5F C04 C03 DOUB N N 6 H5F N08 C09 DOUB N N 7 H5F C03 C09 SING N N 8 H5F C03 N02 SING N N 9 H5F C09 N10 SING N N 10 H5F O17 C16 SING N N 11 H5F N02 C01 DOUB N N 12 H5F N10 C01 SING N N 13 H5F N10 C11 SING N N 14 H5F C16 C14 SING N N 15 H5F O15 C11 SING N N 16 H5F O15 C14 SING N N 17 H5F C12 C11 SING N N 18 H5F C12 O19 SING N N 19 H5F C12 C13 SING N N 20 H5F C14 C13 SING N N 21 H5F C13 O18 SING N N 22 H5F C01 H1 SING N N 23 H5F C11 H2 SING N N 24 H5F C12 H3 SING N N 25 H5F C13 H4 SING N N 26 H5F C14 H5 SING N N 27 H5F C16 H6 SING N N 28 H5F C16 H7 SING N N 29 H5F N20 H9 SING N N 30 H5F N20 H10 SING N N 31 H5F O17 H11 SING N N 32 H5F O18 H12 SING N N 33 H5F O19 H13 SING N N 34 H5F N05 H14 SING N N 35 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor H5F InChI InChI 1.03 "InChI=1S/C10H13N5O5/c11-7-4-8(14-10(19)13-7)15(2-12-4)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1" H5F InChIKey InChI 1.03 MIKUYHXYGGJMLM-UUOKFMHZSA-N H5F SMILES_CANONICAL CACTVS 3.385 "NC1=C2N=CN([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)C2=NC(=O)N1" H5F SMILES CACTVS 3.385 "NC1=C2N=CN([CH]3O[CH](CO)[CH](O)[CH]3O)C2=NC(=O)N1" H5F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=NC2=C(NC(=O)N=C2N1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N" H5F SMILES "OpenEye OEToolkits" 2.0.7 "C1=NC2=C(NC(=O)N=C2N1C3C(C(C(O3)CO)O)O)N" # _pdbx_chem_comp_identifier.comp_id H5F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-1~{H}-purin-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site H5F "Create component" 2020-11-12 PDBJ H5F "Initial release" 2022-02-02 RCSB ##