data_H5I
#
_chem_comp.id H5I
_chem_comp.name "(4~{S})-3-[6-[2-azanyl-4-(trifluoromethyl)pyrimidin-5-yl]-2-morpholin-4-yl-pyrimidin-4-yl]-4-methyl-1,3-oxazolidin-2-one"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H18 F3 N7 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-02-07
_chem_comp.pdbx_modified_date 2022-08-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 425.365
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code H5I
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7R2B
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H5I C1 C1 C 0 1 N N S 6.169 -34.335 -23.319 3.066 3.037 -0.307 C1 H5I 1
H5I C2 C2 C 0 1 N N N 5.793 -35.381 -22.284 4.553 3.338 -0.577 C2 H5I 2
H5I C3 C3 C 0 1 N N N 7.872 -34.617 -21.717 4.258 1.085 -0.347 C3 H5I 3
H5I O1 O1 O 0 1 N N N 8.886 -34.508 -21.075 4.516 -0.101 -0.294 O1 H5I 4
H5I O2 O2 O 0 1 N N N 5.612 -28.819 -27.463 0.383 -5.295 0.333 O2 H5I 5
H5I C11 C4 C 0 1 N N N 5.645 -30.361 -25.592 -0.186 -3.156 1.301 C11 H5I 6
H5I C12 C5 C 0 1 Y N N 11.134 -30.500 -23.051 -1.841 1.222 0.426 C12 H5I 7
H5I C13 C6 C 0 1 Y N N 11.873 -29.981 -24.092 -2.095 2.344 1.221 C13 H5I 8
H5I C14 C7 C 0 1 Y N N 13.705 -29.765 -22.781 -4.290 2.310 0.527 C14 H5I 9
H5I C15 C8 C 0 1 Y N N 11.790 -30.544 -21.807 -2.897 0.682 -0.315 C15 H5I 10
H5I C16 C9 C 0 1 N N N 11.094 -30.793 -20.481 -2.678 -0.526 -1.188 C16 H5I 11
H5I F2 F1 F 0 1 N N N 10.828 -32.073 -20.281 -1.567 -0.312 -2.011 F2 H5I 12
H5I F F2 F 0 1 N N N 9.923 -30.153 -20.383 -2.452 -1.648 -0.383 F H5I 13
H5I F1 F3 F 0 1 N N N 11.818 -30.403 -19.451 -3.811 -0.741 -1.980 F1 H5I 14
H5I N6 N1 N 0 1 Y N N 13.074 -30.211 -21.673 -4.088 1.247 -0.238 N6 H5I 15
H5I N5 N2 N 0 1 N N N 14.997 -29.460 -22.657 -5.552 2.871 0.580 N5 H5I 16
H5I N4 N3 N 0 1 Y N N 13.147 -29.609 -23.999 -3.314 2.851 1.245 N4 H5I 17
H5I C6 C10 C 0 1 Y N N 9.783 -31.039 -23.345 -0.486 0.625 0.365 C6 H5I 18
H5I C5 C11 C 0 1 Y N N 9.311 -32.227 -22.795 0.628 1.424 0.116 C5 H5I 19
H5I N1 N4 N 0 1 Y N N 9.052 -30.302 -24.204 -0.315 -0.684 0.554 N1 H5I 20
H5I C7 C12 C 0 1 Y N N 7.807 -30.758 -24.471 0.892 -1.224 0.501 C7 H5I 21
H5I N3 N5 N 0 1 N N N 7.070 -30.068 -25.386 1.029 -2.587 0.702 N3 H5I 22
H5I C10 C13 C 0 1 N N N 5.282 -30.146 -27.041 0.031 -4.650 1.560 C10 H5I 23
H5I C9 C14 C 0 1 N N N 7.016 -28.572 -27.313 1.563 -4.765 -0.277 C9 H5I 24
H5I C8 C15 C 0 1 N N N 7.460 -28.736 -25.879 1.362 -3.273 -0.555 C8 H5I 25
H5I N2 N6 N 0 1 Y N N 7.245 -31.861 -23.949 1.972 -0.495 0.262 N2 H5I 26
H5I C4 C16 C 0 1 Y N N 8.013 -32.597 -23.139 1.881 0.817 0.069 C4 H5I 27
H5I N N7 N 0 1 N N N 7.410 -33.803 -22.710 3.021 1.573 -0.181 N H5I 28
H5I C C17 C 0 1 N N N 6.400 -34.906 -24.705 2.611 3.703 0.994 C H5I 29
H5I O O3 O 0 1 N N N 6.970 -35.583 -21.466 5.183 2.024 -0.576 O H5I 30
H5I H1 H1 H 0 1 N N N 5.396 -33.554 -23.360 2.450 3.369 -1.143 H1 H5I 31
H5I H2 H2 H 0 1 N N N 4.957 -35.022 -21.666 4.675 3.819 -1.548 H2 H5I 32
H5I H3 H3 H 0 1 N N N 5.507 -36.321 -22.779 4.967 3.961 0.215 H3 H5I 33
H5I H4 H4 H 0 1 N N N 5.040 -29.693 -24.961 -0.399 -2.651 2.243 H4 H5I 34
H5I H5 H5 H 0 1 N N N 5.444 -31.407 -25.317 -1.026 -3.023 0.618 H5 H5I 35
