data_H5M # _chem_comp.id H5M _chem_comp.name TRANS-3-HYDROXY-5-METHYLPROLINE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H11 N O3" _chem_comp.mon_nstd_parent_comp_id PRO _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 145.156 _chem_comp.one_letter_code P _chem_comp.three_letter_code H5M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1A7Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal H5M N N N 0 1 N N N Y Y N 0.995 20.053 19.459 1.074 -0.489 0.678 N H5M 1 H5M CA CA C 0 1 N N S Y N N 1.692 19.530 20.659 0.035 -0.519 -0.386 CA H5M 2 H5M C C C 0 1 N N N Y N Y 1.738 20.534 21.811 0.583 0.011 -1.685 C H5M 3 H5M O O O 0 1 N N N Y N Y 1.781 21.742 21.567 1.526 0.767 -1.679 O H5M 4 H5M OXT OXT O 0 1 N Y N Y N Y 1.847 20.053 23.066 0.023 -0.354 -2.849 OXT H5M 5 H5M CB CB C 0 1 N N S N N N 3.135 19.271 20.160 -1.068 0.416 0.165 CB H5M 6 H5M CG CG C 0 1 N N N N N N 3.309 20.326 19.071 -1.056 0.110 1.680 CG H5M 7 H5M CD CD C 0 1 N N S N N N 1.931 20.488 18.413 0.335 -0.486 1.959 CD H5M 8 H5M OB OB O 0 1 N N N N N N 3.300 17.946 19.713 -2.339 0.097 -0.404 OB H5M 9 H5M CD1 CD1 C 0 1 N N N N N N 1.651 21.908 17.955 1.075 0.372 2.986 CD1 H5M 10 H5M H HN H 0 1 N Y N Y Y N 0.347 20.800 19.706 1.569 -1.367 0.625 H H5M 11 H5M HA HA H 0 1 N N N Y N N 1.167 18.632 21.061 -0.348 -1.531 -0.517 HA H5M 12 H5M HXT HXT H 0 1 N Y N Y N Y 1.875 20.676 23.781 0.375 -0.013 -3.683 HXT H5M 13 H5M HB HB H 0 1 N N N N N N 3.916 19.363 20.950 -0.816 1.461 -0.018 HB H5M 14 H5M HG2 1HG H 0 1 N N N N N N 3.738 21.284 19.445 -1.834 -0.612 1.927 HG2 H5M 15 H5M HG3 2HG H 0 1 N N N N N N 4.122 20.087 18.346 -1.195 1.027 2.253 HG3 H5M 16 H5M HD HD H 0 1 N N N N N N 1.846 19.890 17.475 0.234 -1.506 2.331 HD H5M 17 H5M HOB HOB H 0 1 N N N N N N 4.185 17.787 19.406 -2.992 0.658 0.035 HOB H5M 18 H5M HD11 1HD1 H 0 0 N N N N N N 2.361 22.238 17.161 2.061 -0.052 3.172 HD11 H5M 19 H5M HD12 2HD1 H 0 0 N N N N N N 0.592 22.025 17.625 1.183 1.386 2.601 HD12 H5M 20 H5M HD13 3HD1 H 0 0 N N N N N N 1.647 22.617 18.815 0.508 0.395 3.916 HD13 H5M 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal H5M N CA SING N N 1 H5M N CD SING N N 2 H5M N H SING N N 3 H5M CA C SING N N 4 H5M CA CB SING N N 5 H5M CA HA SING N N 6 H5M C O DOUB N N 7 H5M C OXT SING N N 8 H5M OXT HXT SING N N 9 H5M CB CG SING N N 10 H5M CB OB SING N N 11 H5M CB HB SING N N 12 H5M CG CD SING N N 13 H5M CG HG2 SING N N 14 H5M CG HG3 SING N N 15 H5M CD CD1 SING N N 16 H5M CD HD SING N N 17 H5M OB HOB SING N N 18 H5M CD1 HD11 SING N N 19 H5M CD1 HD12 SING N N 20 H5M CD1 HD13 SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor H5M SMILES ACDLabs 10.04 "O=C(O)C1NC(C)CC1O" H5M SMILES_CANONICAL CACTVS 3.341 "C[C@H]1C[C@H](O)[C@H](N1)C(O)=O" H5M SMILES CACTVS 3.341 "C[CH]1C[CH](O)[CH](N1)C(O)=O" H5M SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]1C[C@@H]([C@H](N1)C(=O)O)O" H5M SMILES "OpenEye OEToolkits" 1.5.0 "CC1CC(C(N1)C(=O)O)O" H5M InChI InChI 1.03 "InChI=1S/C6H11NO3/c1-3-2-4(8)5(7-3)6(9)10/h3-5,7-8H,2H2,1H3,(H,9,10)/t3-,4-,5-/m0/s1" H5M InChIKey InChI 1.03 RVIGBNHLNBRMFX-YUPRTTJUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier H5M "SYSTEMATIC NAME" ACDLabs 10.04 "(3S,5S)-3-hydroxy-5-methyl-L-proline" H5M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3S,5S)-3-hydroxy-5-methyl-pyrrolidine-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site H5M "Create component" 1999-07-08 RCSB H5M "Modify descriptor" 2011-06-04 RCSB H5M "Modify backbone" 2023-11-03 PDBE H5M "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 H5M PRO Methylation "Named protein modification" "Amino-acid side chain" "Any position" ? ? ? ? 2 H5M PRO Hydroxylation "Named protein modification" "Amino-acid side chain" "Any position" ? ? ? ? #