H5I H6 H6 H 0 1 N N N 11.385 -29.869 -25.049 -1.305 2.789 1.808 H6 H5I 36
H5I H7 H7 H 0 1 N N N 15.353 -29.150 -23.539 -6.275 2.486 0.061 H7 H5I 37
H5I H8 H8 H 0 1 N N N 15.104 -28.732 -21.980 -5.714 3.649 1.136 H8 H5I 38
H5I H9 H9 H 0 1 N N N 9.919 -32.830 -22.137 0.523 2.488 -0.036 H9 H5I 39
H5I H10 H10 H 0 1 N N N 4.201 -30.305 -27.168 -0.887 -5.088 1.951 H10 H5I 40
H5I H11 H11 H 0 1 N N N 5.834 -30.868 -27.661 0.835 -4.780 2.284 H11 H5I 41
H5I H12 H12 H 0 1 N N N 7.572 -29.282 -27.942 2.412 -4.899 0.393 H12 H5I 42
H5I H13 H13 H 0 1 N N N 7.234 -27.544 -27.639 1.753 -5.287 -1.215 H13 H5I 43
H5I H14 H14 H 0 1 N N N 8.553 -28.631 -25.821 0.547 -3.142 -1.268 H14 H5I 44
H5I H15 H15 H 0 1 N N N 6.984 -27.963 -25.258 2.279 -2.853 -0.968 H15 H5I 45
H5I H16 H16 H 0 1 N N N 5.450 -35.285 -25.109 3.270 3.398 1.807 H16 H5I 46
H5I H17 H17 H 0 1 N N N 6.790 -34.118 -25.366 2.651 4.786 0.881 H17 H5I 47
H5I H18 H18 H 0 1 N N N 7.128 -35.729 -24.646 1.589 3.398 1.220 H18 H5I 48
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H5I O2 C9 SING N N 1
H5I O2 C10 SING N N 2
H5I C9 C8 SING N N 3
H5I C10 C11 SING N N 4
H5I C8 N3 SING N N 5
H5I C11 N3 SING N N 6
H5I N3 C7 SING N N 7
H5I C C1 SING N N 8
H5I C7 N1 DOUB Y N 9
H5I C7 N2 SING Y N 10
H5I N1 C6 SING Y N 11
H5I C13 N4 DOUB Y N 12
H5I C13 C12 SING Y N 13
H5I N4 C14 SING Y N 14
H5I N2 C4 DOUB Y N 15
H5I C6 C12 SING N N 16
H5I C6 C5 DOUB Y N 17
H5I C1 N SING N N 18
H5I C1 C2 SING N N 19
H5I C4 C5 SING Y N 20
H5I C4 N SING N N 21
H5I C12 C15 DOUB Y N 22
H5I C14 N5 SING N N 23
H5I C14 N6 DOUB Y N 24
H5I N C3 SING N N 25
H5I C2 O SING N N 26
H5I C15 N6 SING Y N 27
H5I C15 C16 SING N N 28
H5I C3 O SING N N 29
H5I C3 O1 DOUB N N 30
H5I C16 F SING N N 31
H5I C16 F2 SING N N 32
H5I C16 F1 SING N N 33
H5I C1 H1 SING N N 34
H5I C2 H2 SING N N 35
H5I C2 H3 SING N N 36
H5I C11 H4 SING N N 37
H5I C11 H5 SING N N 38
H5I C13 H6 SING N N 39
H5I N5 H7 SING N N 40
H5I N5 H8 SING N N 41
H5I C5 H9 SING N N 42
H5I C10 H10 SING N N 43
H5I C10 H11 SING N N 44
H5I C9 H12 SING N N 45
H5I C9 H13 SING N N 46
H5I C8 H14 SING N N 47
H5I C8 H15 SING N N 48
H5I C H16 SING N N 49
H5I C H17 SING N N 50
H5I C H18 SING N N 51
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H5I InChI InChI 1.06 "InChI=1S/C17H18F3N7O3/c1-9-8-30-16(28)27(9)12-6-11(23-15(24-12)26-2-4-29-5-3-26)10-7-22-14(21)25-13(10)17(18,19)20/h6-7,9H,2-5,8H2,1H3,(H2,21,22,25)/t9-/m0/s1"
H5I InChIKey InChI 1.06 FBOZVYXXWXOUOV-VIFPVBQESA-N
H5I SMILES_CANONICAL CACTVS 3.385 "C[C@H]1COC(=O)N1c2cc(nc(n2)N3CCOCC3)c4cnc(N)nc4C(F)(F)F"
H5I SMILES CACTVS 3.385 "C[CH]1COC(=O)N1c2cc(nc(n2)N3CCOCC3)c4cnc(N)nc4C(F)(F)F"
H5I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1COC(=O)N1c2cc(nc(n2)N3CCOCC3)c4cnc(nc4C(F)(F)F)N"
H5I SMILES "OpenEye OEToolkits" 2.0.7 "CC1COC(=O)N1c2cc(nc(n2)N3CCOCC3)c4cnc(nc4C(F)(F)F)N"
#
_pdbx_chem_comp_identifier.comp_id H5I
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(4~{S})-3-[6-[2-azanyl-4-(trifluoromethyl)pyrimidin-5-yl]-2-morpholin-4-yl-pyrimidin-4-yl]-4-methyl-1,3-oxazolidin-2-one"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H5I "Create component" 2022-02-07 PDBE
H5I "Initial release" 2022-05-18 RCSB
H5I "Modify descriptor" 2022-08-22 RCSB
#